BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16570.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1 2001 0.0
Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1 664 0.0
Ahg923181 jgi|Araly1|923181|scaffold_104462.1 617 5e-176
> Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1
Length=1229
Score = 2001 bits (1083), Expect = 0.0
Identities = 1185/1234 (96%), Gaps = 8/1234 (1%)
Strand=Plus/Plus
Query 7 aaaaaaaaGGTTTATTATTCTTTGAGATTCCTA-AGATATGTCTTCACTTGCAGATTTAA 65
|||||||| || ||||||||||| ||||||||| | | ||||||||||||||||||||||
Sbjct 1 AAAAAAAACGTCTATTATTCTTTCAGATTCCTACA-AAATGTCTTCACTTGCAGATTTAA 59
Query 66 TCAATCTCGATCTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTG 125
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTAATCTAGATCTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTG 119
Query 126 GATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGCCTGGACCAGTGACGGATCCAT 185
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 GATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGCCAGGACCAGTGACGGATCCAT 179
Query 186 CGCAGTTACCGAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCGGGCGATGACA 245
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 180 CGGAGTTACCGAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCCGGTGATGACA 239
Query 246 GTGAAGTCATCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGAAGTCATCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACA 299
Query 306 TCCTTGTGATGTGTGACGCATATACACCGGCAGGAGAGCCGATTCCGACGAACAAAAGGC 365
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 300 TCCTTGTGATGTGTGACGCATATACACCTGCCGGAGAGCCGATTCCGACGAACAAAAGGC 359
Query 366 ATGCGGCGGCTAAGATCTTTGA-AGACCCTAGTGTTGTCGCCGAAGAAACATGGTACGGA 424
||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 360 ATGCGGCCGCTAAGATCTTT-AGCGACCCTAGTGTTGTTGCCGAAGAAACATGGTACGGA 418
Query 425 ATTGAACAAGAGTATACCTTGTTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTC 484
||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATTGAGCAAGAGTACACTTTGCTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTC 478
Query 485 GGCGGTTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGCGGTTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTT 538
Query 545 GGAAGAGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCAATGTCAGT 604
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 GGAAGAGACATCGTAGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCGATGTCAGT 598
Query 605 GGGACTAACGGCGAAGTTATGCCTGGCCAGTGGGAGTTCCAAGTCGGTCCCACCGTTGGA 664
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 599 GGAACTAACGGCGAAGTGATGCCCGGCCAGTGGGAGTTCCAAGTTGGTCCCACCGTTGGA 658
Query 665 ATCGCTGCCGCCGATCAGGTCTGGGTTGCTCGTTACATTCTTGAGAGGATCACAGAATTG 724
||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 659 ATCGCTGCCGCAGATCAGGTCTGGGTCGCTCGTTACATCCTTCAGAGGATCACAGAATTG 718
Query 725 GCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGG 784
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCTGGAGTTGTTCTGTCTCTTGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGG 778
Query 785 GCACACACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTGATAAAG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 GCACACACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTCATAAAG 838
Query 845 AAAGCAATAGAGAAGCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 904
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAAGCGATAGAGAAGCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 898
Query 905 AACGAGCGTCGTCTCACCGGAAAACATGAAACCGCCGATATCAACACTTTCTTATGGGGT 964
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 899 AATGAGCGTCGTCTCACAGGAAAACATGAGACCGCCGATATCAACACTTTCTTATGGGGT 958
Query 965 GTGGCAAACCGTGGGGCATCGATTAGGGTTGGGCGTGACACTGAGCAGGCTGGAAAAGGA 1024
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 GTGGCAAACCGAGGGGCATCGATTAGGGTTGGGCGTGACACTGAGAAGGCTGGAAAAGGA 1018
Query 1025 TACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGTGACCTCCATGATT 1084
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 TACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGTAACCTCCATGATT 1078
Query 1085 GCTGAATCCACAATCCTTTGGAAACCATGAAAGAAGAAACCTTGAGCCTCAAGGAATCTC 1144
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1079 GCTGAATCCACAATCCTTTGGAAACCATGAAAGAAGAAACCTTGAGCTTCAAGGAATCTC 1138
Query 1145 TATAATATCAGTTCATGTTCATTCTTCTATGGTCTCTTTCTCATTCTGAAACAGTTCTCA 1204
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1139 TA-A-TATCAGTTCATGTTCATTCATCTATGGTCTCTTTCTCATTCTGAAACAGTTCTCA 1196
Query 1205 TGTGTTCTTTGTTTATTA-TGTTTGATTTGAAGT 1237
|||||||||||||| | | |||||||||||||||
Sbjct 1197 TGTGTTCTTTGTTT-TAAATGTTTGATTTGAAGT 1229
> Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1
Length=1270
Score = 664 bits (359), Expect = 0.0
Identities = 828/1050 (79%), Gaps = 50/1050 (5%)
Strand=Plus/Plus
Query 77 CTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTG 136
|||||||| |||| || | ||||||||||| ||||||||||| |||||||| || ||
Sbjct 115 CTCTCCGACGCCACCGAAAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAATG 174
Query 137 GATATGAGAAGCAAAGCAAGGACTTTGCCTGGACCAGTGACGGATCCATCGCAG-TTACC 195
|| || ||||||||||| ||||| | || |||||||| || |||||||| || || ||
Sbjct 175 GACATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTCACTGATCCATCAAAGCTT-CC 233
Query 196 GAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCT-CCGGGCGATGACAGTGAAGTCA 254
||||||||||||||||| || |||||||| || ||| || || || |||||||||||||
Sbjct 234 CAAATGGAACTACGACGGATCCAGCACCGGTCAGGCTGCC-GGAGAAGACAGTGAAGTCA 292
Query 255 -TCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCA-GAAGAGGCAACAACATCCTTGT 312
|| | |||||||| || || ||||| || || |||| ||| ||||||||||||||| ||
Sbjct 293 TTC-TATACCCTCAGGCGATATTCAAGGATCCATTCAGGAA-AGGCAACAACATCCTGGT 350
Query 313 GATGTGTGACGCATATACACCGGCAGGAGAGCCGATTCCGACGAACAAAAGGCA-TGCGG 371
||||||||| || || ||||| || || || || ||||| || ||||| ||||| | |
Sbjct 351 GATGTGTGATGCTTACACACCAGCTGGTGATCCAATTCCAACCAACAAGAGGCACAAC-G 409
Query 372 CGGCTAAGATCTTTGAAG--ACCCTAGTGTTGTCGCCGAAGAAACATGGTACGGAATTGA 429
| ||||||||| || || |||| | |||| | | || || | ||||| ||||||||
Sbjct 410 CTGCTAAGATC-TT-CAGCCACCCCAACGTTGCCTCTGAGGAGCCTTGGTATGGAATTGA 467
Query 430 ACAAGAGTATACCTTGTTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG 489
||||| || || ||| |||||||||| | || ||||| | |||||||| || || ||
Sbjct 468 GCAAGAATACACTTTGATGCAAAAGGACGTGAACTGGCCAATTGGTTGGCCTGTTGGTGG 527
