BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16530.1 Length=1056 Score E Sequences producing significant alignments: (Bits) Value Ahg326097 jgi|Araly1|326097|fgenesh1_pm.C_scaffold_6001317 1664 0.0 > Ahg326097 jgi|Araly1|326097|fgenesh1_pm.C_scaffold_6001317 Length=1059 Score = 1664 bits (901), Expect = 0.0 Identities = 1008/1060 (95%), Gaps = 5/1060 (0%) Strand=Plus/Plus Query 1 ATGATAAATTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTCTATGTAGCC 60 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGATAAGTTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTATATGTAGCC 60 Query 61 TTAATCTTAGGCTATGGCTCTGTGAAATGGTGGCACATCTTCACGCGTGATCAATGTGAT 120 ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||| Sbjct 61 TTAATCTTAGGCTATGGTTCTGTGAAATGGTGGAACATCTTCACTCGTGATCAATGCGAT 120 Query 121 GCTATAAACCGTCTCGTTTGCTATTTCACCCTGCCGCTCTTCACCATTGAGTTCACGGCC 180 ||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 121 GCTATAAACCGGCTCGTTTGCTATTTCACCCTTCCGCTCTTCACAATCGAGTTCACGGCC 180 Query 181 CATGTCGACCCGTTCAACATGAATTACCGGTTCATCGCGGCCGATGTCCTCTCTAAGGTC 240 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 CATGTCGACCCATTCAACATGAATTACCGGTTCATCGCTGCCGATGTCCTCTCTAAGGTC 240 Query 241 ATCATAGTCACGGTCTTAGCGTTGTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 ATCATAGTCACGGTCTTAGCGTTTTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG 300 Query 301 TCCATTACTAGTTTCTCTCTATGCACTCTTACTAACTCTCTTGTCGTTGGTGTGCCATTG 360 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 301 TCCATTACTAGTTTCTCTCTATGCACTCTTACCAACTCTCTGGTCGTTGGTGTGCCATTG 360 Query 361 GCTAAGGCAATGTACGGACAACAGGCTGTTGATCTGGTGGTTCAATCCTCGGTATTTCAA 420 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 361 GCTAAGGCAATGTACGGACAACAGGCTGTCGATCTCGTGGTTCAATCCTCGGTATTTCAA 420 Query 421 GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGTTTAGAAAAGCCGGATTTAGT 480 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 421 GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGCTTAGAAAAGCCGGATCTAGT 480 Query 481 AGTAATAATATCAGCGACGTACAA-GTAGACAACATCAATATCGAAAGTGGAAAAAGAGA 539 |||||| ||| |||||||||| || ||||||| |||||||||||||| ||||||||||| Sbjct 481 AGTAATTATAGCAGCGACGTA-AAGGTAGACAGCATCAATATCGAAAACGGAAAAAGAGA 539 Query 540 AACTGTGGTTGT-GG-GA-GAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA 596 || ||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AATTGTGGTTGTGGGAGAGGAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA 599 Query 597 GCTTGCAACGAATCCAAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTTTTATTTC 656 ||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 600 GCTTGCAACAAATCCGAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTCTTATTTC 659 Query 657 TAACAGATGGCATCTGGAGCTGCCGGGCATATTAGAGGGTTCGATTCTTATAATGTCAAA 716 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 660 TAACAGATGGCATCTGGAGATGCCGGGCATATTAGAGGGATCGATTCTTATAATGTCAAA 719 Query 717 AGCAGGAACAGGAACGGCCATGTTCAATATGGGAATATTCATGGCACTTCAAGAAAAGTT 776 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 720 AGCAGGAACAGGAACCGCCATGTTCAATATGGGGATATTCATGGCACTTCAAGAGAAGTT 779 Query 777 GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTATTGAAGTTTATTGCCGGACC 836 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 780 GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTCTTGAAGTTTATTGCCGGACC 839 Query 837 GGCGGCCATGGCCATCGGCTCTATTGTCCTTGGCCTCCACGGTGATGTCCTCCGCGTAGC 896 || |||||||||||||| ||||| | ||||||||||||||| ||||||||||||| || Sbjct 840 TGCCGCCATGGCCATCGGTTCTATCGCCCTTGGCCTCCACGGCAATGTCCTCCGCGTTGC 899 Query 897 CATCATTCAGGCTGCTTTGCCACAATCGATTACTTCGTTCATTTTTGCTAAGGAATATGG 956 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 900 CATCATTCAGGCTGCTTTGCCACAATCGATCACTTCGTTCATTTTTGCTAAGGAATATGG 959 Query 957 ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTTGGGATGTTGGTCTCTCTACCTGT 1016 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 960 ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTCGGGATGTTGGTTTCTCTGCCTGT 1019 Query 1017 GCTCGTCGCCTACTACGCAGCTCTGGAGTTTATTCATTGA 1056 ||||||||| |||||||||||||||||||||||||||||| Sbjct 1020 GCTCGTCGCTTACTACGCAGCTCTGGAGTTTATTCATTGA 1059 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39304727427 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5