BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16520.1
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488508 jgi|Araly1|488508|fgenesh2_kg.6__1642__AT5G16520.1 3035 0.0
> Ahg488508 jgi|Araly1|488508|fgenesh2_kg.6__1642__AT5G16520.1
Length=1960
Score = 3035 bits (1643), Expect = 0.0
Identities = 1861/1967 (95%), Gaps = 11/1967 (1%)
Strand=Plus/Plus
Query 81 TGTGATGGCGTGCCCTAGAAACTCCATAACATACAACGCCACGCGCTGCGCGTGCGGTAT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTGATGGCGTGCCCTAGAAACTCCATAACATACAACGCCACGCGCTGCGCGTGCGGTAT 60
Query 141 CGGTCAGCTACTAAACCGGAGCTCCGGGAGCTGCGAGATCTTCGGTTGGCCGTCAACAAT 200
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 61 CGGTCAGCTGCTAAACCGGAGTTCCGGGAGCTGCGAGATCTTCGGTTGGCCGTCGACGAT 120
Query 201 CTCCACAGACAAAGATGTAAACTACAGCGTAATATCATTCGCCGAGACTTTATTCGCTTT 260
||| || ||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 121 CTCAACGGACAAAGATGTTAACTACAGCGTAATATCATTCGCCGATAATTTATTCGCTTT 180
Query 261 CGATAGGATCCGTAAGTTCACGCAATCTCAAGCTATTTTCTTAGAAGCTACGCTCGTGAT 320
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 181 CGATAGGATCCGTAAGTTCACGCAATCTCAAGCTGTTTTCTTAGAAGCCACGCTCGTGAT 240
Query 321 GCTTCTCTCCTGGTTAGTCTTTTGTTTCTTCCTGAGATTCACCAAACTCGGCGATGGTCG 380
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GCTTCTCTCCTGGTTAGTCTTTTGCTTCTTCCTGAGATTCACCAAACTCGGCGATGGTCG 300
Query 381 TAATGTCTGGTTTAATCTCCGTTGGTGGATTACTCGACTTGACGTCTTCTTCTCCACTAG 440
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TAATGTCTGGTTCAATCTCCGTTGGTGGATTACTCGCCTTGACGTCTTCTTCTCCACTAG 360
Query 441 ACATTGGCTCGATGATCAACAAATTGTCAAGAAACGTAAAACAGAACTTGGTGGAACATT 500
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACATTGGCTTGATGATCAACAAATTGTCAAGAAACGTAAAACAGAACTTGGTGGAACATT 420
Query 501 TTCTGTTGCGAGCTGGATTGTTTTCATTGGTTTATTCGCTGCGCTGCTTTATCAAATCAT 560
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 ATCTGTTGCGAGCTGGATTGTTTTCATTGGATTATTCGCTGCGCTGCTTTATCAAATCAT 480
Query 561 AACCAAGAGAACAATTGAAGTTCACAATGTGAGAGCTACTGGTTCTCCAGATTTGATCTC 620
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 AACCAAGAGAACAATTGAAGTTCACAATGTGAGAGCTACTGGTTCTCCGGATTTGATCTC 540
Query 621 ATTCGAGAACGATTTGGAGTTTAACATCACCGCTGTTTCGGATATGAGTTGCTCTAATTT 680
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 541 ATTCGAGAACGATTTGGAGTTTAACATTACTGCTGTTTCTGATATGAGTTGCTCTAATTT 600
Query 681 ACGCGGTATTGGGAACGTGGTCA-TGGGTAATCCCGGGTTTAGCGAGTTCAAAGTTGCTG 739
||||||||||||||| ||||||| | ||||||||||| || |||||||||||||||||||
Sbjct 601 ACGCGGTATTGGGAATGTGGTCACT-GGTAATCCCGGATTCAGCGAGTTCAAAGTTGCTG 659
Query 740 CTCTTTCTAGTTTAGGAAGCTATACTTGTAAGAATACAACTTCAGGACCAACAGTGAATT 799
||||||| |||||||||||||| |||||||||| ||||||||||| ||||| |||||||
Sbjct 660 CTCTTTCCCGTTTAGGAAGCTATGCTTGTAAGAACACAACTTCAGGGCCAACTGTGAATT 719
Query 800 TCAAATGTACCAAATGTCGTCTCACCAACGATTACATATATATCTCGTGGCATTTCGTTG 859
|||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 720 TCAAGTGTACCAAATGTCGTCTCACCAGTGATTATATCTATATCTCGTGGCATTTCGTTG 779
Query 860 ATCTTCCTGATTCGCCTGCTGCTGCTGTTGGATTTCAGTTTAACTTTACGTCTAAGAATG 919
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATCTTCCTGATTCGCCTGCCGCTGCTGTTGGATTTCAGTTTAACTTTACGTCTAAGAATG 839
Query 920 GACCTAACGAGAAGCATATGAGTTTTGTTAGTGGCACTCTGAGAAACGGAAGCATTCTCG 979
|| |||| ||||||||||||||||||||||||| |||||||||||||| ||||| || |
Sbjct 840 GAGATAACAAGAAGCATATGAGTTTTGTTAGTGGTACTCTGAGAAACGGGAGCATCCTTG 899
Query 980 ATGAAAGTCCGGTTACTTTCCGTGGAACCGAAGGGAATATATTGAAGTTTAATCTGTTTC 1039
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 ATGAAAGTCCAGTTACTTTCCGTGGAACCGAAGGGAACGTATTGAAGTTTAATCTGTTTC 959
