BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16460.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488500 jgi|Araly1|488500|fgenesh2_kg.6__1634__AT5G16460.1 1722 0.0
> Ahg488500 jgi|Araly1|488500|fgenesh2_kg.6__1634__AT5G16460.1
Length=1204
Score = 1722 bits (932), Expect = 0.0
Identities = 1135/1229 (92%), Gaps = 30/1229 (2%)
Strand=Plus/Plus
Query 3 GAGAATCCTCCAAAACAAAACAATGAAAGAACAAGACAACCAACTCAAAATCCCTGAACC 62
||||||||||| |||||| ||||||||| |||| |||||| ||||||||||||| |||||
Sbjct 1 GAGAATCCTCCCAAACAAGACAATGAAACAACAGGACAACGAACTCAAAATCCCCGAACC 60
Query 63 ATTACGAGCTGACTGGTTCATGGTTCTAGTCACCATCCAAGCTGATCTAATCTACAACGC 122
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ATTACGAGCCGACTGGTTCATGGTTCTAGTTACCATCCAAGCTGATCTAATCTACAACGC 120
Query 123 ACTCGTGGTATTATCCTCACCTTTCTTTCTCCTATACCGCTCTTACCGCCGCGCAGTCGT 182
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 121 ACTCGTGGTATTATCCTCACCTTTCTTTCTCCTCTACCGCTCCTACCGCCGCGCAGTCGC 180
Query 183 TACCGTCTCCGCAGCAGAAAAAGCGGTTAAACGTGCTCCAGCGCAGATAGCTGGTGGTGC 242
||| |||||||| || ||||||||||||||||| ||||| | | |||||| ||||||||
Sbjct 181 TACTGTCTCCGCGGCGGAAAAAGCGGTTAAACGGGCTCCCTCCCGGATAGCGGGTGGTGC 240
Query 243 GGGGCGGGTTGTTAGGAGGACATGGTTTGGTATATTGGGTGCATGCCACGTGTCAATGGT 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GGGGCGGGTTGTTAGGAGGACATGGTTTGGGATATTGGGTGCATGCCACGTGTCAATGGT 300
Query 303 AATGGTGTTGGCTTTGATTTTGGCGGTTGTTATTGGTGTTGGGATTGTGAGTTTGTATGT 362
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GATGGTGTTGGCATTGATTTTGGCGGTTGTTATCGGTGTTGGGATTGTGAGTTTGTATGT 360
Query 363 AGAAAAGCCTGTGGTTGTGAGAGACAGATTGTTCTTTGATTACACTGAAGAAAACCCCAG 422
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 AGAAAAGCCGGTGGTTGTGAGAGACAGATTGTTCTTTGATTACACTGAAGAAAACCCAAG 420
Query 423 TGCGGTTTTTAGTTTTGATAAGAAGAAGAGATCGTTTAGTGTTCCTGTTGGTCATAGTGT 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 TGCGGTTTTTAGTTTTGATAAGAAGAAGAGATCGTTTAGTGTTCCTGTTGGTCATAACGT 480
Query 483 TCATGTCTCTTTAGTGCTTTGGATGCCTGAATCTGAAATTAATCGAAGAATTGGAGTATT 542
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 481 TCATGTCTCTTTGGTGCTTTGGATGCCTGAATCTGAAATTAATCGAAGAATTGGGGTGTT 540
Query 543 TCAGTTGAAAGTAGAGCTTTTATCGTTGAAAGGCGAGACAATCGCGAGATCGAGCCAACC 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 TCAGTTGAAAGTAGAGCTTTTATCGTTGAAAGGTGAGACAATCGCGAGATCGAGCCAACC 600
Query 603 TTGTATGTTACGGTTCAGAAGCAAACCTATAAGACTTGCACGAACATTTGTGATGAGTGT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTATGTTACGGTTCAGAAGCAAACCTATAAGACTTGCACGAACATTTGTGATGAGTGT 660
Query 663 TCCACTTATAGCCGGGATAGCAAACGAAGCACAAACAATGAGAATCGATGCATTAAAGCA 722
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCACTTATAGCCGGAATAGCAAACGAAGCACAAACAATGAGAATCGATGCATTAAAGCA 720
Query 723 CCAAGAGAAAATG-CCAAGGACAAAAGCCGTGAGAGCGACTCTGATTCCGCGTGCACAAA 781
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCATGAGAAA-TGGCCAAGGACAAAAGCCGTGAGAGCGACTCTGATTCCGCGTGCACAAA 779
Query 782 CTCGGACATTGCCTCAGTTATATGAAGCAGAGATCGTTATAAACTCAAAACCGCCCTGGA 841
|| |||||||||||||| ||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 780 CTTGGACATTGCCTCAGCTATATGAAGCAGAAATCGTTTTAAACTCAAAACCGCCATGGA 839
Query 842 TTAAACGAATGGCTTATAACTGGAAATGGACTCTTTGCGTATGGACTTCAATGTACCTTT 901
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 840 CTAAACGAATGGCTTATAATTGGAAATGGACTCTTTGCGTCTGGACTTCAATGTATCTTT 899
Query 902 ACGTCGCGATTTTGACCGCACTTCTTTGGTGTTTTAGACCGGTTTTGTTCCCTTACACTT 961
||||||| ||||| || || ||||||||| |||||||||||||||||||||||||||||
Sbjct 900 ACGTCGCTATTTTAACAGCGTTTCTTTGGTATTTTAGACCGGTTTTGTTCCCTTACACTT 959
Query 962 CCTCAAGAACCATTTCGGAGAGCGAAAACTTAGAGATCGAAGTAGTTGAAGAAGAACAAG 1021
|||||||| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CCTCAAGATTTACTGCAGAGAGCGAAAACTTAGAGATCGAAGTAGTTGAAGAAGAACAAG 1019
Query 1022 AACAAGTCATGGAAAGACGACGGAGGGAAAGAAGAAACCAGCCTCGTCGAAGAAATTTTG 1081
|| || |||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1020 AA---GTAATGGAAAGACGACGGAGGGAAAGAAGAAACCAGCCTCGTCAAAGAAGTTTTG 1076
Query 1082 CTACTACACAGAAAAGTTATACATAGTAACA-AGAT-T-CTTCGtttttttGGGGTCAAA 1138
||||||||||||||||||||||||||| ||| | || | ||||||||||| ||| |||||
Sbjct 1077 CTACTACACAGAAAAGTTATACATAGTCACATAAATATTCTTCGTTTTTT-GGG-TCAAA 1134
Query 1139 TTGTAAGAAAGTGGCAATAGTAATAGTAAATAACAAGAACTACAAAGAATTGTGAATACC 1198
|| || | | |||| | ||| || || | || || |||||||||||||||
Sbjct 1135 TT--AA-----T---A---GTAA-A-TAAC-AAGAA-A-CTCCAGAGAATTGTGAATACC 1176
Query 1199 TTTTACGGTTTTAAA-TAGTGAGAAGAAG 1226
||||||||||| ||| |||||||||||||
Sbjct 1177 TTTTACGGTTT-AAAGTAGTGAGAAGAAG 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5