BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16480.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488502 jgi|Araly1|488502|fgenesh2_kg.6__1636__AT5G16480.1 1221 0.0
> Ahg488502 jgi|Araly1|488502|fgenesh2_kg.6__1636__AT5G16480.1
Length=1014
Score = 1221 bits (661), Expect = 0.0
Identities = 947/1072 (88%), Gaps = 72/1072 (7%)
Strand=Plus/Plus
Query 17 AtttttttCCAAATCCGAAAAAATCTCTTAACaaaaaaaCTCCTTAATCTTCGTCATCTT 76
||||||||||||||||| | ||||||| | || |||| |||||| ||||||||||||| |
Sbjct 1 ATTTTTTTCCAAATCCGCAGAAATCTC-T-ACCAAAACACTCCTAAATCTTCGTCATC-T 57
Query 77 TTTGTCTCTTT-TTAAAAA-A-T-AAT------TAAACCCCACTTGATGATTATCCCATT 126
||||||||||| | ||||| | | ||| ||| ||||||||||||||||||||
Sbjct 58 TTTGTCTCTTTATAAAAAAGATTAAATAAAAAAAAAAAACCACTTGATGATTATCCCATA 117
Query 127 AATCATTTAAAGGtttttttttttctttttgttcaa-cgaatctctatctctctctagat 185
|| ||| |||| ||||||||||| | ||||||| ||||||| | |||
Sbjct 118 AACCATATAAA--------------TTTTTGTTCAATC-AATCTCTCTCTCTCTATTGAT 162
Query 186 tttggggattttgctctctctccctctctgtctctctTTGGTGCTCGTAGCTTTCTGTCT 245
||||||||||||| |||||| || | || | |||||||| |||||||| |
Sbjct 163 TTTGGGGATTTTG--CTCTCT--CT-T-TG--------T--TGCTCGTATCTTTCTGTTT 206
Query 246 CCCAATTGAGAGAAGGAGGGAGATAGAAACGTCGATGGGCTTAATTGTGGATGATGATAA 305
|||||| |||||| ||||||||| ||||| | |||||||||||| || | |||||||
Sbjct 207 CCCAATAGAGAGACGGAGGGAGAGAGAAA--TTGATGGGCTTAATCGT-G--GATGATAG 261
Query 306 CGATGGAGAAGTTTTGATTCCGCCGCCGAATTTTTCAATGGTAGAAGATGAAATTTACCG 365
||| |||||||||||||| ||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 262 CGACGGAGAAGTTTTGATCCCGCCGCCGAATTTTTCGATGGTAGAAGACGGGATTTATCG 321
Query 366 ATCTGGGTTTCCTGAGCTGGAGAATTTCGGATTCTTATCAACCCTAAATCTTCGATCCAT 425
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ATCTGGGTTTCCTCAGCTGGAGAATTTCGGATTCTTATCAACCCTAAATCTTCGATCCAT 381
Query 426 CATTTATCTGTGTCCTGAGCCATACCCTGAGGACAATCTCAAGTCTCTTGC-ATCCAACA 484
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 382 CATTTATCTGTGTCCTGAACCATACCCTGAGGACAATCTCAAGTCTCTT-CAATCCAACA 440
Query 485 ACATTAAGCTTTTCCAGTTCGGGATTGAAGGCAAAACGGATCCTCCAACTCCTATGCCAA 544
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACATTAAGCTTTTTCAGTTCGGGATTGAAGGCAAAACGGATCCTCCAACTCCTATGCCAA 500
Query 545 AGGATACAGTGTTGAGTGCTCTTAGAGTACTAGTTGATGTTCGAAATCATCCAATTCTTA 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 AGGATACAGTGTTGAGTGCTCTTAGAGTACTAGTTGATGTTCGAAATCATCCAATTCTCA 560
Query 605 TCCACTGTAAGCGCGGAAAGCATAGGACAGGTTGTCTTGTGGGATGCTTGAGGAAAGTGC 664
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TCCACTGTAAGCGCGGGAAGCATAGGACAGGTTGTCTTGTGGGATGCTTGAGGAAAGTGC 620
Query 665 AGAACTGGTGCTTGTCATCGGTTCTCGAGGAATACCAGAAGTGTGCGGGTTTGAAATGGA 724
| |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 621 AAAACTGGTGTTTGTCATCGGTTCTTGAGGAATATCAAAAGTGTGCGGGTTTGAAATGGA 680
Query 725 GACAAAGAGATTTAAGGTTCATTGAGGATTTCGATGTGCTCAGATTGAAGCAATGTCTAT 784
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 681 GACAAAGAGATTTAAGGTTCATAGAGGATTTTGATGTGCTCAGATTGAAGCAATGTCTAT 740
Query 785 ACAGCATCATATATCAGTACAATGGGTATGGTCTCAAGAGAAGAAAGTTGCTGTATCAAG 844
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACAGCATTATCTATCAGTACAATGGGTATGGTCTCAAGAGAAGAAAGTTGCTGTATCAAG 800
Query 845 AAGAGAATGTTGTTCAAGAACAGCAAAAACCTCAAGCCACCAAAGGATAAAGAAAGAGAT 904
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 801 AAGAGAATGTTGTTCAAGAACAGCAAAAACCTCAAGCCACCAAAGGGTGAAGAAAGAGAT 860
Query 905 TTGAAATCGGAtttttttttgtttctttacattttgtcgtgatgatgatgatgatttttt 964
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 861 TTGAAATCGGATTTTTTTTTGTTTCTTTACATTTTGTCGTGTTGATGATGATGATTCTTT 920
Query 965 tgaGAATAGGATAGTTCTTTAAAAAGCTTGAGAAAACAGAGGATTTGATTTGGTCTCTCT 1024
|||||||||||||| |||| | ||| | | |||||||||||||| |||
Sbjct 921 TGAGAATAGGATAG------AAAA---T--AGA-----G-G-ATTTGATTTGGTCTGTCT 962
Query 1025 CTATCtttt-tttt-ACGGTTAGAGAAATTTACAGATTGATTCTTAATTGTT 1074
| | |||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 963 ATCTTTTTTCTTTTTACAGTTAGAGAAATTTACAGATTGATTCTTAATTGTT 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5