BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16567.1

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941153 jgi|Araly1|941153|scaffold_601697.1                        337    2e-92


> Ahg941153 jgi|Araly1|941153|scaffold_601697.1
Length=286

 Score =  337 bits (182),  Expect = 2e-92
 Identities = 192/196 (98%), Gaps = 3/196 (2%)
 Strand=Plus/Plus

Query  1    ATGGGGCCTAAGGAATTGGCAAATTGTACCATGGGTTGGTTCAAATGCAATGGACAAGAC  60
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGGGGCCTCAGGAATTGGCAAATTGTACCATGGGTTGGTTCAAATGCAATGGACAAGAC  80

Query  61   CGAAGATTGGGGAAGAATGAGATGTGGCATGAAGGTGTTGTAGTTGTCTCATTAACCAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   CGAAGATTGGGGAAGAATGAGATGTGGCATGAAGGTGTTGTAGTTGTCTCATTAACCAAC  140

Query  121  AACAGTCATAGAGAGAGAGATGTGATGTACATTGTTCATAAGGGGGTCCATAT-TGTTAT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  141  AACAGTCATAGAGAGAGAGATGTGATGTACATTGTTCATAAGGGGGTCCATATCT-TTAT  199

Query  180  ATTTAAAATTTGTTGA  195
            ||| ||||||||||||
Sbjct  200  ATT-AAAATTTGTTGA  214



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6568380892


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5