BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16450.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488497 jgi|Araly1|488497|fgenesh2_kg.6__1631__AT5G16450.1 1083 0.0
Ahg477519 jgi|Araly1|477519|fgenesh2_kg.3__220__AT3G02770.1 582 1e-165
> Ahg488497 jgi|Araly1|488497|fgenesh2_kg.6__1631__AT5G16450.1
Length=801
Score = 1083 bits (586), Expect = 0.0
Identities = 693/741 (94%), Gaps = 22/741 (3%)
Strand=Plus/Plus
Query 105 TATTATGGAGAAGTGAGAGCAAGTGTTAG-CTTTTGA--T-C-TT----T--CTTATAT- 152
|||||||||||||||||||||||| || | | ||||| | | || | ||||| |
Sbjct 69 TATTATGGAGAAGTGAGAGCAAGTTTTGGAC-TTTGATCTCCTTTAGAATCACTTAT-TC 126
Query 153 TCTTCTCTGAAATAGTAACACACTGTGAAGAGTTTTTC-CTACATCTGAATTTTGTCTGA 211
|||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||
Sbjct 127 TCTTCTCTGAAATAGTAACAGACTGTGAAGAGAGTTTCTCTGCATCTGAATTTTGTCTGA 186
Query 212 TCCAGGAAAAAGAAGAAAATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATCAA 271
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCCAGGGAAACGAAGAAAATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATCAA 246
Query 272 GAGCTGATTCGGAGTGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCCGT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GAGCTGATTCGGAGTGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCCGT 306
Query 332 CGACAAATATTCTCAGGACCAGTTGTCACTGTCAAAGTTTTTGAAGACAATGGCTTAATC 391
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 307 CGACAAATATTCTCAGGACCAGTTGTTACTGTCAAAGTATTTGAAGACAATGGCTTAATC 366
Query 392 CGTCAATTCATCGAGGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGGAGT 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 CGTCAATTCATCGAGGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGAAGT 426
Query 452 CAACGATGTGCAATACTCGGAGGTAACCCCGTTGTTCAAGCTCAGAACAACGGATGGGCA 511
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 427 CAACGATGTGCAATACTCGGAGGTAACCCCGTGGTTCAAGCTCAGAACAACGGATGGGCG 486
Query 512 GGAATCGTTGTGAACGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATCGGA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GGAATCGTTGTGAACGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATCGGA 546
Query 572 GTGAGAGCTTTGGCCTCTCATCCGATAAAAGCGAGTAAGAAAGG-ACTTGGAGAACAACG 630
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 547 GTGAGAGCTTTGGCCTCTCATCCGATAAAGGCGAGTAA-AAAGGGACTTGGAGAACAACG 605
Query 631 AGTTCCGGTAAATATCGCAGGGACTCGGATTTGTGATGGTGAATGGCTTTATGCAGATAC 690
||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 606 AGTTCCGGTTAACATTGCAGGGACTCGGATTTGTGATGGAGAATGGCTTTATGCAGATAC 665
Query 691 TGATGGGATTCTTGTCTCCCAAATTGAGTTATCCGTTTAATAAAAAAGGCTTTGATCAGT 750
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 666 TGATGGGATTCTTGTCTCCCAGATTGAGTTATCCGTTTAAGAAAAAAGGCTTTGATCAGT 725
Query 751 TACCaaaaaaaaaaaaaCAGAACGTGGTTTGTGTTCATCTTCTTGTTACTTAAGAGATTG 810
||| ||||||||||| |||| |||||||||||| ||||||| |||||| ||||||||
Sbjct 726 TAC-AAAAAAAAAAA----GAACTTGGTTTGTGTTCTTCTTCTTTTTACTTCAGAGATTG 780
Query 811 TTGAATTATAATGGAAAATAA 831
| ||||||||||||||||||
Sbjct 781 ATAAATTATAATGGAAAATAA 801
Score = 89.8 bits (48), Expect = 3e-17
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 TCTCATGATTCCTTGCTCTAAGCTTCACCACTACCTCTGATCTGATTT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCATGATTCCTTGCTCTAAGCTTCACCACTACCTCTGATCTGATTT 48
> Ahg477519 jgi|Araly1|477519|fgenesh2_kg.3__220__AT3G02770.1
Length=733
Score = 582 bits (315), Expect = 1e-165
Identities = 442/505 (88%), Gaps = 1/505 (0%)
Strand=Plus/Plus
Query 227 AAA-ATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATCAAGAGCTGATTCGGAG 285
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 128 AAATATGGCGTTTGTGACCACTGCGGAAGTTTGTGACGCGAATCAAGAACTGATTCGTAG 187
Query 286 TGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCCGTCGACAAATATTCTC 345
||| ||||| |||||| ||||||||| |||||||||||| || ||||| |||||||| ||
Sbjct 188 TGGCCAGCTCCGAGCTCTGCAACCCAATTTCCAGATTTACGGTCGTCGTCAAATATTTTC 247
Query 346 AGGACCAGTTGTCACTGTCAAAGTTTTTGAAGACAATGGCTTAATCCGTCAATTCATCGA 405
||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 248 AGGTCCAGTAGTTACTGTCAAAGTATTTGAAGACAATGGCTTAATCCGTCACTTCCTCGA 307
Query 406 GGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGGAGTCAACGATGTGCAAT 465
|| ||||| || || |||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 308 AGAAAAAGGGAATGGAAGAGTTCTTGTGGTGGATGGTGGAGGGAGTTTACGCTGTGCGAT 367
Query 466 ACTCGGAGGTAACCCCGTTGTTCAAGCTCAGAACAACGGATGGGCAGGAATCGTTGTGAA 525
||| ||||| ||||| || || ||||| |||||||||||||||||||| ||| | |||||
Sbjct 368 ACTAGGAGGAAACCCGGTAGTACAAGCGCAGAACAACGGATGGGCAGGGATCATAGTGAA 427
Query 526 CGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATCGGAGTGAGAGCTTTGGC 585
||| |||||||||||||| ||||||||||| ||||| || || |||||||||||||||||
Sbjct 428 CGGTTGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATTGGAGTGAGAGCTTTGGC 487
Query 586 CTCTCATCCGATAAAAGCGAGTAAGAAAGGACTTGGAGAACAACGAGTTCCGGTAAATAT 645
|||||||| |||||||| ||||||||||||||||| |||||| |||| || | || ||
Sbjct 488 TTCTCATCCAATAAAAGCTAGTAAGAAAGGACTTGGTGAACAAAGAGTCCCTTTGAACAT 547
Query 646 CGCAGGGACTCGGATTTGTGATGGTGAATGGCTTTATGCAGATACTGATGGGATTCTTGT 705
||||| |||||||| || ||||| |||||||||||||||||||||||||| || |||||
Sbjct 548 AGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCAGATACTGATGGTATCCTTGT 607
Query 706 CTCCCAAATTGAGTTATCCGTTTAA 730
|| || ||||| ||||||||||||
Sbjct 608 TTCTCAGATTGAATTATCCGTTTAA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5