BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16410.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893553 jgi|Araly1|893553|Al_scaffold_0006_1549 791 0.0
Ahg473473 jgi|Araly1|473473|fgenesh2_kg.1__3427__AT1G32910.1 368 6e-101
> Ahg893553 jgi|Araly1|893553|Al_scaffold_0006_1549
Length=990
Score = 791 bits (428), Expect = 0.0
Identities = 506/543 (93%), Gaps = 7/543 (1%)
Strand=Plus/Plus
Query 657 CCACGACGACC--CTTGATCATCGACTCTTCAATAGACAAACTGTACATGCCTATAACGT 714
||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 410 CCACGACGACCTTTTTGATCATCGACTCATCAATAGACCAATTGTACATGCCTATAACGT 469
Query 715 CCTTGACCGTTCCACAAGAAATCACTAATCAAGATAATATCCTAACAAGCCGTATCTATT 774
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 470 CCTTGACCGTTCCACAAGAAATCACTAATCCAGATAATATCCTCACAAGCCGTATCTATT 529
Query 775 ACATCAAAGCAGATGTCTTAGAAAAGTTTCAAACTCTGGCTA-CTAATGGTAAGAGGACC 833
|||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||
Sbjct 530 ACATCAAAGCAGATGTCTTAGAAAAGCTTCAAACTCTGGCTAGC-AATGGTAAGAGAACG 588
Query 834 AAACTCGAGTCTTTCAGTGCGTTTCTATGGAAACTCTTGGCTAAACACGCTGCAACAGAG 893
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 589 AAACTGGAGTCTTTCAGCGCGTTTCTATGGAAACTCTTAGCTAAACACGCTGCAACAGAT 648
Query 894 TCGGTACTCCCGACTAAAACCTCGAAACTTGGCATCGTTGTTGATGGAAGGAAGAAACTT 953
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 649 TCGGTACTCCTGACTAAAAACTCGAAACTTGGCATCGTTGTTGACGGAAGGAAGAAACTT 708
Query 954 ATGGAGCAAGA-GAA--CTGCAATTACTTTGGGAACGTCCTCTCAGTTCCATTTGGAGAG 1010
||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 709 ATGGAGCAAGAAGAAAACTGCAATTACTTTGGGAATATCCTCTCGGTTCCATTTGGAGAG 768
Query 1011 CGGAGAATCGATGACTTGATCCACAAGCCATTGTCTTGGGTGACAGACGAGGTTCACAAG 1070
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 769 CAGAGAATCGATGACTTGATCCACAAGCCATTGTCTTGGGTGACTGACGAGGTTCACAAG 828
Query 1071 TTACTGGAGAGTACAATGACCAAAGACCATTTCTTGAACTTGATCGATTGGGTTGAGACT 1130
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 829 TTACTGGAGAGTACAATGACCAAAGATCATTTCTTGAACTTGATCGATTGGATTGAGACT 888
Query 1131 AGCCGTCCGATACCAGTTATATCAAGGATCTACAGTACAGGATCCAACGATGGACCCGCT 1190
|||||||||||||||||||||||||||| ||| |||| |||| ||||||||| || |||
Sbjct 889 CGCCGTCCGATACCAGTTATATCAAGGATATACGGTACTGGATTCAACGATGGGCCTGCT 948
Query 1191 TTC 1193
|||
Sbjct 949 TTC 951
Score = 172 bits (93), Expect = 5e-42
Identities = 99/102 (97%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 446 TATTGCCAAGTTTGTTCCCATGAAAAAGCATGGAGTCTTTGCTATTCAGGTAACTGAACT 505
