BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16453.1

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488499 jgi|Araly1|488499|fgenesh2_kg.6__1633__AT5G16453.1         510    3e-144


> Ahg488499 jgi|Araly1|488499|fgenesh2_kg.6__1633__AT5G16453.1
Length=369

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 340/370 (92%), Gaps = 7/370 (2%)
 Strand=Plus/Plus

Query  45   TCATAAAGTAATCTTGTAGAG--TTGAAAGAT--TA-AAAAATGGCCTCCTCAAAATTCG  99
            |||||||  ||||||||||||  |||||||||   | |||||||| ||||||||||||||
Sbjct  1    TCATAAACAAATCTTGTAGAGAATTGAAAGATAAAATAAAAATGGTCTCCTCAAAATTCG  60

Query  100  TTCTTTTTGCTATCCTAGCTCTGTCTCTTCTACTTTCCGGTACCGAAGCAAGAAAGACCG  159
            || ||||||||||||||||||| |||||||||||| | ||||| ||||||||||||||||
Sbjct  61   TTATTTTTGCTATCCTAGCTCTCTCTCTTCTACTTGCAGGTACTGAAGCAAGAAAGACCG  120

Query  160  TGTGGCCTAGCAGCGAATTAGACCCAAAGTGTTGCAGCAATCAGCCAGAATTTGGTATAT  219
            ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||
Sbjct  121  TGTGGCCTAGCAGCGAATTAGACCCAAAGTGTTGCAGCCCTCAGCCAGAATTTGGTAAAT  180

Query  220  GTGATTCAAAAGAAGATGATGAAAGATGCGCCCAGATGTGTCTGGATGGTTGTCCCACTA  279
            ||||  |||||||||||||| ||| |||| | |||||||| || ||||||||||||||||
Sbjct  181  GTGAAACAAAAGAAGATGATCAAAAATGCACTCAGATGTGCCTTGATGGTTGTCCCACTA  240

Query  280  ACAAAGGTGGTGGCTGCCAACCTATTACTGAAGCCCCTGGTGCTGTTTGTTCTTGTTACT  339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACAAAGGTGGTGGCTGCCAACCTATTACTGAAGCCCCTGGTGCTGTTTGTTCTTGTTACT  300

Query  340  GCGCTTAACTCTTCTTCTTGGCTTTATTGATTCATAAGGAAAAAA-TATAGTTTTTGTAT  398
            |||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct  301  GCGCTTAACTCTTCTTCTTGGCTTTATTGATTCATAAGTAAAAAAGTTTA-TTTTTGTAT  359

Query  399  CCATCTTCAA  408
            ||| ||||||
Sbjct  360  CCAGCTTCAA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15681947079


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5