BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16440.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488496 jgi|Araly1|488496|fgenesh2_kg.6__1630__AT5G16440.1 1546 0.0
Ahg477520 jgi|Araly1|477520|fgenesh2_kg.3__221__AT3G02780.1 869 0.0
> Ahg488496 jgi|Araly1|488496|fgenesh2_kg.6__1630__AT5G16440.1
Length=978
Score = 1546 bits (837), Expect = 0.0
Identities = 937/985 (95%), Gaps = 7/985 (1%)
Strand=Plus/Plus
Query 139 ATGTCTACTGCTTCACTATTTAGcttcccttcatttcatctcagatccctccttccttct 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGTCTACTGCTTCACTATTTAGCTTCCCTTCATTTCATCTCAGATCCCTCCTT-CTTC- 58
Query 199 ctctcttcttcttcttcttcttcctcttcCCGATTTGCCCCTCCCCGTCTTTCTCCGATC 258
||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 59 CTCTC-TCTTCTTCTTCTTCCTCCTCTTCCCGATTTGCCCCTCTCCGTCTTTCTGCGATC 117
Query 259 CGATCTCCGGCGCCGAGGACTCAGCTGTCTGTTCGCGCTTTCTCAGCCGTCACCATGACC 318
|||||||| | | ||||| |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 118 CGATCTCC-G-G-CGAGGTCTCACCTGTCTTTTCGCACTTTCTCAGCCGTCACCATGACC 174
Query 319 GATTCTAACGATGCTGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAAGACGAATGC 378
||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 175 GATGCTAACGATGCCGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAGGACGAATGC 234
Query 379 ATTCTCGTTGATGAAAATGATCGTGTGGTGGGACATGACACTAAGTATAACTGTCATCTG 438
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 235 ATTCTCGTTGATGAAAATGATCGTGTGGTTGGCCATGACACTAAATATAACTGTCATCTG 294
Query 439 ATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAAC 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAAC 354
Query 499 TCCAAGTATGAGTTGCTTCTCCAGCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTG 558
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 355 TCCAAGTATGAGTTGCTTCTCCAGCAACGTTCAAAAACAAAGGTTACTTTCCCACTTGTG 414
Query 559 TGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAAT 618
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 415 TGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCTGAGCTTATTGAAGAGAGT 474
Query 619 GTGCTTGGTGTAAGAAATGCCGCACAAAGGAAGCTTTTCGATGAGCTCGGTATTGTAGCA 678
|||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||
Sbjct 475 GTGCTTGGTGTAAGAAATGCTGCACAAAGGAAGCTTCTCGATGAGCTCGGGATAGTAGCT 534
Query 679 GAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTCT 738
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAAGATGTACCAGTCAATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTCT 594
Query 739 GATGGGAAATGGGGAGAGCACGAAGTTGACTATCTACTCTTCATCGTGCGGGATGTGAAG 798
||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 595 GATGGAAAATGGGGAGAGCACGAACTTGACTATCTACTTTTCATCGTGCGGGATGTGAAG 654
Query 799 CTTCAACCAAACCCAGATGAAGTGGCTGAGATCAAGTACGTGAGCAGGGAAGAGCTTAAG 858
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 CTTGAACCAAACCCGGATGAAGTGGCTGAGATCAAGTATGTGAGCAGGGAAGAGCTTAAG 714
Query 859 GAGCTGGTGAAGAAAGCAGATGCTGGCGATGAAGCTGTGAAACTATCTCCATGGTTCAGA 918
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 715 GAGCTGGTGAAGAAAGCAGATGCAGGCGATGAAGCTGTGAAACTATCTCCATGGTTTAGA 774
Query 919 TTGGTGGTGGATAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTATCACT 978
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 775 TTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTCTCATT 834