Query 1040 CTCGGATTTACCATCATTTGCATGATCTAAAGCTAATCCAACCTCTCTTTCACGAGTTTA 1099
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 960 CTCGGATTTACCATCATTTGCATGATCTTAAGCTAATCCAACCTCTGTTTCACGAGTTTA 1019
Query 1100 TCCCTGGCTCTGTTTACCGAGACACTACTCAGCTTCAGGCATCTATGGGAAGGTCAACAG 1159
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1020 TCCCTGGCTCTGTTTACCGAGACACTACTCAACTTCAGGCATCTATGGGAAGGTCAACAG 1079
Query 1160 ATGGCATACTCAATACGACATTGTTCATCAACTATCTCTCTGCTTATATTGTTGAGATAG 1219
||||||||||||| || || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1080 ATGGCATACTCAACACCACGTTGTTCATCAACTATCTGTCTGCTTATATTGTTGAGATCG 1139
Query 1220 ACCATGAAAATATACTCGGTCCTGTTAGCTTCCTTGCCGATCTTGGTGGTTTGTATTGCA 1279
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 ACCATGAAAATATACTCGGTCCTGTTAGCTTCCTAGCCGATCTTGGTGGTTTGTATTGCA 1199
Query 1280 TCAGTATTGGCATATTTTTCTACCTACTAGTGCAGTGTGAGTACAGGATCAAGAAGCTGC 1339
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 TCAGTATTGGCTTATTTTTCTACCTACTAGTGCAGTGTGAGTATAGGATCAAGAAGCTGC 1259
Query 1340 GAAATGAAGATACTGTTTTCAGGAAGATAAGGAATCGTCGTAAAGCTCTAGATCACTGGG 1399
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAAACGAAGATACCGTTTTCAGGAAGATAAGGAATCGTCGTAAAGCTCTAGATCACTGGG 1319
Query 1400 ATAAACTGAGAAGATATGTTGCATACACATGGGATTGCAGCATATTGGTCGATGATGCCA 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATAAACTGAGAAGATATGTTGCATACACATGGGATTGCAGCATATTGGTCGATGATGCCA 1379
Query 1460 TCAAAACGACAAAGGTATCAGGAATGTGTGGTTTAACGAGACC-TCCAACATCTTCTAAT 1518
||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1380 TCAAAACGACAAATTTATCAGGAATTTGTGGTTTAACGAGACCCTC-AACATCTTCTAAT 1438
Query 1519 AGCTCGGAACACGGGGAATCGATCATGGCGAACAAGAAGCCTAACTTAGGTATTGAGAAG 1578
|||||||||| ||| ||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 1439 AGCTCGGAACGTGGGCAATCGATCATGTCGAACAAGAAACCTAACTTAAGTATTGAGAAG 1498
Query 1579 AATGTGATTTCACAACCTGCAAGTTTAGAACTGAGCTCTTTTGATTCGGCTTCTTCTCTG 1638
||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1499 AATGTAATTCCACAACCTGCAAGTCTAGAAATGAGCTCTTTTGATTCGGCTTCTTCTCTG 1558
Query 1639 GCTCATGGAGATAATTTCTCAAATAAAAAGAGTATAACTCATCCAA-TTTCTCATAGTGA 1697
|| ||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||
Sbjct 1559 GCGCATGGAGATAATTTCTCAAATAAGAAGAGTATGACTCATC-AAGTTTCTCATAGTGA 1617
Query 1698 AGACGTTTCAATCCCTCCACCTCCTCCAATGGAGTTCATTGATGGATCTTCTGGTTCAGA 1757
||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 1618 AGACGATTCAATCCCTCCACCTCCTCCAATGGAGTTCACTGAAGGGTCTTCTGGTTCAGA 1677
Query 1758 AGTGGACGCAATGGATATCAAGAATAAATTTCAACTTCTTTACGACTACAATGTATTGCT 1817
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1678 AGTGGACGCAATGGACATCAAGAAGAAATTTCAACTTCTTTACGACTACAATGTATTGCT 1737
Query 1818 TAGGGAAAAACTTTTAGAGACTCAGTCTTTGCTTAATACTTTGGCACCCAAACCAATAGC 1877
|||||||||||||||||| || ||||||||||||||| |||||||||||||| || | |
Sbjct 1738 TAGGGAAAAACTTTTAGACACACAGTCTTTGCTTAATGCTTTGGCACCCAAAGCA-T--C 1794
Query 1878 ATCATCATCTTCAACCGTGGAACGCAGTGCCTAGAACAACGAGGTTGTTTGACATGTATT 1937
||||||||||||||||| ||||| | |||||||||||| |||||||| |||||||||||
Sbjct 1795 ATCATCATCTTCAACCGCGGAACACGGTGCCTAGAACAT-GAGGTTGTCTGACATGTATT 1853
Query 1938 GTTTGTATACTCCCTGTAACTTCCACATTTATTGAACAAA-GGAATGACTAATGCTTGTT 1996
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1854 GTTTGTATACTCCCTGTAACTTCCACATTTATTGAACAAAAGGAATGACTAATGTTTGTT 1913
Query 1997 GTATCTTTGTGAATATACCTAGTTGCTAATAGTAACAAATTTTCGCT 2043
||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 1914 GTATCTTTGTGAATATACCAAGTTGCTAGTAGTAACACATTTTTGCT 1960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76828024165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5