BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16560.1 Length=2046 Score E Sequences producing significant alignments: (Bits) Value Ahg893569 jgi|Araly1|893569|Al_scaffold_0006_1565 1066 0.0 > Ahg893569 jgi|Araly1|893569|Al_scaffold_0006_1565 Length=1260 Score = 1066 bits (577), Expect = 0.0 Identities = 703/759 (93%), Gaps = 27/759 (4%) Strand=Plus/Plus Query 333 ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCT 392 ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGTCCATGGAAGGAGTTTTTCTAGAGAAAACCAAAACAAACACAACTACTACTCTCCCT 60 Query 393 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATACCATCACAATGAATCTTCT 452 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 61 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATATCATCACAACGAATCTTCC 120 Query 453 AAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAA 512 |||||||||||||||||||| ||||||| |||| ||||||||||||| || | ||||||| Sbjct 121 AAAGAATCTTCAAGAAGATCGTCCCAACCCGAACACAACAACCGATCATCGAGCTTTGAA 180 Query 513 CTCTCTTTATCTCATCATAACCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGA 572 |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 181 CTCTCTCTATCTCATCATAACCACCCAACCGCAAGAATCTTCCATTGTCCTGATCGAAGA 240 Query 573 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGT----G---T 625 |||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 241 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATTAATGGTGGAAGTCTT 300 Query 626 --TCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CATCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 360 Query 684 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAA--------C-TCTTCATTA 734 ||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 361 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTCCTTCTTCTTCTTTG 420 Query 735 CCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAC 794 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 CCTTCTCTTGGAGGAGGAGACTTGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAT 480 Query 795 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTTAAAGGTGTTCCTTTGcatcat 854 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTCAAAGGTGTTCCTTTGCATCAT 540 Query 855 catcatcatcatAATCAGTATGG---AGTCGTTGGATCTTCAGATTCGTCTTCT-C-C-T 908 ||||||||||||||||| ||||| ||| |||||||||||||||||||||||| | | | Sbjct 541 CATCATCATCATAATCACTATGGATCAGTAGTTGGATCTTCAGATTCGTCTTCTCCTCAT 600 Query 909 CAT--C-ACCATAACCATCATCATCATGGGATGATCAGATCAAGATTCTTGCCTAAGATG 965 ||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CATCACAACCATCATCATCATCATCATGGGATGATCAGATCAAGATTCTTGCCTAAGATG 660 Query 966 CCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGG 1025 |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 661 CCGACAAAACGGAGCATGAGAGCTCCAAGGATGCGTTGGACAAGTAGCCTCCACGCGCGG 720 Query 1026 TTTGTTCACGCTGTTGAGCTTCTAGGCGGCCATGAAAGA 1064 ||||||||||||||||||||||||||||| ||||||||| Sbjct 721 TTTGTTCACGCTGTTGAGCTTCTAGGCGGTCATGAAAGA 759 Score = 686 bits (371), Expect = 0.0 Identities = 398/410 (97%), Gaps = 5/410 (1%) Strand=Plus/Plus Query 1139 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGA 1198 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 852 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCTGATGGGTCAGGCGA 911 Query 1199 AGAAGAAATGGGCATAAATGGAAACGAAG-T--TCATCATCAATCATCGACGGATCAAAG 1255 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 912 AGAAGAAATGGGCATAAATGGAAACGAAGTTCATCATCATCAATCATCGACGGATCAAAG 971 Query 1256 GGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCG 1315 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 972 GGCACAATCTGATGATACTTCTCTTCATCAAGAAATTGACATTTCTTCCACACAACCTCG 1031 Query 1316 TTGGAGTAACTCTTCACGAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGA 1375 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1032 TTGGAGTAACTCTTCACGAGAGACATGGCCATCAAGTAATAACTGCTCAAGCGACATAGA 1091 Query 1376 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCATTCA 1435 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1092 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCACTATCAAAGATCCAGCCTTCA 1151 Query 1436 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAA-A 1494 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | Sbjct 1152 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAGATCTTAGTTGT-AACA 1210 Query 1495 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1544 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1211 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76942294900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5