BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16570.1 Length=1269 Score E Sequences producing significant alignments: (Bits) Value Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1 2001 0.0 Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1 664 0.0 Ahg923181 jgi|Araly1|923181|scaffold_104462.1 617 5e-176 > Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1 Length=1229 Score = 2001 bits (1083), Expect = 0.0 Identities = 1185/1234 (96%), Gaps = 8/1234 (1%) Strand=Plus/Plus Query 7 aaaaaaaaGGTTTATTATTCTTTGAGATTCCTA-AGATATGTCTTCACTTGCAGATTTAA 65 |||||||| || ||||||||||| ||||||||| | | |||||||||||||||||||||| Sbjct 1 AAAAAAAACGTCTATTATTCTTTCAGATTCCTACA-AAATGTCTTCACTTGCAGATTTAA 59 Query 66 TCAATCTCGATCTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTG 125 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTAATCTAGATCTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTG 119 Query 126 GATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGCCTGGACCAGTGACGGATCCAT 185 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 120 GATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGCCAGGACCAGTGACGGATCCAT 179 Query 186 CGCAGTTACCGAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCGGGCGATGACA 245 || |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 180 CGGAGTTACCGAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCCGGTGATGACA 239 Query 246 GTGAAGTCATCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACA 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GTGAAGTCATCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACA 299 Query 306 TCCTTGTGATGTGTGACGCATATACACCGGCAGGAGAGCCGATTCCGACGAACAAAAGGC 365 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 300 TCCTTGTGATGTGTGACGCATATACACCTGCCGGAGAGCCGATTCCGACGAACAAAAGGC 359 Query 366 ATGCGGCGGCTAAGATCTTTGA-AGACCCTAGTGTTGTCGCCGAAGAAACATGGTACGGA 424 ||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 360 ATGCGGCCGCTAAGATCTTT-AGCGACCCTAGTGTTGTTGCCGAAGAAACATGGTACGGA 418 Query 425 ATTGAACAAGAGTATACCTTGTTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTC 484 ||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||| Sbjct 419 ATTGAGCAAGAGTACACTTTGCTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTC 478 Query 485 GGCGGTTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTT 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GGCGGTTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTT 538 Query 545 GGAAGAGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCAATGTCAGT 604 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 539 GGAAGAGACATCGTAGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCGATGTCAGT 598 Query 605 GGGACTAACGGCGAAGTTATGCCTGGCCAGTGGGAGTTCCAAGTCGGTCCCACCGTTGGA 664 || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 599 GGAACTAACGGCGAAGTGATGCCCGGCCAGTGGGAGTTCCAAGTTGGTCCCACCGTTGGA 658 Query 665 ATCGCTGCCGCCGATCAGGTCTGGGTTGCTCGTTACATTCTTGAGAGGATCACAGAATTG 724 ||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||| Sbjct 659 ATCGCTGCCGCAGATCAGGTCTGGGTCGCTCGTTACATCCTTCAGAGGATCACAGAATTG 718 Query 725 GCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGG 784 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 719 GCTGGAGTTGTTCTGTCTCTTGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGG 778 Query 785 GCACACACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTGATAAAG 844 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 779 GCACACACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTCATAAAG 838 Query 845 AAAGCAATAGAGAAGCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 904 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AAAGCGATAGAGAAGCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 898 Query 905 AACGAGCGTCGTCTCACCGGAAAACATGAAACCGCCGATATCAACACTTTCTTATGGGGT 964 || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 899 AATGAGCGTCGTCTCACAGGAAAACATGAGACCGCCGATATCAACACTTTCTTATGGGGT 958 Query 965 GTGGCAAACCGTGGGGCATCGATTAGGGTTGGGCGTGACACTGAGCAGGCTGGAAAAGGA 1024 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 959 GTGGCAAACCGAGGGGCATCGATTAGGGTTGGGCGTGACACTGAGAAGGCTGGAAAAGGA 1018 Query 1025 TACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGTGACCTCCATGATT 1084 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1019 TACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGTAACCTCCATGATT 1078 Query 1085 GCTGAATCCACAATCCTTTGGAAACCATGAAAGAAGAAACCTTGAGCCTCAAGGAATCTC 1144 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1079 GCTGAATCCACAATCCTTTGGAAACCATGAAAGAAGAAACCTTGAGCTTCAAGGAATCTC 1138 Query 1145 TATAATATCAGTTCATGTTCATTCTTCTATGGTCTCTTTCTCATTCTGAAACAGTTCTCA 1204 || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1139 TA-A-TATCAGTTCATGTTCATTCATCTATGGTCTCTTTCTCATTCTGAAACAGTTCTCA 1196 Query 1205 TGTGTTCTTTGTTTATTA-TGTTTGATTTGAAGT 1237 |||||||||||||| | | ||||||||||||||| Sbjct 1197 TGTGTTCTTTGTTT-TAAATGTTTGATTTGAAGT 1229 > Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1 Length=1270 Score = 664 bits (359), Expect = 0.0 Identities = 828/1050 (79%), Gaps = 50/1050 (5%) Strand=Plus/Plus Query 77 CTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTG 136 |||||||| |||| || | ||||||||||| ||||||||||| |||||||| || || Sbjct 115 CTCTCCGACGCCACCGAAAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAATG 174 Query 137 GATATGAGAAGCAAAGCAAGGACTTTGCCTGGACCAGTGACGGATCCATCGCAG-TTACC 195 || || ||||||||||| ||||| | || |||||||| || |||||||| || || || Sbjct 175 GACATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTCACTGATCCATCAAAGCTT-CC 233 Query 196 GAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCT-CCGGGCGATGACAGTGAAGTCA 254 ||||||||||||||||| || |||||||| || ||| || || || ||||||||||||| