BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16510.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488506 jgi|Araly1|488506|fgenesh2_kg.6__1640__AT5G16510.2 2049 0.0
> Ahg488506 jgi|Araly1|488506|fgenesh2_kg.6__1640__AT5G16510.2
Length=1466
Score = 2049 bits (1109), Expect = 0.0
Identities = 1211/1260 (96%), Gaps = 7/1260 (1%)
Strand=Plus/Plus
Query 74 GAAGAAAGCTTTTGAAGATCAGCCTAAAAGTGATCTCTCATAACTGCTTAAAAGATTGTT 133
||| |||||||||||||||||||||| |||| ||||||||| |||| ||| ||||| |||
Sbjct 153 GAAAAAAGCTTTTGAAGATCAGCCTAGAAGTTATCTCTCAT-ACTGTTTAGAAGATCGTT 211
Query 134 GAAACTCGAAGATGTCTTTGGCCGAGATAAACAAGAATGAAGTCGACATTGTTATTGGGG 193
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 212 GAAAATCGAAGATGTCTTCGGCCGAGATAAACAAGAATGAAGTCGACATTGTCATTGGGG 271
Query 194 CTCTTAATGCTGACCTTACACAGTTTTTGACCAGCTGGAGGCCTTTCTTCTCCGGATTCC 253
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 272 CTCTTAATGCTGACCTTACACAGTTTTTGACCAGCTGGAGGCCCTTCTTCTCTGGATTCC 331
Query 254 ATCTGATTGTTGTCAAAGATCCTGAGCTCAAGGAGGAACTCAACATACCAGAAGGCTTTG 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 ATCTGATTGTTGTCAAAGATCCTGAGCTCAAGGAGGAACTCAACATACCAGAAGGCTTTG 391
Query 314 ACGTAGATGTCTACTCTAAGACTGACATGGAAAAGGTTGTGGGCGCATCCAATTCCACCA 373
| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 392 ATGTAGATGTCTACTCAAAGACTGACATGGAAAAAGTTGTGGGCGCATCCAATGCCACCA 451
Query 374 TGTTCTCTGGCTATTCTTGCAGATATTTCGGTTATCTCGTATCTAAAAAGAAGTACATTG 433
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 452 TGTTCTCTGGCTATTCTTGCAGATATTTCGGTTATCTCATATCTAAAAAGAAGTACATTG 511
Query 434 TCTCTATTGATGATGATTGTGTCCCTGCTAAAGATCCGAAGGGGTTCCTAGTGGATGCTG 493
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 512 TCTCAATTGATGATGATTGTGTCCCTGCTAAAGATCCCAAGGGGTTCCTAGTGGATGCTG 571
Query 494 TTACTCAGCACGTGATCAACCTTGAAAACCCAGCCACGCCTCTCTTCTTCAACACCCTTT 553
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 572 TTACTCAGCACGTGATCAACCTCGAGAACCCTGCCACGCCTCTCTTCTTCAACACCCTTT 631
Query 554 ATGATCCTTACT-GCGAGGGAGCGGATTTTGTCCGTGGATACCCTTTCAGCCTCAGAAGT 612
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 ATGATCCTTA-TCGCGAGGGAGCGGATTTTGTCCGTGGATACCCTTTCAGCCTCAGAAGT 690
Query 613 GGTGTCCCTTGTGCTGCATCTTGTGGGCTTTGGCTTAATCTAGCTGATCTTGATGCTCCA 672
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 691 GGTGTCCCTTGTGCTGCATCTTGTGGACTTTGGCTTAATCTAGCTGATCTTGATGCTCCA 750
Query 673 ACACAAGCTCTCAAGACAGAGAAAAGGAACACTGCATATGTTGATGCGGTTATGACTGTC 732
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 751 ACACAAGCTCTCAAGACAGAGCAAAGGAACACTTCATATGTTGATGCGGTTATGACTGTC 810
Query 733 CCGGCCAAGGCTATGCTACCCATAAGCGGAATCAACATTGCTTTTAACCGCGAGTTGGTG 792
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 811 CCGGCCAAGGCTATGCTACCCATAAGCGGAATCAACATCGCTTTTAACCGCGAGTTGGTA 870
Query 793 GGTCCAGCTTTGGTGCCTGCACTCAGATTGGCTGGAGAAGGGAAAGTGAGATGGGAAACA 852
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 871 GGTCCAGCTTTGGTGCCTGCACTTAGATTGGCTGGAGAAGGGAAAGTGAGATGGGAAACA 930
Query 853 CTTGAAGATGTTTGGTGTGGGATGTGTCTGAAACATATCTCTGATCATTTGGGTTATGGT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CTTGAAGATGTTTGGTGTGGGATGTGTCTGAAACATATCTCTGATCATTTGGGTTATGGT 990
Query 913 GTGAAAACCGGACTGCCTTATGTGTGGAGAAACGAGAGAGGAGATGCAGTGGAGAGTTTG 972
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GTGAAAACCGGTCTGCCTTATGTGTGGAGAAACGAGAGAGGAGATGCAGTGGAGAGTTTG 1050
Query 973 AGGAAGAAATGGGAAGGAATGAAGCTGATGGAGAAAAGTGTTCCATTTTTCGATTCATTG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1051 AGGAAGAAATGGGAAGGAATGAAGCTGATGGAGAAAAGTGTTCCATTTTTCGAGTCATTG 1110
Query 1033 AAATTGCCCGAGACTGCGCTTAAAGTTGAAGATTGTGTGATTGAGCTTGCTAAAGCGGTG 1092
||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1111 AAATTGCCCGAGACTGCACTTAAAATTGAAGATTGTGTGATCGAGCTTGCTAAAGCGGTG 1170
Query 1093 AAAGAGCAGTTAGGTTCAGATGATCCTGCCTTTACGCAAGCTGCTGATGCTATGGTTAAG 1152
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1171 AAAGAGCAGTTGGGTTCAGATGATCCTGCCTTCACGCAAGCTGCTGATGCTATGGTTAAG 1230
Query 1153 TGGGTCCAGCTCTGGAATTCTGTTAATTCTAGCGCTTGAAGTTGAACAATCTCTTGAGGT 1212
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1231 TGGATCCAGCTCTGGAATTCTGTTAATTCTAGCTCTTGAAGTTGAACAATCTCTCGAGGT 1290
Query 1213 TAGGTTCCTTTATCACTTCTAAGCATATTATCATGTCTCAGAGATTTACCCAAGTCGTTT 1272
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1291 TAGGTTCCTTTATCACTTCTAAGCATATTATCGTGTCTCAGAGATTTACCAAAGTCGTTT 1350
Query 1273 TCTTTCTTTTAGTATCATCATGTTTATTTTCTCTTT-TTAT--CTAAATTATAAGCATGT 1329
||||||||||||||| ||||||||||||||||||| || | |||| ||||||||||||
Sbjct 1351 ACTTTCTTTTAGTATCCTCATGTTTATTTTCTCTTTATTTTTTCTAA-TTATAAGCATGT 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5