Query 490 TTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAG 549
|||||| || ||||||||||| ||||||||||| || ||||| ||||||||| |||| |
Sbjct 528 TTTCCCTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCG 587
Query 550 AGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGG-AAT--CAATGTCAGTGG 606
||||| || ||| | || |||||||| ||| |||||||||| | | | || || |||
Sbjct 588 TGACATTGTGGATGCACACTACAAAGCCTGTATTTACGCCGGTATTGGC-ATTTC--TGG 644
Query 607 -GACTAACGGCGAAGTTATGCCTGGCCAGTGGGAGTTCCAAGTCGGTCCCACCGTTG-GA 664
| | || || ||||| ||||||||||||||||||||||||||||| ||| |||| |
Sbjct 645 TGTC-AATGGAGAAGTCATGCCTGGCCAGTGGGAGTTCCAAGTCGG-CCCT--GTTGAGG 700
Query 665 --ATCGCTGCCGCCGATCAGGTCTGGGTTGCTCGTTACATTCTTGAGAGGATCACAGA-A 721
|| | ||| | ||||| |||||||||||||| ||| |||| ||||||||||| || |
Sbjct 701 GTATTGGTGCTGGTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGA 760
Query 722 T-TGGCTGGAGT---TGTTCTGTCTCTAGACCCTAAACCAATTCCGGGAGATTGGAATGG 777
| | |||| || ||| | | || | ||||| |||||| | ||||| |||||||| ||
Sbjct 761 TCT--CTGGTGTAAATGT-CAG-CT-TCGACCCAAAACCAGTCCCGGGTGATTGGAACGG 815
Query 778 TGCAGGGGCACACA-CAAATTACAGTACGAAGTCGATGAGAGAA-GATGGAGGGT-ACGA 834
|| || || ||| ||| | ||||||| ||| | ||||| ||| |||||||| | | ||
Sbjct 816 AGCTGGAGCTCACTGCAACT-ACAGTACTAAGACAATGAG-GAACGATGGAGGATTA-GA 872
Query 835 GGTGATAAAGAAAGCAATAGAGAAGCTTG-GATTGCGTCACAAGGAACACATTGCTGCTT 893
||||| |||||||| |||| ||||||| | | | ||||| ||||||||||||||||
Sbjct 873 AGTGATCAAGAAAGCGATAGGGAAGCTTCAGCT-GAAACACAAAGAACACATTGCTGCTT 931
Query 894 ATGGTGAAGGCAACGAGCGTCGTCTCACCGGAAAACATGAAACCGCCGATATCAACACTT 953
| |||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||
Sbjct 932 ACGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACGAAACCGCAGACATCAACACTT 991
Query 954 TCT-TATGGGGTGTGGCAAACCGTGGGGCATC-GATTAGGGTTGGGCGTGACACTGAGCA 1011
||| | ||||| || ||||||||||| ||||| | |||| |||| |||||||||||| |
Sbjct 992 TCTCT-TGGGGAGTCGCAAACCGTGGAGCATCCG-TTAGAATTGGACGTGACACTGAGAA 1049
Query 1012 GGCTGGAAAAGGATACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGT 1071
| || ||||| ||||| || || || ||||||||||| |||||||||||||| |||
Sbjct 1050 AGAAGGTAAAGGTTACTTCGAGGACCGAAGGCCAGCTTCTAACATGGATCCTTATGTTGT 1109
Query 1072 GACCTCCATGATTGCTGAATCCACAATCCT 1101
|| |||||||| |||||| |||| |||||
Sbjct 1110 CACTTCCATGATCGCTGAAACCACCATCCT 1139
> Ahg923181 jgi|Araly1|923181|scaffold_104462.1
Length=1109
Score = 617 bits (334), Expect = 5e-176
Identities = 840/1080 (78%), Gaps = 51/1080 (5%)
Strand=Plus/Plus
Query 46 GTCTTCACT-TGCAGATTTAATCAATCTCGATCTCTCCGATTCCACTGACCAGATCATCG 104
|||| |||| | ||||| | | || ||||||||||| ||| ||| || | |||||||
Sbjct 31 GTCTCCACTCT-CAGATCTCCTAAACCTCGATCTCTCAGATACCA-AGA--AAATCATCG 86
Query 105 CCGAGTACATATGGATTGGTGGATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGC 164
| || ||||||||||||||||| || || ||||||| ||||||||||| ||||| || |
Sbjct 87 CTGAATACATATGGATTGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGGACATTAC 146
Query 165 CTGGACCAGTGACG-GATCCATCGCAG-TTACCGAAATGGAACTACGACGGTTCAAGCAC 222
| |||||||| | | |||||| | || || || |||||||||||||| || || |||||
Sbjct 147 CAGGACCAGT-AAGTGATCCAACAAAGCTT-CCAAAATGGAACTACGATGGATCTAGCAC 204
Query 223 CGGCCAAGCTC-CGGGCGATGACAGTGAAGTCA-TCATCTACCCTCAAGCTATCTTCAAA 280
