BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16470.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488501 jgi|Araly1|488501|fgenesh2_kg.6__1635__AT5G16470.1 966 0.0
Ahg477521 jgi|Araly1|477521|fgenesh2_kg.3__222__AT3G02790.1 222 2e-57
> Ahg488501 jgi|Araly1|488501|fgenesh2_kg.6__1635__AT5G16470.1
Length=634
Score = 966 bits (523), Expect = 0.0
Identities = 604/639 (95%), Gaps = 21/639 (3%)
Strand=Plus/Plus
Query 1 CCCAAATCGTTCTCTCTCAAATCGCAAAATTAGGGTTAGGGTTTTCAATTCCCCAACCTT 60
|||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 CCCAAATCCTTCTCTCTC-AATCACAAAATTAGGGTTAGGGTTTTCAATTCCCCCACCTT 59
Query 61 GCGAATTTCTCATTTCTCGTAGCCGCCGCAGCAATCAACGATGACAGGCAAAGCAAAGCC 120
||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 60 GCGAAGTTCTCATTTCTCGTAGCCGCCGCCGCCATCGACGATGACAGGCAAAGCAAAGCC 119
Query 121 AAAGAAGCACACAGCGAAGGAGCTCCAAGCTAAAGCCGATGCAGCGTTGACCAATCGCGG 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AAAGAAGCACACAGCGAAGGAGCTCCAAGCAAAAGCCGATGCAGCGTTGACCAATCGCGG 179
Query 181 TGGAGGAAAGGCAGGGCTCGCCGATAGAACCGGTAAGGAGAAAGGTGGTCACGCAAAGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CGGAGGAAAGGCAGGGCTCGCCGATAGAACCGGTAAGGAGAAAGGTGGTCACGCTAAGTA 239
Query 241 CGAGTGTCCTCACTGCAAGATCACTGTACCGGATCTAAAGACGATGCAGATCCATCATGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGAGTGTCCTCACTGCAAGATCACTGTACCGGATCTAAAGACGATGCAGATCCATCATGA 299
Query 301 ATCGAAGCATCCAAAGCTGACTTATGAAGAGCCGAGGAATCTTCATGAGGCTTTAGCTGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCGAAGCATCCAAAGCTGACTTATGAAGAGCCGAGGAATCTTCATGAGGCTTTAGCTGC 359
Query 361 TCCTGCTGAATCATCTAAGCCTAAGCCTGGAATCAGAGGAAGCCTTAAGAAGTGAAGTGA 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTGCTGAATCGTCTAAGCCTAAGCCTGGAATCAGAGGAAGCCTTAAGAAGTGAAGTGA 419
Query 421 AGATGGTTTGGG-ATTGTATCGAATTTCGATTTGAAATTTGTGGTCTTTTTAATGGTGTT 479
||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 AGATG-TTTGGGGATTGTATCGAATTTCGATTTGAAATTTGTGGTCTTTT-AATGGTGTT 477
Query 480 TTGATGTGAGAATATAAACTTGCGTTGATGATGC-T----CT-ATGTC--T-T-CGTATT 529
||||||||||||||||||||||||||||||||| | || ||||| | | ||||||
Sbjct 478 TTGATGTGAGAATATAAACTTGCGTTGATGATGGATGATGCTTATGTCCATCTTCGTATT 537
Query 530 TTTATGTTATGATCATATAAAAAAGTAACTGATATTT-T---CTT-ATTAAATGGTTTGT 584
|||||||||||||||||||||| ||||||||||||| | ||| || |||||||||||
Sbjct 538 TTTATGTTATGATCATATAAAA--GTAACTGATATTTATTTTCTTTATAAAATGGTTTGT 595
Query 585 TTCTAACTTATTGGTTTCTTTTGATTCTTGTTTCTGGAT 623
||||||||||| |||||||||||||||||||||||||||
Sbjct 596 TTCTAACTTATGGGTTTCTTTTGATTCTTGTTTCTGGAT 634
> Ahg477521 jgi|Araly1|477521|fgenesh2_kg.3__222__AT3G02790.1
Length=538
Score = 222 bits (120), Expect = 2e-57
Identities = 193/229 (84%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 100 GATGACAGGCAAAGCAAAGCCAAAGAAGCACACAGCGAAGGAGCTCCAAGCTAAAG-CCG 158
|||||| || || || |||||||||||||| |||||||||||| | ||||| ||| ||
Sbjct 65 GATGACTGGTAAGGCGAAGCCAAAGAAGCATACAGCGAAGGAGATTCAAGC-GAAGATCG 123
Query 159 ATGCAGCGTTGACCAATCGCGGTGGAGGAAAGGCAGGGCTCGCCGATAGAACCGGTAAGG 218
|||| |||||||| |||||||| |||||||| || || |||| ||| | ||||| || |
Sbjct 124 ATGCTGCGTTGACTAATCGCGGCGGAGGAAAAGCTGGAATCGCTGATCGGACCGGAAAAG 183
Query 219 AGAAAGGTGGTCACGCAAAGTACGAGTGTCCTCACTGCAAGATCACTGTACCGGATCTAA 278
||||||| |||||||| |||||||||||||| || ||||| ||||| | |||||||||||
Sbjct 184 AGAAAGGAGGTCACGCTAAGTACGAGTGTCCACATTGCAAAATCACGGCACCGGATCTAA 243
Query 279 AGACGATGCAGATCCATCATGAATCGAAGCATCCAAAGCTGACTTATGA 327
||||||||||||||||||| ||||| |||||||| ||| | | ||||||
Sbjct 244 AGACGATGCAGATCCATCACGAATCCAAGCATCCTAAGATCATTTATGA 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5