BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16540.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1 2104 0.0
Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1 416 2e-115
Ahg941150 jgi|Araly1|941150|scaffold_601694.1 211 1e-53
> Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1
Length=1490
Score = 2104 bits (1139), Expect = 0.0
Identities = 1374/1483 (93%), Gaps = 34/1483 (2%)
Strand=Plus/Plus
Query 34 tctctctgctttctctctctagacgtgatctctaattctctaatgtctTCCTGCATTGCC 93
||| ||||||||||||||||||||||| | |||||| |||||||||| ||||| |
Sbjct 23 TCT-TCTGCTTTCTCTCTCTAGACGTG-----T--TTCTCT-ATGTCTTCCTCCATTGTC 73
Query 94 ATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATG 153
||| ||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 74 ATTACCTCTAAACTCTCCACAATCGGAGGAAGACGATTCGTGGGAGGAAGAGAAACGATG 133
Query 154 GGACTTCCCATCGGAAAATCTCTTAGAGTGAG-AGAATTATGGTGTGTTCTTAATGCTTA 212
||| ||||| |||||||||||| ||||||||| |||||||||| ||| ||||||||||||
Sbjct 134 GGATTTCCCGTCGGAAAATCTC-TAGAGTGAGAAGAATTATGGCGTG-TCTTAATGCTTA 191
Query 213 ATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGA--TT--TT---GA-TT-C 263
||| |||| ||| |||||||||||| |||||||||||||||| || || || || |
Sbjct 192 ATACTCACGGACGCAGCCATTGTTCGTCATCATCTCCATGGATTTTGATTCCAGAGTTCC 251
Query 264 CATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAAT 323
|||||| ||||||||||||| ||||||| | |||||||||||| ||||||||||||||||
Sbjct 252 CATTTCACGGGAAAGCACTTCTCTTTCCACGTTGCTTAACCAAGATGCAATGTGGCAAAT 311
Query 324 GAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGA 383
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 312 GAACTTGGGATCAGATGATACAATGGGTCTTGATGGGTCTTATCCGGAACGTCACGGAGA 371
Query 384 GCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATT 443
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 372 GCCAGATTGTGCTTATTACATAAGGACTGGACTTTGTAGGTTTGGTTCTACTTGCCGATT 431
Query 444 CAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCC 503
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 432 CAATCATCCCCACGACCGGAAACTGGTTATAGCAACAGCAAGGATTAAAGGAGAATACCC 491
Query 504 TGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGG 563
|||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 492 TGAAAGAATTGGGCAGCCTGAATGTGAGTTTTATCTTAAAACAGGAACCTGCAAATTCGG 551
Query 564 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGT 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 552 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGGATTGATGGAAGTGTATCAGT 611
Query 624 TAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAAT 683
|||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 612 TAATGTCTTAGGCTATCCTCTACGTCCAAACGAAGATGATTGTTCTTACTTTTTGAGAAC 671
Query 684 TGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 743
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TGGGCACTGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 731
Query 744 CTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAAC---TGG 800
||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 732 CTTGATGGTTTCTCTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAACCTCCAACTGATGG 791
Query 801 TCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGA 860
||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 792 TCAACAGTCTTATTCTTGGCCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTGGCAAGA 851
Query 861 TCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGG 920
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 852 TCCTTCTAGTTTCTCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCAGG 911
Query 921 AAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACC 980
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 912 AAACTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCAGAAAGACC 971
Query 981 AGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1040
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1031
Query 1041 CAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGT 1100
||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1032 CAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCTGATTGTGTCTTAAGCTCTGT 1091
Query 1101 TGGCCTTCCTTTACGCCCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTG 1160
|||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1092 TGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTCTATTCGCGGTATGGGATCTG 1151
Query 1161 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1211
Query 1221 T-ACTGCATCTCCTTCTCCTTCATCATCT-CTGCATCAAGAGACTGCAATCACCACAGAG 1278
| | ||||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||
Sbjct 1212 TGA-TGCATCTCCTTCTCCTTCATCATCTTC-GCATCAAGAGACTGCCATCACCACACAG 1269
Query 1279 CTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACA 1338
|||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 1270 CTCAGGAATCTCATAGTCTCTTCTTCAGTGGAAGCAACACCCACAACACTCCCTGAAACA 1329
