BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16560.1
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893569 jgi|Araly1|893569|Al_scaffold_0006_1565 1066 0.0
> Ahg893569 jgi|Araly1|893569|Al_scaffold_0006_1565
Length=1260
Score = 1066 bits (577), Expect = 0.0
Identities = 703/759 (93%), Gaps = 27/759 (4%)
Strand=Plus/Plus
Query 333 ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCT 392
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTCCATGGAAGGAGTTTTTCTAGAGAAAACCAAAACAAACACAACTACTACTCTCCCT 60
Query 393 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATACCATCACAATGAATCTTCT 452
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 61 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATATCATCACAACGAATCTTCC 120
Query 453 AAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAA 512
|||||||||||||||||||| ||||||| |||| ||||||||||||| || | |||||||
Sbjct 121 AAAGAATCTTCAAGAAGATCGTCCCAACCCGAACACAACAACCGATCATCGAGCTTTGAA 180
Query 513 CTCTCTTTATCTCATCATAACCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGA 572
|||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 181 CTCTCTCTATCTCATCATAACCACCCAACCGCAAGAATCTTCCATTGTCCTGATCGAAGA 240
Query 573 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGT----G---T 625
|||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 241 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATTAATGGTGGAAGTCTT 300
Query 626 --TCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 360
Query 684 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAA--------C-TCTTCATTA 734
||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 361 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTCCTTCTTCTTCTTTG 420
Query 735 CCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAC 794
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTCTCTTGGAGGAGGAGACTTGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAT 480
Query 795 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTTAAAGGTGTTCCTTTGcatcat 854
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTCAAAGGTGTTCCTTTGCATCAT 540
Query 855 catcatcatcatAATCAGTATGG---AGTCGTTGGATCTTCAGATTCGTCTTCT-C-C-T 908
||||||||||||||||| ||||| ||| |||||||||||||||||||||||| | | |
Sbjct 541 CATCATCATCATAATCACTATGGATCAGTAGTTGGATCTTCAGATTCGTCTTCTCCTCAT 600
Query 909 CAT--C-ACCATAACCATCATCATCATGGGATGATCAGATCAAGATTCTTGCCTAAGATG 965
||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATCACAACCATCATCATCATCATCATGGGATGATCAGATCAAGATTCTTGCCTAAGATG 660
Query 966 CCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGG 1025
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 CCGACAAAACGGAGCATGAGAGCTCCAAGGATGCGTTGGACAAGTAGCCTCCACGCGCGG 720
Query 1026 TTTGTTCACGCTGTTGAGCTTCTAGGCGGCCATGAAAGA 1064
||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TTTGTTCACGCTGTTGAGCTTCTAGGCGGTCATGAAAGA 759
Score = 686 bits (371), Expect = 0.0
Identities = 398/410 (97%), Gaps = 5/410 (1%)
Strand=Plus/Plus
Query 1139 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGA 1198
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 852 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCTGATGGGTCAGGCGA 911
Query 1199 AGAAGAAATGGGCATAAATGGAAACGAAG-T--TCATCATCAATCATCGACGGATCAAAG 1255
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 912 AGAAGAAATGGGCATAAATGGAAACGAAGTTCATCATCATCAATCATCGACGGATCAAAG 971
Query 1256 GGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCG 1315
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 972 GGCACAATCTGATGATACTTCTCTTCATCAAGAAATTGACATTTCTTCCACACAACCTCG 1031
Query 1316 TTGGAGTAACTCTTCACGAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGA 1375
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1032 TTGGAGTAACTCTTCACGAGAGACATGGCCATCAAGTAATAACTGCTCAAGCGACATAGA 1091
Query 1376 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCATTCA 1435
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1092 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCACTATCAAAGATCCAGCCTTCA 1151
Query 1436 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAA-A 1494
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1152 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAGATCTTAGTTGT-AACA 1210
Query 1495 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1544
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5