BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16460.1 Length=1231 Score E Sequences producing significant alignments: (Bits) Value Ahg488500 jgi|Araly1|488500|fgenesh2_kg.6__1634__AT5G16460.1 1722 0.0 > Ahg488500 jgi|Araly1|488500|fgenesh2_kg.6__1634__AT5G16460.1 Length=1204 Score = 1722 bits (932), Expect = 0.0 Identities = 1135/1229 (92%), Gaps = 30/1229 (2%) Strand=Plus/Plus Query 3 GAGAATCCTCCAAAACAAAACAATGAAAGAACAAGACAACCAACTCAAAATCCCTGAACC 62 ||||||||||| |||||| ||||||||| |||| |||||| ||||||||||||| ||||| Sbjct 1 GAGAATCCTCCCAAACAAGACAATGAAACAACAGGACAACGAACTCAAAATCCCCGAACC 60 Query 63 ATTACGAGCTGACTGGTTCATGGTTCTAGTCACCATCCAAGCTGATCTAATCTACAACGC 122 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 ATTACGAGCCGACTGGTTCATGGTTCTAGTTACCATCCAAGCTGATCTAATCTACAACGC 120 Query 123 ACTCGTGGTATTATCCTCACCTTTCTTTCTCCTATACCGCTCTTACCGCCGCGCAGTCGT 182 ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 121 ACTCGTGGTATTATCCTCACCTTTCTTTCTCCTCTACCGCTCCTACCGCCGCGCAGTCGC 180 Query 183 TACCGTCTCCGCAGCAGAAAAAGCGGTTAAACGTGCTCCAGCGCAGATAGCTGGTGGTGC 242 ||| |||||||| || ||||||||||||||||| ||||| | | |||||| |||||||| Sbjct 181 TACTGTCTCCGCGGCGGAAAAAGCGGTTAAACGGGCTCCCTCCCGGATAGCGGGTGGTGC 240 Query 243 GGGGCGGGTTGTTAGGAGGACATGGTTTGGTATATTGGGTGCATGCCACGTGTCAATGGT 302 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 GGGGCGGGTTGTTAGGAGGACATGGTTTGGGATATTGGGTGCATGCCACGTGTCAATGGT 300 Query 303 AATGGTGTTGGCTTTGATTTTGGCGGTTGTTATTGGTGTTGGGATTGTGAGTTTGTATGT 362 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 301 GATGGTGTTGGCATTGATTTTGGCGGTTGTTATCGGTGTTGGGATTGTGAGTTTGTATGT 360 Query 363 AGAAAAGCCTGTGGTTGTGAGAGACAGATTGTTCTTTGATTACACTGAAGAAAACCCCAG 422 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 361 AGAAAAGCCGGTGGTTGTGAGAGACAGATTGTTCTTTGATTACACTGAAGAAAACCCAAG 420 Query 423 TGCGGTTTTTAGTTTTGATAAGAAGAAGAGATCGTTTAGTGTTCCTGTTGGTCATAGTGT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 421 TGCGGTTTTTAGTTTTGATAAGAAGAAGAGATCGTTTAGTGTTCCTGTTGGTCATAACGT 480 Query 483 TCATGTCTCTTTAGTGCTTTGGATGCCTGAATCTGAAATTAATCGAAGAATTGGAGTATT 542 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || Sbjct 481 TCATGTCTCTTTGGTGCTTTGGATGCCTGAATCTGAAATTAATCGAAGAATTGGGGTGTT 540 Query 543 TCAGTTGAAAGTAGAGCTTTTATCGTTGAAAGGCGAGACAATCGCGAGATCGAGCCAACC 602 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 541 TCAGTTGAAAGTAGAGCTTTTATCGTTGAAAGGTGAGACAATCGCGAGATCGAGCCAACC 600 Query 603 TTGTATGTTACGGTTCAGAAGCAAACCTATAAGACTTGCACGAACATTTGTGATGAGTGT 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTGTATGTTACGGTTCAGAAGCAAACCTATAAGACTTGCACGAACATTTGTGATGAGTGT 660 Query 663 TCCACTTATAGCCGGGATAGCAAACGAAGCACAAACAATGAGAATCGATGCATTAAAGCA 722 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCCACTTATAGCCGGAATAGCAAACGAAGCACAAACAATGAGAATCGATGCATTAAAGCA 720 Query 723 CCAAGAGAAAATG-CCAAGGACAAAAGCCGTGAGAGCGACTCTGATTCCGCGTGCACAAA 781 ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CCATGAGAAA-TGGCCAAGGACAAAAGCCGTGAGAGCGACTCTGATTCCGCGTGCACAAA 779 Query 782 CTCGGACATTGCCTCAGTTATATGAAGCAGAGATCGTTATAAACTCAAAACCGCCCTGGA 841 || |||||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| Sbjct 780 CTTGGACATTGCCTCAGCTATATGAAGCAGAAATCGTTTTAAACTCAAAACCGCCATGGA 839 Query 842 TTAAACGAATGGCTTATAACTGGAAATGGACTCTTTGCGTATGGACTTCAATGTACCTTT 901 |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| Sbjct 840 CTAAACGAATGGCTTATAATTGGAAATGGACTCTTTGCGTCTGGACTTCAATGTATCTTT 899 Query 902 ACGTCGCGATTTTGACCGCACTTCTTTGGTGTTTTAGACCGGTTTTGTTCCCTTACACTT 961 ||||||| ||||| || || ||||||||| ||||||||||||||||||||||||||||| Sbjct 900 ACGTCGCTATTTTAACAGCGTTTCTTTGGTATTTTAGACCGGTTTTGTTCCCTTACACTT 959 Query 962 CCTCAAGAACCATTTCGGAGAGCGAAAACTTAGAGATCGAAGTAGTTGAAGAAGAACAAG 1021 |||||||| | | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CCTCAAGATTTACTGCAGAGAGCGAAAACTTAGAGATCGAAGTAGTTGAAGAAGAACAAG 1019 Query 1022 AACAAGTCATGGAAAGACGACGGAGGGAAAGAAGAAACCAGCCTCGTCGAAGAAATTTTG 1081 || || |||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1020 AA---GTAATGGAAAGACGACGGAGGGAAAGAAGAAACCAGCCTCGTCAAAGAAGTTTTG 1076 Query 1082 CTACTACACAGAAAAGTTATACATAGTAACA-AGAT-T-CTTCGtttttttGGGGTCAAA 1138 ||||||||||||||||||||||||||| ||| | || | ||||||||||| ||| ||||| Sbjct 1077 CTACTACACAGAAAAGTTATACATAGTCACATAAATATTCTTCGTTTTTT-GGG-TCAAA 1134 Query 1139 TTGTAAGAAAGTGGCAATAGTAATAGTAAATAACAAGAACTACAAAGAATTGTGAATACC 1198 || || | | |||| | ||| || || | || || ||||||||||||||| Sbjct 1135 TT--AA-----T---A---GTAA-A-TAAC-AAGAA-A-CTCCAGAGAATTGTGAATACC 1176 Query 1199 TTTTACGGTTTTAAA-TAGTGAGAAGAAG 1226 ||||||||||| ||| ||||||||||||| Sbjct 1177 TTTTACGGTTT-AAAGTAGTGAGAAGAAG 1204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45976237902 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5