BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16500.1
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893562 jgi|Araly1|893562|Al_scaffold_0006_1558 2922 0.0
> Ahg893562 jgi|Araly1|893562|Al_scaffold_0006_1558
Length=1908
Score = 2922 bits (1582), Expect = 0.0
Identities = 1812/1921 (94%), Gaps = 23/1921 (1%)
Strand=Plus/Plus
Query 163 ATGATAATCATGATGAATTGTTTTCCGTGTTTCACTTCACAAAAGAGCAGAAACGCTCCA 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGATAATCATGATGAATTGTTTTCCGTGTTTCACTTCACAAAAGAGCAGAAACCCTCCC 60
Query 223 TGCACGACGAACGAGACTAACGATGATAACGTTGAACACGACGAATTCAGACCACCTGTT 282
|| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 TGTACGACGAACGATACTAACGA--A-AACGTTGAACACGACGAATTCAGACCACCTGTT 117
Query 283 GTTGCGACGACGAAACGGACTGAAGAAAGAGAACCTGCAGAGCAACAACCACCGGTGAAA 342
| ||||||||||||||| | ||||||||||||| |||||| | || | ||| |||||
Sbjct 118 GCTGCGACGACGAAACGAATTGAAGAAAGAGAA---ACAGAGC-A-AA-CGCCGTTGAAA 171
Query 343 ACATTCAATTTCCGGGAGTTAGCGACGGCGACCAAGAATTTCCGGCAAGAATGTCTTTTA 402
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 172 ACATTCAATTTCCGGGAGTTAGCGACGGCGACCAAGAATTTCCGACAAGAATGTCTTTTA 231
Query 403 GGAGAAGGTGGATTCGGTAGGGTTTACAAAGGAACTCTTCAATCTACTGGCCAGTTGGTA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GGAGAAGGTGGATTCGGTAGGGTTTACAAAGGAACTCTTCAATCTACTGGCCAGTTGGTA 291
Query 463 GCTGTAAAGCAGCTAGACAAGCATGGATTACATGGTAACAAAGAGTTTCTAGCTGAAGTC 522
|||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 292 GCTGTAAAGCAGCTGGACAAGCATGGACTACATGGTAACAAAGAGTTTCAAGCTGAAGTC 351
Query 523 TTGTCATTGGCTAAACTTGAACACCCGAATCTTGTTAAGCTTATAGGATACTGTGCTGAT 582
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 352 TTGTCATTGGCCAAACTCGAACACCCGAATCTTGTTAAGCTTATAGGATATTGTGCTGAT 411
Query 583 GGAGATCAACGGCTTTTAGTCTTTGAGTATGTCTCTGGAGGTTCCCTTCAAGACCATCTT 642
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGCGATCAACGGCTTTTAGTCTTTGAGTATGTCTCTGGAGGTTCCCTTCAAGACCATCTT 471
Query 643 TACGAACAAAAGCCAGGCCAGAAGCCGATGGATTGGATAACGAGGATGAAGATTGCGTTT 702
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 TACGAACAAAAGCCAGGCCAGAAGCCGATGAATTGGATAACGAGGATGAAGATTGCGTTT 531
Query 703 GGTGCAGCGCAAGGATTGGATTACTTGCACGATAAAGTTACTCCAGCGGTGATATACCGA 762
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 532 GGTGCAGCGCAAGGATTGGATTACTTGCACGATAAAGTTAATCCACCGGTGATATACCGA 591
Query 763 GATTTGAAAGCTTCTAACATCTTGTTAGATGCTGAGTTTTACCCTAAGCTTTGTGATTTT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GATTTGAAAGCTTCTAACATCTTGTTAGATGCTGAGTTTTACCCTAAGCTTTGTGATTTT 651
Query 823 GGTCTGCATAATCTAGAGCCAGGAACAGGTGATAGCTTGTTTCTTTCTTCCCGGGTTATG 882
||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 652 GGTATGCATAATCTAGAGCCAGGAACATGTGATAGCTTGTTTCTTTCTTCTCGGGTTATG 711
Query 883 GATACTTATGGTTATTCAGCACCTGAGTACACTCGAGGGGACGATCTCACTGTCAAGTCA 942
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 712 GATACTTATGGTTATTCCGCGCCTGAGTACACTCGAGGGGACGATCTCACTGTCAAGTCA 771
Query 943 GATGTTTATAGCTTCGGAGTTGTGTTGCTCGAACTCATCACCGGTAGAAGAGCTATTGAC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GATGTTTATAGCTTCGGAGTTGTGTTGCTCGAACTCATCACCGGTAGAAGAGCTATTGAC 831
Query 1003 ACCACTAAGCCTAATGATGAGCAAAATCTAGTTGCTTGGGCACAACCGATATTTAAAGAC 1062
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 832 ACCACTAAGCCTAATGATGAACAAAATCTAGTTGCTTGGGCACAACCGATATTTAGAGAA 891
Query 1063 CCGAAAAGATATCCGGATATGGCAGATCCTCTTTTGAGGAAGAATTTCTCAGAGAGAGGG 1122
||||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 892 CCGAAAAGATACCCGGATATGGCAGATCCTCTTATGAGGAAAAACTTCTCAGAGAGAGGG 951
Query 1123 TTAAATCAAGCAGTGGCAATAACATCAATGTGTCTACAAGAGGAACCAACTGCTCGTCCT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTAAATCAAGCAGTGGCAATAACATCAATGTGTCTACAAGAGGAACCAACTGCTCGTCCT 1011
Query 1183 TTGATAAGTGATGTAATGGTTGCTCTTAGCTTCCTTTCAATGTCTACAGAAGATGGTATT 1242
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1012 TTAATAAGTGATGTAATGGTTGCTCTTAGCTTCCTTTCAATGTCTACAGAAGACGGTATT 1071
Query 1243 CCAGCCACGGTTCCAATGGAATCGTTCAGGGACAAAAGTATGTCCATTGCTTTAAGCAGA 1302
||| |||| |||||||| ||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1072 CCAACCACAGTTCCAATTTTATCCTTCAGGGACAAAAGCATGTCGATTGCTTTAAGCAGA 1131
Query 1303 CACGGTTCTTGTTCTGTAACTCCATTTTGTATTTCTCGGAAAGATGTAGGCAACAAATCC 1362
||||||||||| |||||||||||||||||| ||||||||||||||| || ||| ||||||
Sbjct 1132 CACGGTTCTTGCTCTGTAACTCCATTTTGTCTTTCTCGGAAAGATGAAGACAAAAAATCC 1191
Query 1363 AGTTCTTCATCAGACTCGGAGGATgaagaagaagaaaaggaacaaaaagcagaaaaagaa 1422
||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1192 AGTTCTTCATCAGACTCAGAGGATGAAGAAGAAGAAAAAGAAGGAAAAGAAGAAAAAGAA 1251
Query 1423 gaagaa---tcaac-a--agtaagaaaagacaagagcaggaagaaaCCGCGACAGATTCA 1476
|||||| |||| | |||||||||| ||||||||||||||||||||| || ||||||
Sbjct 1252 GAAGAAGAATCAATGAGGAGTAAGAAAAAACAAGAGCAGGAAGAAACCGCTACGGATTCA 1311
Query 1477 GATGATGAGTCTGATTCAAACTCCGAAAAGGATCAAGAAGAGGAACAGTCTCAGTTAGAG 1536
||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||||||||
Sbjct 1312 GATGATGGGTCTGATTCAAACTCTGTAAAGGGTCAAGAAGAGGAACATTCTCAGTTAGAG 1371
Query 1537 AAAGCCAGGGAGTCTAGTAGCTCATCCTCTGACTCTGGAAGTGAGAGAAGATCAATTGAT 1596
|||||||| |||||| | ||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 1372 AAAGCCAGAGAGTCTTGCAGCTCCTCCTCTGACTCTGGAAGTGGGAGAAGATCCATTGAT 1431
Query 1597 GAAACAAACGCAACTGCTCAGAGCTTGAAGATAA-GTTACAGTAATTATAGCTCTGAGGA 1655
||||||||||||||||| |||||||||||||||| || ||||| | |||||||||||||
Sbjct 1432 GAAACAAACGCAACTGCACAGAGCTTGAAGATAAAGT-ACAGT--T-ATAGCTCTGAGGA 1487
Query 1656 AGAAGATAACGAGAAGCTAAGCAGTAAAAGCAGCTGTAAATCAAACGAAGAAAGCACTTT 1715
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1488 AGAAGATAACGAGAAGCTAAGCAGTAAAAGCAGCTCTACATCAAACGAAGAAAGCACTTT 1547
Query 1716 TTCGCGGTATGACAGCGGTAGAGATCACGATGATTCGTCAAGAAACACAAGCATGCGAAT 1775
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TTCGCGGTATGATAGCGATAGAGATCACGATGATTCGTCAAGAAACACAAGCATGCGAAT 1607
Query 1776 CAATAGTCTTGCTCATGATGATAAGGAGGAAGACGAGGAGGAGAATCATGAAACACGGAG 1835
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1608 CAATAGTCTTGCTCATGATGATAATGAGGAAGACGAGGAGGAGAATCATGAAACTCGGAG 1667
Query 1836 CTATAGTGATCACGATGATTCGCCAAGGAACACTAGCATGCGAATCAATAGTCTTTCTCA 1895
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 1668 CTATACAGATCACGATGATTCGCCAAGAAACACGAGCATGCGAATCAATAGTCTTGCTCA 1727
Query 1896 TGATGATGATGAGGAAGAGGAGGAGGAGAATCATCAAACTCGGCTTGAGCACATTCATAG 1955
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1728 TGATGATGATGAGGAAGACGAGGAGGAGAATCATGAAACTCGGCTTGAACACATTCATAG 1787
Query 1956 CTCGAAATCTGAAGACCAAAGTGTTTATTCAGATGATGATGCCGGCGA---AAGTGGTGA 2012
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1788 CTCGAAATCTGAAGACCAAAGTGTTTATTCAGATGATGATGCCGGCGAGGCAAGTGGTGA 1847
Query 2013 GTCGTCTTTGCATAGGATCGAAGCAAAGGAAGAAGAACATATTTCTTCTGACCATGATTA 2072
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1848 GTCGTCTTTGCATAGGATCGAAGCAGAGGAAGAAGAACACATTTCTTCTGATCATGATTA 1907
Query 2073 A 2073
|
Sbjct 1908 A 1908
Score = 152 bits (82), Expect = 1e-35
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1737 AGATCACGATGATTCGTCAAGAAACACAAGCATGCGAATCAATAGTCTTGCTCATGATGA 1796
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1674 AGATCACGATGATTCGCCAAGAAACACGAGCATGCGAATCAATAGTCTTGCTCATGATGA 1733
Query 1797 TAAGGAGGAAGACGAGGAGGAGAATCATGAAACACGG 1833
| | ||||||||||||||||||||||||||||| |||
Sbjct 1734 TGATGAGGAAGACGAGGAGGAGAATCATGAAACTCGG 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80179965725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5