BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16530.1

Length=1056
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326097 jgi|Araly1|326097|fgenesh1_pm.C_scaffold_6001317          1664    0.0  


> Ahg326097 jgi|Araly1|326097|fgenesh1_pm.C_scaffold_6001317
Length=1059

 Score = 1664 bits (901),  Expect = 0.0
 Identities = 1008/1060 (95%), Gaps = 5/1060 (0%)
 Strand=Plus/Plus

Query  1     ATGATAAATTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTCTATGTAGCC  60
             ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1     ATGATAAGTTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTATATGTAGCC  60

Query  61    TTAATCTTAGGCTATGGCTCTGTGAAATGGTGGCACATCTTCACGCGTGATCAATGTGAT  120
             ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||
Sbjct  61    TTAATCTTAGGCTATGGTTCTGTGAAATGGTGGAACATCTTCACTCGTGATCAATGCGAT  120

Query  121   GCTATAAACCGTCTCGTTTGCTATTTCACCCTGCCGCTCTTCACCATTGAGTTCACGGCC  180
             ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct  121   GCTATAAACCGGCTCGTTTGCTATTTCACCCTTCCGCTCTTCACAATCGAGTTCACGGCC  180

Query  181   CATGTCGACCCGTTCAACATGAATTACCGGTTCATCGCGGCCGATGTCCTCTCTAAGGTC  240
             ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  181   CATGTCGACCCATTCAACATGAATTACCGGTTCATCGCTGCCGATGTCCTCTCTAAGGTC  240

Query  241   ATCATAGTCACGGTCTTAGCGTTGTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG  300
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241   ATCATAGTCACGGTCTTAGCGTTTTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG  300

Query  301   TCCATTACTAGTTTCTCTCTATGCACTCTTACTAACTCTCTTGTCGTTGGTGTGCCATTG  360
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  301   TCCATTACTAGTTTCTCTCTATGCACTCTTACCAACTCTCTGGTCGTTGGTGTGCCATTG  360

Query  361   GCTAAGGCAATGTACGGACAACAGGCTGTTGATCTGGTGGTTCAATCCTCGGTATTTCAA  420
             ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  361   GCTAAGGCAATGTACGGACAACAGGCTGTCGATCTCGTGGTTCAATCCTCGGTATTTCAA  420

Query  421   GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGTTTAGAAAAGCCGGATTTAGT  480
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  421   GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGCTTAGAAAAGCCGGATCTAGT  480

Query  481   AGTAATAATATCAGCGACGTACAA-GTAGACAACATCAATATCGAAAGTGGAAAAAGAGA  539
             |||||| ||| |||||||||| || ||||||| ||||||||||||||  |||||||||||
Sbjct  481   AGTAATTATAGCAGCGACGTA-AAGGTAGACAGCATCAATATCGAAAACGGAAAAAGAGA  539

Query  540   AACTGTGGTTGT-GG-GA-GAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA  596
             || ||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct  540   AATTGTGGTTGTGGGAGAGGAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA  599

Query  597   GCTTGCAACGAATCCAAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTTTTATTTC  656
             ||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct  600   GCTTGCAACAAATCCGAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTCTTATTTC  659

Query  657   TAACAGATGGCATCTGGAGCTGCCGGGCATATTAGAGGGTTCGATTCTTATAATGTCAAA  716
             ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  660   TAACAGATGGCATCTGGAGATGCCGGGCATATTAGAGGGATCGATTCTTATAATGTCAAA  719

Query  717   AGCAGGAACAGGAACGGCCATGTTCAATATGGGAATATTCATGGCACTTCAAGAAAAGTT  776
             ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  720   AGCAGGAACAGGAACCGCCATGTTCAATATGGGGATATTCATGGCACTTCAAGAGAAGTT  779

Query  777   GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTATTGAAGTTTATTGCCGGACC  836
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  780   GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTCTTGAAGTTTATTGCCGGACC  839

Query  837   GGCGGCCATGGCCATCGGCTCTATTGTCCTTGGCCTCCACGGTGATGTCCTCCGCGTAGC  896
              || |||||||||||||| ||||| | |||||||||||||||  ||||||||||||| ||
Sbjct  840   TGCCGCCATGGCCATCGGTTCTATCGCCCTTGGCCTCCACGGCAATGTCCTCCGCGTTGC  899

Query  897   CATCATTCAGGCTGCTTTGCCACAATCGATTACTTCGTTCATTTTTGCTAAGGAATATGG  956
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  900   CATCATTCAGGCTGCTTTGCCACAATCGATCACTTCGTTCATTTTTGCTAAGGAATATGG  959

Query  957   ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTTGGGATGTTGGTCTCTCTACCTGT  1016
             |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct  960   ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTCGGGATGTTGGTTTCTCTGCCTGT  1019

Query  1017  GCTCGTCGCCTACTACGCAGCTCTGGAGTTTATTCATTGA  1056
             ||||||||| ||||||||||||||||||||||||||||||
Sbjct  1020  GCTCGTCGCTTACTACGCAGCTCTGGAGTTTATTCATTGA  1059



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39304727427


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5