BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16420.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488495 jgi|Araly1|488495|fgenesh2_kg.6__1629__AT5G16420.1 2499 0.0
> Ahg488495 jgi|Araly1|488495|fgenesh2_kg.6__1629__AT5G16420.1
Length=1602
Score = 2499 bits (1353), Expect = 0.0
Identities = 1526/1610 (95%), Gaps = 10/1610 (1%)
Strand=Plus/Plus
Query 1 ATGTTCCTTTCCCGCGTGAACCCCACGCGCTTCCCTCCATTCGTAGCTTCTCGTCGTCTC 60
||||||||| ||||||||||| ||||||||| | |||| || |||||||||||||||||
Sbjct 1 ATGTTCCTTCCCCGCGTGAACGGCACGCGCTTTCGTCCACTCATAGCTTCTCGTCGTCTC 60
Query 61 TTCTCCGCCTCCGCCTCCGCCGCTTCTCTTCAGCAATACTGCACGGAGAAG-CCACCGAT 119
| | ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 61 -T-T----CTCCGCCTCCGCCGCTTCTCTCCAGCAATACTGCACGGAGAAGCCCA-CGAT 113
Query 120 CAAACCGTGGCCGCAGAGGCTATTCCCGAAGCGATTAGTCTCCATGATCACCCAACAGCA 179
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 114 CAAACCGTGGCCGCAGAGGCTATTCCCGAAGCGATTGGTCTCAATGATCACCCAACAGCA 173
Query 180 GAACATCGATCTCGCTCTCCAAATATTTCTCTACGCCGGTAAATCTCATCCCGGTTTCAC 239
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 174 GAACATCGATCTCGCTCTCCAGATATTTCTCTACGCCGGTAAATCCCATCCCGGTTTCAC 233
Query 240 TCATAATTACGATACTTACCACTCAATTCTCTTCAAACTATCCCGTGCTCGTGCTTTCGA 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCACAATTACGATACTTACCACTCAATTCTCTTCAAACTATCCCGTGCTCGTGCTTTCGA 293
Query 300 TCCCGTGGAGTCTCTCATGGCGGATCTTCGGAACTCATACCCTCCGATCAAATGCGGCGA 359
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 294 TCCCGTGGAGTCTCTCATGGCGGATCTTCGGAATTCATACCCGCCGATTAAATGCGGCGA 353
Query 360 GAATCTCTTCATCGACTTGCTTCGAAACTACGGTCTCGCAGGTCGTTACGAATCTTCAAT 419
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 354 GAATCTTTTCATCGACTTGCTTCGAAACTACGGTCTCGCTGGTCGATACGAATCTTCAAT 413
Query 420 GAGGATCTTTCTTCGAATCCCTGATTTCGGTGTTAAACGCTCCGTTAGATCGTTAAACAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GAGGATCTTTCTTCGAATCCCTGATTTCGGTGTTAAACGCTCCGTTAGATCGTTAAACAC 473
Query 480 ACTCTTAAACGTTTTAATCCAGAATCAGAGATTTGATTTGGTTCATGCCATGTTTAAGAA 539
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACTGTTAAACGTTCTAATCCAGAATCAGAGATTTGATTTGGTTCATGCCATGTTTAAGAA 533
Query 540 CAGTAAGGAGTCTTTTGGAATTACGCCGAACATCTTCACTTGTAATCTACTAGTCAAAGC 599
|||||||||||| |||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 534 CAGTAAGGAGTCCTTTGGAATCACCCCCAACATCTTCACTTGTAATCTACTCGTCAAAGC 593
Query 600 TCTCTGCAAGAAAAATGATATTGAAAGTGCATATAAAGTGCTCGACGAAATTCCTTCGAT 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 594 TCTCTGCAAGAAAAATGATATAGAAAGTGCATATAAAGTGCTCGACGAAATTCCTGCAAT 653
Query 660 GGGATTAGTGCCAAATTTGGTGACTTACACTACGATTCTAGGTGGGTATGTTGCTAGAGG 719
||| || |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 654 GGGTTTGGTGCCAAATTTGGTGACTTACACTACGATTTTAGGTGGGTACGTTGCTAGAGG 713
Query 720 TGATATGGAATCGGCTAAGAGGGTTTTGGAAGAGATGTTGGATCGTGGGTGGTATCCGGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGATATGGAATCGGCTAAGAGGGTTTTGGAAGAGATGTTGGATCGTGGGTGGTATCCGGA 773