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 306 TATTGCCAAGTTTGTTCCCATGAAAAAGCATGGAGTCTTTACTATTCAGGTAACTGAACT 365
Query 506 GAAATGTGGGAGCGTAGTAGTGGGATGCACATTTGATCACCG 547
||||||||||||| |||| |||||||||||||||||||||||
Sbjct 366 GAAATGTGGGAGCTTAGTTGTGGGATGCACATTTGATCACCG 407
> Ahg473473 jgi|Araly1|473473|fgenesh2_kg.1__3427__AT1G32910.1
Length=1299
Score = 368 bits (199), Expect = 6e-101
Identities = 430/538 (80%), Gaps = 29/538 (5%)
Strand=Plus/Plus
Query 915 TCGAAACTTGGCATCGTTGTTGATGGAAGGAAGAA-ACTTATGGAGCAAGAGAACTGCAA 973
|||||| | || ||||| |||||||||||| |||| |||||||||| |||| ||| |||
Sbjct 766 TCGAAAATGGGTATCGTCGTTGATGGAAGG-AGAAGACTTATGGAGAAAGAAAACAGCAC 824
Query 974 TTACTTTGGGAACGTCCTCT-CAGTTCCATTTGGAGAGCGGAGAATCGATGACTTGATCC 1032
||||||||| ||||| || | || | |||||||| | || || ||| ||||||||||
Sbjct 825 TTACTTTGGAAACGTTCTTTCCA-TCCCATTTGGTGGGCACAGTATCAATGACTTGATTG 883
Query 1033 ACAAGCCATTGTCTTGGGTGA-CAGACGAGGTTCACAAGTTAC-TGGAGAGTA-CAATGA 1089
||||||||||||||||||||| || |||| |||||||| || | |||| || | || |||
Sbjct 884 ACAAGCCATTGTCTTGGGTGAGCA-ACGAAGTTCACAAATT-CTTGGA-AGAAGCAGTGA 940
Query 1090 CCAAAGACCATTTCTTGAACTTGATCGATTGGGTTGAGACT-AGCCGTCCGATACCAGTT 1148
| ||||| |||||||| |||||||||||||||||||||| | | ||| |||||||| |
Sbjct 941 CAAAAGATCATTTCTTAAACTTGATCGATTGGGTTGAGATTCA-CCGCCCGATACC-GGC 998
Query 1149 A-TATCAAGGATCTACAGTACAGGATCCAACGATGGACCCGCTTTCGTTGTTTCGTCTGG 1207
| | || |||||||| ||||| ||| ||||| ||||||||||||| || ||||| || |
Sbjct 999 ATTGTCGAGGATCTATAGTACCGGAGCCAACTATGGACCCGCTTTTGTGGTTTCCTC-CG 1057
Query 1208 AAAGAGTTTTCCAGTGGCC-CGGATTGATTTCGGGTGGGGCTCGCCTGTTTTTGGATCGT 1266
| | ||||| ||| || || | |||||||| ||||||| || ||| |||| || |
Sbjct 1058 ---G-G-TTTCCGGTGACCAAGG-TGGATTTCGGTTGGGGCTTACCGGTTATTGGGTCCT 1111
Query 1267 ACCATCTCCCACCCGGG-A-GCAGAGCTGGTTACGTAATGACAATGCCGAGTCCGGTGGA 1324
||||| ||||| ||| | |||| || || || || ||| ||||||||||||| |||||
Sbjct 1112 ACCATTTCCCA--TGGGAAGGCAGCGCCGGATATGTGATGCCAATGCCGAGTCCCGTGGA 1169
Query 1325 AAACGGTGGCTCCGGAGATTGGACGGTTTACTTGCATCTTACGAAAGGACAGTTGAGGTT 1384
|||| || |||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 1170 CGACGG-GG--ACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTT 1226
Query 1385 TATTGAACAAGAGGCTTCTCATGTGTTTAATCCTGTTGACAACGACTATCTCAAGATT 1442
|||||| | |||| ||| |||||| |||| || | ||||| |||||||||||||||
Sbjct 1227 CATTGAAGAGGAGGTTTCCCATGTGCTTAAACCCATAGACAATGACTATCTCAAGATT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5