BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16490.1

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326092 jgi|Araly1|326092|fgenesh1_pm.C_scaffold_6001312           721    0.0  


> Ahg326092 jgi|Araly1|326092|fgenesh1_pm.C_scaffold_6001312
Length=462

 Score =  721 bits (390),  Expect = 0.0
 Identities = 438/462 (95%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  9    ATGAGAGATAGAATGGAGAGACTTGTGGTGCTTCCTTTCTCCATCGGATGTATCTCCGTC  68
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct  1    ATGAGAGATAGAATGGAGAGACTTGTGGTGCTTCCTTTCTCCGTCGGATGTATCTCCGAC  60

Query  69   TCAAGTGTTGCCGTTTTGTCTCCTCTCTCTAAGCCTCATCATCATCACTCTCGTCAAGTG  128
            ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct  61   TCAAGTGTTGCCGTTTTATCTCCTCTCTCAAAGCCTCATCATCATCACTCTCGTCAAGAG  120

Query  129  ATTCGTGAACAAGAGGAGGAAGATAACATGAAGAATGTATTCAAGTTCCTTGCGGTTTCT  188
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATTCGTGATCAAGAGGAGGAAGATAACATGAAGAATGTATTCAAGTTCCTTGCGGTTTCT  180

Query  189  AAACCGGAGATTTCTATCGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAA  248
            || || |||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct  181  AAGCCCGAGATTTCTACCGGTATTAACCGGCTTTTCAAGAGCTTCAAGACCATTTCTCAA  240

Query  249  CTCTTTGCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAGGA  308
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  241  CTCTTTGCTGACAAAGAAGAAGAGAAGGAAGAAGTCGAGACATCAGGAATGGAGATAGGA  300

Query  309  GTTCCAACGAACGTAAAACATGTATCGCACATCGGTTGGGAAAGCGGTCTAACCGCGGCT  368
            ||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct  301  GTTCCCACAAACGTAAAACATGTATCGCACATCGGATGGGAAAGCGGTTTAACCGCGGCT  360

Query  369  ACAGGTCCTGGTAAAGGATGGGAAGATCTCATACCGCCGGAGTTGCTTGCAGCCGCTGCT  428
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  361  ACAGGTCCAGGTAAAGGATGGGAAGATCTCATACCACCGGAGTTGCTTGCAGCCGCTTCT  420

Query  429  TCaaaaaaaGAAATTAACCCTCATCTTCATCCAACTTTATAA  470
             ||||||||||  |||| ||||||||||| ||||||||||||
Sbjct  421  ACAAAAAAAGATGTTAATCCTCATCTTCACCCAACTTTATAA  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23178733536


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5