BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16530.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326097 jgi|Araly1|326097|fgenesh1_pm.C_scaffold_6001317 1664 0.0
> Ahg326097 jgi|Araly1|326097|fgenesh1_pm.C_scaffold_6001317
Length=1059
Score = 1664 bits (901), Expect = 0.0
Identities = 1008/1060 (95%), Gaps = 5/1060 (0%)
Strand=Plus/Plus
Query 1 ATGATAAATTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTCTATGTAGCC 60
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGATAAGTTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTATATGTAGCC 60
Query 61 TTAATCTTAGGCTATGGCTCTGTGAAATGGTGGCACATCTTCACGCGTGATCAATGTGAT 120
||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 61 TTAATCTTAGGCTATGGTTCTGTGAAATGGTGGAACATCTTCACTCGTGATCAATGCGAT 120
Query 121 GCTATAAACCGTCTCGTTTGCTATTTCACCCTGCCGCTCTTCACCATTGAGTTCACGGCC 180
||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 121 GCTATAAACCGGCTCGTTTGCTATTTCACCCTTCCGCTCTTCACAATCGAGTTCACGGCC 180
Query 181 CATGTCGACCCGTTCAACATGAATTACCGGTTCATCGCGGCCGATGTCCTCTCTAAGGTC 240
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CATGTCGACCCATTCAACATGAATTACCGGTTCATCGCTGCCGATGTCCTCTCTAAGGTC 240
Query 241 ATCATAGTCACGGTCTTAGCGTTGTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCATAGTCACGGTCTTAGCGTTTTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG 300
Query 301 TCCATTACTAGTTTCTCTCTATGCACTCTTACTAACTCTCTTGTCGTTGGTGTGCCATTG 360
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 301 TCCATTACTAGTTTCTCTCTATGCACTCTTACCAACTCTCTGGTCGTTGGTGTGCCATTG 360
Query 361 GCTAAGGCAATGTACGGACAACAGGCTGTTGATCTGGTGGTTCAATCCTCGGTATTTCAA 420
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 GCTAAGGCAATGTACGGACAACAGGCTGTCGATCTCGTGGTTCAATCCTCGGTATTTCAA 420
Query 421 GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGTTTAGAAAAGCCGGATTTAGT 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 421 GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGCTTAGAAAAGCCGGATCTAGT 480
Query 481 AGTAATAATATCAGCGACGTACAA-GTAGACAACATCAATATCGAAAGTGGAAAAAGAGA 539
|||||| ||| |||||||||| || ||||||| |||||||||||||| |||||||||||
Sbjct 481 AGTAATTATAGCAGCGACGTA-AAGGTAGACAGCATCAATATCGAAAACGGAAAAAGAGA 539
Query 540 AACTGTGGTTGT-GG-GA-GAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA 596
|| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AATTGTGGTTGTGGGAGAGGAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA 599
Query 597 GCTTGCAACGAATCCAAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTTTTATTTC 656
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 GCTTGCAACAAATCCGAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTCTTATTTC 659
Query 657 TAACAGATGGCATCTGGAGCTGCCGGGCATATTAGAGGGTTCGATTCTTATAATGTCAAA 716
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 TAACAGATGGCATCTGGAGATGCCGGGCATATTAGAGGGATCGATTCTTATAATGTCAAA 719
Query 717 AGCAGGAACAGGAACGGCCATGTTCAATATGGGAATATTCATGGCACTTCAAGAAAAGTT 776
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 720 AGCAGGAACAGGAACCGCCATGTTCAATATGGGGATATTCATGGCACTTCAAGAGAAGTT 779
Query 777 GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTATTGAAGTTTATTGCCGGACC 836
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTCTTGAAGTTTATTGCCGGACC 839
Query 837 GGCGGCCATGGCCATCGGCTCTATTGTCCTTGGCCTCCACGGTGATGTCCTCCGCGTAGC 896
|| |||||||||||||| ||||| | ||||||||||||||| ||||||||||||| ||
Sbjct 840 TGCCGCCATGGCCATCGGTTCTATCGCCCTTGGCCTCCACGGCAATGTCCTCCGCGTTGC 899
Query 897 CATCATTCAGGCTGCTTTGCCACAATCGATTACTTCGTTCATTTTTGCTAAGGAATATGG 956
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 CATCATTCAGGCTGCTTTGCCACAATCGATCACTTCGTTCATTTTTGCTAAGGAATATGG 959
Query 957 ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTTGGGATGTTGGTCTCTCTACCTGT 1016
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 960 ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTCGGGATGTTGGTTTCTCTGCCTGT 1019
Query 1017 GCTCGTCGCCTACTACGCAGCTCTGGAGTTTATTCATTGA 1056
||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 GCTCGTCGCTTACTACGCAGCTCTGGAGTTTATTCATTGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5