BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16550.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488513 jgi|Araly1|488513|fgenesh2_kg.6__1647__AT5G16550.1 1526 0.0
Ahg359290 jgi|Araly1|359290|fgenesh1_pg.C_scaffold_92000004 566 2e-160
Ahg905222 jgi|Araly1|905222|Al_scaffold_0003_2350 527 7e-149
Ahg939867 jgi|Araly1|939867|scaffold_600411.1 261 8e-69
> Ahg488513 jgi|Araly1|488513|fgenesh2_kg.6__1647__AT5G16550.1
Length=1131
Score = 1526 bits (826), Expect = 0.0
Identities = 1002/1082 (93%), Gaps = 31/1082 (3%)
Strand=Plus/Plus
Query 98 TCTCAACTTTTGTTCCTTACTCTTATTACTTCCTAAATCCGATCGAAACAACTGTTGGGT 157
|||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 71 TCTCAAGTTTTATTCCTTACTCTTATTACTTCCTAAATCCGATCGAAACAACTGGTGGGT 130
Query 158 TAGTTTCTAATTTCCAAGAATGGCGCAAGATCACGACGAGACGGAGAATAAAACCTTTGC 217
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 131 TAGTTTCTAATTTCCAAGAATGACGCAAGATCACGACGAGACGGAGAATAAAACCTACGC 190
Query 218 CGACGTTGTCGGTGGCGATGATGTCGGCGAAATTGTCAACGGAGGAACAAAGAATGGCTA 277
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 191 CGACGTTGTCGGTGGCGATGATGTCGGCGAAATTGTCAACGGAGGAACGAAGAATGGTTA 250
Query 278 TCGTAAACCGGACTCTGTGGAGAAGGAAGATGATGAGGATTTGAAGAGTCTCTATTCCTT 337
|||||||||||||||||| | | | |||| |||||||||||||||||||||||||||||
Sbjct 251 TCGTAAACCGGACTCTGT-G-G-A-GAAG--GATGAGGATTTGAAGAGTCTCTATTCCTT 304
Query 338 GATTTGTCTCACGATCGGTTCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTC 394
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 305 GATTTGTCTCACGATCGGTTCGATTCTGTTCCCAGATTCGAAAACCGGTGATGCGTCGTC 364
Query 395 TTCGTTTCTTGAACGTGTAAGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGC 454
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 365 TTCGTTTCTTGAACGTGTTAGAAACTCCGTCGCCGAAAATGGGCCCAAGCTTCGAGAAGC 424
Query 455 TTCTGAAAGAACAGGACGCGAGATTCTTCTCTGGACTCGTAGAGGCAGCT-CGCTTCGTG 513
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 425 TTCTGAAAGAACAGGACGCGAGATTCTTCTCTGGACTCGTAGAGGCAGCTAC-CTTCGTG 483
Query 514 CTCTGCTTGTCATCACTATGGGAACAATAGTTCTT-TTGACAACAATGGCTTTGGTTGTA 572
|||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 484 CTCTGCTTGTAATCACTATGGGAACAATAGTTCTTCTT-ACAACAATGGCTTTGGTTGTA 542
Query 573 TTCACACTCTTCTTTGTAGCTGCAACAGCCAATGCTATCATAATCTCTCTTCTGATTTCA 632
||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||
Sbjct 543 TTCACACTCTTCTTTGTAGCTGCAACAGCTAATGCTATCATCATTTCTCTTATGATTTCA 602
Query 633 CTTGCTGTTGCTGGTGGCTTCTTGGCACTCTTCTTTCTCTGCTTGACTGGTGTTTACATT 692
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 603 CTTGCTGTTGCTGGTGGCTTCTTGGCGCTCTTCTTTCTTTGCTTGACTGGTGTTTACATT 662
Query 693 GGAGCCTTATCCGTTGCTGCATTCGTCATCTCTACCGCTACAGTTTCTGCTGTCGTTTCT 752
||||||||||| ||||||||||| |||||||||||||||||| ||||||| || ||||||
Sbjct 663 GGAGCCTTATCTGTTGCTGCATTTGTCATCTCTACCGCTACAATTTCTGCCGTTGTTTCT 722
Query 753 GTCTTAATAGCTTCAGGTTGGATTGGGTTTTTCTATGCGGTGTGGTTGGGAACAAGAGGA 812
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 723 GTCTTAATAGCTTCAGGTTGGATTGGGTTCTTCTATGTTGTGTGGTTGGGAACAAGAGGA 782
Query 813 AGCCTACGCTTGGCTAAGCAATCGGTTTCAGTGGTGGGATCAGCCATTTCAGGTAACACT 872
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AGCCTACGCTTGGCGAAACAATCGGTTTCAGTGGTGGGATCAGCCATTTCAGGTAACACT 842
Query 873 ATCAGTCGTCATCAACACCAAGACCGGGAGGTAAACATCGAATCAACCAACTGAGAATCC 932
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 843 TTCAGTCGTCATCAACCCCAAGACCGGGAGGTAAACATCGAATCATCCAACTGAGAATCC 902
Query 933 GTC-CTTACCGCGTTTGTAAATAAACCCCGACTTTTGGTTGTTAATGGAAGCTTGATATA 991
|| || |||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 903 ATCTCT-ACCGAGTTTGTAGATAAAACCCGAGTTTTGGTTGTTAATGGAAGCTTGATATA 961
Query 992 -A-ATAT--GATCTATGGAGTTTGTTGTGAAGAAGCAGAGAAAGAATGATAAGAATATTT 1047
| |||| |||||| ||| |||||||||||||||||||||| || | | | |||| |||
Sbjct 962 TATATATATGATCTAAGGATTTTGTTGTGAAGAAGCAGAGAACGA-T-A-A-GAATCTTT 1017
Query 1048 CAAAATGCAACTTGAAACATTTTGTGATCAATGTCTACGGATTTTTGGATCTATGTATGC 1107
||||||||| |||||||||||| |||||||| |||| ||| ||||||||| | |||||||
Sbjct 1018 CAAAATGCATCTTGAAACATTTGGTGATCAAAGTCTGCGGGTTTTTGGATTTGTGTATGC 1077
Query 1108 ATACATTGTGTGTTTTATGTACTTAAGAAAGAATAATGATCAGTATCCATATGAAATCTC 1167
||||||| ||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 1078 ATACATT-TGTGTTTTATGTACTTAAGAA----T---GATCAGTATACATATGAAATCTC 1129