Query 780 TGCGACGACTTACACTGTTCTCATGGATGGTTACTGTAAGTTAGGGAGATTCTCTGAGGC 839
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 774 TGCGACCACTTACACGGTTCTCATGGATGGTTACTGTAAGTTAGGGAGATTCTCCGAGGC 833
Query 840 AGCTACGGTGATGGATGATATGGAAAAGAATGAGATTGAGCCTAATGAAGTAACTTATGG 899
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 834 AGCTACGGTGATGGATGATATGGAAAAGAACGAGATTGAGCCAAATGAAGTAACTTATGG 893
Query 900 TGTTATGATCAGAGCTTTATGTAAGGAGAAGAAATCTGGGGAAGCACGTAACATGTTCGA 959
|||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 894 AGTTATGATCAGAGCCTTATGCAGGGAGAAGAAATCCGGGGAAGCACGTAACATGTTCGA 953
Query 960 TGAAATGCTTGAGAGAAGTTTTATGCCAGATTCTTCTCTTTGTTGTAAAGTTATTGATGC 1019
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGAAATGCTTGACAGAAGTTTTATGCCAGATTCTTCTCTTTGTTGTAAAGTTATTGATGC 1013
Query 1020 GTTGTGTGAAGACCATAAGGTAGATGAAGCATGTGGTCTGTGGAGAAAAATGTTGAAGAA 1079
| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATGTGTGAAGACCACAAGGTGGATGAAGCATGTGGTCTGTGGAGAAAAATGTTGAAGAA 1073
Query 1080 CAATTGTATGCCTGATAATGCCCTTCTGAGCACTCTCATCCATTGGCTTTGTAAAGAAGG 1139
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1074 CAATTGTATGCCTGATAATGCTCTTCTGAGCACTCTTATCCATTGGCTTTGCAAAGAAGG 1133
Query 1140 GAGAGTTACTGAAGCGAGGAAATTGTTTGATGAGTTTGAGAAAGGCTCGATCCCTAGTCT 1199
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 GAGAGTTACAGAAGCGAGGAAATTGTTCGATGAGTTTGAGAAAGGCTCGATCCCTAGTCT 1193
Query 1200 CTTGACGTATAACACGTTGATTGCTGGAATGTGCGAGAAGGGAGAGTTGACAGAGGCGGG 1259
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 TTTGACGTACAACACGTTGATTGCTGGAATGTGCGAGAAGGGTGAGTTGACAGAGGCGGG 1253
Query 1260 TAGATTATGGGACGATATGTATGAGAGGAAATGTAAGCCGAATGCTTTCACGTATAACGT 1319
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TAGATTATGGGACGACATGTTTGAGAGGAAATGTAAGCCGAATGCTTTCACGTATAACGT 1313
Query 1320 TTTGATTGAAGGGTTGTCCAAGAATGGGAATGTTAAAGAAGGAGTCAGGGTACTTGAAGA 1379
|||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1314 TTTGATCGAAGGCTTGTCCAAGAACGGAAATGTTAAAGAAGGAGTCAGAGTACTTGAAGA 1373
Query 1380 GATGCTGGAGATTGGTTGCTTTCCTAACAAAACAACGTTCCTGATATTGTTTGAGGGGTT 1439
|||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct 1374 GATGCTGGAGATTGGTTGCTTTCCCAACAAAACAACGTTCTTGATATTGTTCGAGGGGTT 1433
Query 1440 GCAGAAGTTAGGGAAAGAAGAGGATGCGATGAAGATTGTTTCCATGGCTGTTATGAATGG 1499
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1434 GCAGAAGTTAGGAAAAGAAGAGGATGCGATTAAGATTGTTTCAATGGCTGTTATGAATGG 1493
Query 1500 GAAAGTTGATAAAGAGTCTTGGGAACTTTTCTTGAAGAAATTTGCTGGTGAACTAGATAA 1559
|||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1494 AAAAGTTGATAGAGAGTCTTGGGAACTTTTCTTGAAGAAGTTTGTTGGTGAACTAGATAA 1553
Query 1560 AGGGGTCTTGC-CTCTTAAAGAATTGTTGCATGAAATTTCTGTCTCTTGA 1608
|||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1554 AGGGGT-TTGGGCTCTTAAAGAGTTGTTGCATGAAATTTCTGTCTCTTGA 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5