|| ||||| | | || |||||||||||||||| || | || ||||| || || |||||
Sbjct 205 CGATCAAGC-CGCTGGAGATGACAGTGAAGTCATTC-TTTATCCTCAGGCAATATTCAAG 262
Query 281 GACCCCTTCA-GAAGAGGCAACAACATCCTTGTGATGTGTGACGCATATACACCGGCAGG 339
||||| |||| |||| || |||||||| || ||||||||||| || || |||||||| ||
Sbjct 263 GACCCATTCAGGAAG-GGGAACAACATTCTGGTGATGTGTGATGCTTACACACCGGCCGG 321
Query 340 AGAGCCGATTCCGACGAACAAAAGG--CATGCGGCGGCTAAGATCTTTGAAGA-CCCTAG 396
||| || |||||||| ||||| ||| || | | || | || ||||| || | ||| |
Sbjct 322 AGATCCAATTCCGACCAACAATAGGAACAAG-GCCGTC-AAAATCTTCGATCATCCC-AA 378
Query 397 TGTTG-TCGCCGAAGAAACATGGTACGGAATTGAACAAGAGTATACCTT-GTTGCAAAAG 454
|| || || ||||| | |||| || || || ||||| || || || || ||||
Sbjct 379 TG-TGAAAGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATTACTT-AAAAAA 436
Query 455 GATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG-TTTCCCAGGTCCTCAGGGACCGTA 513
|| | |||||||| |||||||||| | || || ||| || ||||||||||| |||||
Sbjct 437 GACGTGAAGTGGCCATTAGGTTGGCCTCTTGGTGGCTTT-CCTGGTCCTCAGGGTCCGTA 495
Query 514 CTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTTGATTCTCATTACAA 573
||| |||| |||||| ||||||||||||||||| | ||||| || ||| |||| || ||
Sbjct 496 CTATTGTGCAGTTGGTGCAGACAAAGCCTTTGGTCGTGACATTGTCGATGCTCACTATAA 555
Query 574 AGCTTGTCTTTACGCCGGAATCAATGTCAGTGG-GACTAACGGCGAAGTTATGCCTGGCC 632
||||||||||||| |||| | | | | |||| | | || || ||||| |||||||| |
Sbjct 556 AGCTTGTCTTTACTCCGGTTTGAGTATTGGTGGTG-CCAATGGTGAAGTCATGCCTGGAC 614
Query 633 AGTGGGAGTTCCAAGTCGGTCCCACCGTTGGAATCGCTGCCGCCGATCAGGTCTGGGTTG 692
| |||||||| ||| || |||| || ||||| || | ||||| ||||| | |||||||
Sbjct 615 AATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCCGGTGATCAATTATGGGTTG 674
Query 693 CTCGTTACATTCTTGAGAGGATCACAGA-AT-TGGCTGGAGTTGTTCTGTCTC-TA-GAC 748
||||||||||||||||||||||||| || || || | || || | | |||||| | |||
Sbjct 675 CTCGTTACATTCTTGAGAGGATCACTGAGATATG-C-GGTGT-GAT-TGTCTCATTCGAC 730
Query 749 CCTAAACCAATTCC-GGGAGATTGGAATGGTGCAGGGGCACACACAAA-TTACAGTACGA 806
|| |||||||| || ||| ||||||||||| |||| || || || || || |||||| |
Sbjct 731 CCAAAACCAAT-CCAGGGTGATTGGAATGGAGCAGCAGCTCATACGAACTT-CAGTACAA 788
Query 807 AGTCGATGAGAGAA-GATGGAGGGTACGAGGTGAT-AAAGAAAGCAATAGAGAAGCTTGG 864
| |||||||| ||| |||||||| | || |||| |||||| |||||| |||||||||
Sbjct 789 AATCGATGAG-GAAAGATGGAGGATTGGATTTGATTAAAGAA-GCAATAAAGAAGCTTGA 846
Query 865 ATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGCAACGAGCGTCGTCTCACCGG 924
| || ||||| |||||||||| ||||||||||||||||||||| | |||||||| ||
Sbjct 847 AGTGAAACACAAACAACACATTGCGGCTTATGGTGAAGGCAACGAGAGGCGTCTCACTGG 906
Query 925 AAAACATGAAACCGCCGATATCAACACTTTCT-TATGGGGTGTGGCAAACCGTGGGGCAT 983
|| || |||||||| || ||||||||||||| | ||||| || ||||||||||| ||||
Sbjct 907 GAAGCACGAAACCGCAGACATCAACACTTTCTCT-TGGGGAGTCGCAAACCGTGGAGCAT 965
Query 984 C-GATTAGGGTTGGGCGTGACACTGAGCAGGCTGGAAAAGGATACTTTGAAGATCGTAGG 1042
| | | ||||| || | || || ||| | | || ||||| || ||||||||||| |||
Sbjct 966 CCG-TGAGGGTAGGAAGAGATACGGAGAAAGAAGGGAAAGGGTATTTTGAAGATCGAAGG 1024
Query 1043 CCAGCTTCGAACATGGATCCTTACACT-GTGACCTCCATGATTGCTGAATCCACAATCCT 1101
|| | || || ||||| |||||| | || |||||||||||||||||| |||| |||||
Sbjct 1025 CCTTCGTCTAATATGGACCCTTACT-TAGTTACCTCCATGATTGCTGAAACCACCATCCT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5