Query 1168 AA 1169
||
Sbjct 1130 AA 1131
Score = 108 bits (58), Expect = 1e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 1 AAAGCCACGTCGGTGCTACACATGTCCCTGATTTCTCCTTTAACATAAAACTAAACAGCT 60
|||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||
Sbjct 1 AAAGCCACGTCGGTGCTACACATGTCCCCGATTTCTCCTTCAACA-AAAGCTAAACAGCT 59
Query 61 GTTTTGTCCGC 71
|||||||||||
Sbjct 60 GTTTTGTCCGC 70
> Ahg359290 jgi|Araly1|359290|fgenesh1_pg.C_scaffold_92000004
Length=570
Score = 566 bits (306), Expect = 2e-160
Identities = 351/372 (94%), Gaps = 5/372 (1%)
Strand=Plus/Plus
Query 354 GGTTCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTCTTCGTTTCTTGAACGT 410
||||||||| |||| ||| |||||||||| |||||| | ||||||||||||||||||||
Sbjct 193 GGTTCGATTTTGTTCCCAAATTCGAAAACTGGTGATGCGTCGTCTTCGTTTCTTGAACGT 252
Query 411 GTAAGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGA 470
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTAAGAAACTCCGTCGCCGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGA 312
Query 471 CGCGAGATTCTTCTCTGGACTCGTAGAGGCAGCTCGCTTCGTGCTCTGCTTGTCATCACT 530
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 313 CGCGAGATTCTTCTATGGACTCGTAGAAGCAGCTCGCTTCGTGCTCTGCTTGTCATCACT 372
Query 531 ATGGGAACAATAGTTCTT-TTGACAACAATGGCTTTGGTTGTATTCACACTCTTCTTTGT 589
|||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 373 ATGGGAACAATATTTCTTCTT-ACAACAATGGCTTTGGTTGTCTTCACACTCTTCTTTGT 431
Query 590 AGCTGCAACAGCCAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGTGG 649
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 432 AGCTGCAACAGCTAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGAGG 491
Query 650 CTTCTTGGCACTCTTCTTTCTCTGCTTGACTGGTGTTTACATTGGAGCCTTATCCGTTGC 709
|||||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 492 CTTCTTGGCATTCTTCTTTCTTTGCTTGACTGGTACTTACATTGGAGCCTTATCGGTTGC 551
Query 710 TGCATTCGTCAT 721
||||||||||||
Sbjct 552 TGCATTCGTCAT 563
> Ahg905222 jgi|Araly1|905222|Al_scaffold_0003_2350
Length=498
Score = 527 bits (285), Expect = 7e-149
Identities = 330/351 (94%), Gaps = 5/351 (1%)
Strand=Plus/Plus
Query 357 TCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTCTTCGTTTCTTGAACGTGTA 413
|||||| |||| ||| |||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1 TCGATTTTGTTCCCAAATTCGAAAACTAGTGATGCGTCGTCTTCGTTTCTTGAACGTGTA 60
Query 414 AGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGACGC 473
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAACTCCGTCGCCGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGACGC 120
Query 474 GAGATTCTTCTCTGGACTCGTAGAGGCAGCTCGCTTCGTGCTCTGCTTGTCATCACTATG 533
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GAGATTCTTCTATGGACTCGTAGAAGCAGCTCGCTTCGTGCTCTGCTTGTCATCACTATG 180
Query 534 GGAACAATAGTTCTT-TTGACAACAATGGCTTTGGTTGTATTCACACTCTTCTTTGTAGC 592
||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GGAACAATATTTCTTCTT-ACAACAATGGCTTTGGTTGTCTTCACACTCTTCTTTGTAGC 239
Query 593 TGCAACAGCCAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGTGGCTT 652
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TGCAACAGCTAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGAGGCTT 299
Query 653 CTTGGCACTCTTCTTTCTCTGCTTGACTGGTGTTTACATTGGAGCCTTATC 703
||||||| |||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 300 CTTGGCATTCTTCTTTCTTTGCTTGACTGGTATTTACATCGGAGCCTTATC 350
> Ahg939867 jgi|Araly1|939867|scaffold_600411.1
Length=1795
Score = 261 bits (141), Expect = 8e-69
Identities = 167/179 (93%), Gaps = 3/179 (2%)
Strand=Plus/Plus
Query 355 GTTCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTCTTCGTTTCTTGAACGTG 411
|||||||| |||| ||| |||||||||| ||||| | ||||||||||||||||| |||
Sbjct 1426 GTTCGATTTTGTTCCCAAATTCGAAAACTAGTGATGCGTCGTCTTCGTTTCTTGAATGTG 1485
Query 412 TAAGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGAC 471
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TAAGAAACTCCGTCGCCGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGAC 1545
Query 472 GCGAGATTCTTCTCTGGACTCGTAGAGGCAGCTCGCTTCGTGCTCTGCTTGTCATCACT 530
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1546 GCGAGATTCTTCTATGGACTCGTAGAAGCAGCTCGCTTCGTGCTCTGCTTGTCATCACT 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5