Query 1339 ACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACC-CTGTGTTTTGTCTAT 1397
|||||||||||||| ||||||||| ||||||| |||||||| || || |||||||||| |
Sbjct 1330 ACCTCTGCTAAAGAAACCATTGTTCATGCACAACACTGAAA-CCACTTTGTTTTGTCTGT 1388
Query 1398 CTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATG 1457
|||||| ||| || |||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 1389 CTTGAA-CAACATTTAACATTTGTTTTGTTTTATCTCGTAAACATTTATGTACAGAGATG 1447
Query 1458 ATATCTGA--T-CTAATCTGATTCGCCTTTTGTTGTAATTTTC 1497
| | | | | || ||||||||||||||||||||||||||||
Sbjct 1448 AGAAATTAACTTCTGATCTGATTCGCCTTTTGTTGTAATTTTC 1490
> Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1
Length=1649
Score = 416 bits (225), Expect = 2e-115
Identities = 396/478 (83%), Gaps = 13/478 (3%)
Strand=Plus/Plus
Query 281 CTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAATGAACTTGGGATCAGATG 340
||| |||||| || || | || ||| ||||||||||||||||||| ||| | |||||||
Sbjct 289 CTTCTCTTTCACCTTTAATGAATCAAGATGCAATGTGGCAAATGAATTTGAGTTCAGATG 348
Query 341 ATACAATGGGTGTTGA-TGGGTCTTATCCGGAACG-TCACGGAGAGCCAGATTGTGCTTA 398
| ||||| | | | ||| || || || ||||| || |||||||| |||||| ||||
Sbjct 349 AAACAAT--G-G-AAACTGGTTCCTACCCTGAACGACCA-GGAGAGCCTGATTGTTCTTA 403
Query 399 TTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGA 458
||| ||||| |||||||||||||| ||||| || ||||| || ||||||||||||| ||
Sbjct 404 TTACATAAGAACTGGACTTTGTAGATTTGGCTCTACTTGTCGGTTCAATCATCCTCGTGA 463
Query 459 CCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCCTGAAAGAATTGGTCA 518
||| ||||||||||||| ||||||||||| | |||||| ||||||||||| ||||||||
Sbjct 464 TCGGGAACTGGTTATAGCCACTGCAAGGATGAGAGGAGAGTACCCTGAAAGGATTGGTCA 523
Query 519 GCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGGAGTGACTTGCAAGTT 578
||||||||| |||| ||| |||||||||| |||||||| || ||||| || || |||||
Sbjct 524 GCCTGAATGCGAGTACTATTTGAAGACAGGAACCTGCAAGTTTGGAGTAACATGTAAGTT 583
Query 579 TCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTA 638
||||||||||||||||||||||||||||| |||||| || || | ||| | ||| ||||
Sbjct 584 TCATCATCCTAGGAACAAAGCTGGTATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTA 643
Query 639 TCCTCTACG-TCCGAACGAAGATGATTGCT-CTTACTTTT-TGAGAATTGGACAATGTAA 695
|||||| || || ||| |||| |||||| | |||| |||| | |||| ||||| |||||
Sbjct 644 TCCTCTCCGCTC-GAATGAAGTTGATTG-TGCTTA-TTTTCTAAGAACCGGACATTGTAA 700
Query 696 ATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGGTT 753
|||||| || |||||||||||||| ||||||||| ||||| |||||||| ||||||||
Sbjct 701 ATTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGGTT 758
Score = 329 bits (178), Expect = 3e-89
Identities = 273/319 (86%), Gaps = 6/319 (2%)
Strand=Plus/Plus
Query 906 CGGGTTTC-ATTCGGGAAATTCTGTTCCGCT---CGGGT-TCTATGCATTACCTAGAGAG 960
|||||||| || ||||| ||||||||| | |||| | |||||||| || || ||
Sbjct 1006 CGGGTTTCAATCCGGGATCCTCTGTTCCGATAGGAGGGTAT-TATGCATTGCCGAGGGAA 1064
Query 961 AATGTATTCCCGGAAAGACCAGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGAT 1020
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 1065 AATGTGTTCCCGGAAAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGTGAC 1124
Query 1021 TGCAAATTTGGAACAGTCTGCAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCT 1080
||||||||||| ||||| ||||| ||||| |||||||||||||| ||| | |||||||||
Sbjct 1125 TGCAAATTTGGCACAGTTTGCAAGTTTCACCATCCTAGAGACAGACAAGCTCCTCCTCCT 1184
Query 1081 GATTGTGTCTTAAGCTCGGTTGGCCTTCCTTTACGCCCGGGAGAACCACTGTGCGTGTTC 1140
|||||| |||||||||| ||||||| |||||||||||||||||||| |||| ||||||
Sbjct 1185 GATTGTCTCTTAAGCTCCATTGGCCTCCCTTTACGCCCGGGAGAACCGTTGTGTGTGTTC 1244
Query 1141 TATTCTCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGA 1200
||| |||| ||||| |||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 1245 TATACTCGATATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATGAGA 1304
Query 1201 GTCTTCACTTACAACAACA 1219
|| ||| | ||| | ||||
Sbjct 1305 GTATTCGCATACGAGAACA 1323
> Ahg941150 jgi|Araly1|941150|scaffold_601694.1
Length=190
Score = 211 bits (114), Expect = 1e-53
Identities = 153/171 (89%), Gaps = 5/171 (3%)
Strand=Plus/Minus
Query 1200 AGTCTTCACTTACAACAACAAT-ACTGCATCTCCTTCTCCTTCATCATCTCTGCATCAAG 1258
|||||||||||||||||||||| | |||| || || || ||||||||||||| || ||||
Sbjct 179 AGTCTTCACTTACAACAACAATGA-TGCACCTTCTCCTTCTTCATCATCTCTACAACAAG 121
Query 1259 AGACTGCAATCACCACAGAGCTCAGGAATCTCCTAGTCT-CTTCTTCTGTGGAAGCAAAA 1317
||||||| ||||||||| ||||||||||||||||||||| ||| ||| || ||||||| |
Sbjct 120 AGACTGCCATCACCACACAGCTCAGGAATCTCCTAGTCTCCTTTTTC-GTAGAAGCAACA 62
Query 1318 CCCACATCACTCCCTGAAACAACCTCTGCTAAAGACACCATTGTTGATGCA 1368
|||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 61 CCCACAACACTCGCTGAAACAACCTCTGCTAAAGACACCATTGTT-ATGCA 12
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5