Query 979 GAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAACTTTCCATAAGTTTTGGATCTTC 1038
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 835 GAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAACTTACCAGAAGTTTTGGATCTTC 894
Query 1039 CCCTTCCCATAATAAAATTAAGAGATGAGACTTTTATTGATTACAGACAAAACTGGCAAC 1098
|||||| |||||||||||||| | |||||||||| ||||||| |||||||||||||||||
Sbjct 895 CCCTTCTCATAATAAAATTAAAAAATGAGACTTT-ATTGATTTCAGACAAAACTGGCAAC 953
Query 1099 AAAATCTATTCCTAGGAtttttttt 1123
|| |||| |||||||||||||||||
Sbjct 954 AACATCTCTTCCTAGGATTTTTTTT 978
> Ahg477520 jgi|Araly1|477520|fgenesh2_kg.3__221__AT3G02780.1
Length=901
Score = 869 bits (470), Expect = 0.0
Identities = 624/700 (89%), Gaps = 4/700 (1%)
Strand=Plus/Plus
Query 319 GATTCTAACGATGCTGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAAGACGAATGC 378
||| |||| |||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 193 GATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAGGATGAATGC 252
Query 379 ATTCTCGTTGATGAAAATGATCGTGTGGTGGGACATGACA-CTAAGTATAACTGTCATCT 437
||||| |||||||||| ||||||||| |||| ||||||| | || ||||| ||||||||
Sbjct 253 ATTCTTGTTGATGAAACTGATCGTGTCCTGGGGCATGACAGC-AAATATAATTGTCATCT 311
Query 438 GATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAA 497
||||||||| ||||||||| ||||||| |||||||| ||||| ||||| |||||||||||
Sbjct 312 GATGGAAAATATTGAAGCTAAGAATTTGCTTCACAGGGCTTTTAGTGTATTTTTATTCAA 371
Query 498 CTCCAAGTATGAGTTGCTTCTCCAGCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGT 557
||| ||||||||||| |||||||||||| ||||||| ||||||||||| ||||| || ||
Sbjct 372 CTCGAAGTATGAGTTACTTCTCCAGCAAAGGTCAAACACAAAGGTTACATTCCCTCTCGT 431
Query 558 GTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAA 617
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 432 GTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATCCAAGAAAA 491
Query 618 TGTGCTTGGTGTAAGAAATGCCGCACAAAGGAAGCTTTTCGATGAGCTCGGTATTGTAGC 677
|| || ||||| || ||||| |||||||| |||||| |||| ||||| |||||||||||
Sbjct 492 TGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGACGAGCTTGGTATTGTAGC 551
Query 678 AGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTC 737
||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||
Sbjct 552 TGAAGATGTACCAGTCGATGAGTTCACTGCCTTGGGACGTATGCTATACAAGGCTCCTTC 611
Query 738 TGATGGGAAATGGGGAGAGCACGAAGTTGACTATCTA-CTCTTCATCGTGCGGGATGTGA 796
||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||
Sbjct 612 TGATGGGAAATGGGGAGAGCACGAACTTGATTA-CTTGCTCTTCATCGTGCGGGATGTGA 670
Query 797 AGCTTCAACCAAACCCAGATGAAGTGGCTGAGATCAAGTACGTGAGCAGGGAAGAGCTTA 856
|| ||||||||||||| |||||||| ||||| |||||||| |||||| |||||||||| |
Sbjct 671 AGGTTCAACCAAACCCGGATGAAGTAGCTGATATCAAGTATGTGAGCCGGGAAGAGCTGA 730
Query 857 AGGAGCTGGTGAAGAAAGCAGATGCTGGCGATGAAGCTGTGAAACTATCTCCATGGTTCA 916
||||||||||||||||||||||||| || || |||| | ||||||| || ||||||||||
Sbjct 731 AGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTGTCACCATGGTTCA 790
Query 917 GATTGGTGGTGGATAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTATCA 976
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 791 GGTTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTTTGG 850
Query 977 CTGAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAAC 1016
||||||| ||||||||||||||| |||||||||| |||
Sbjct 851 GTGAAGCTATAGACATGAAAACCATCCACAAGCTCTAAAC 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5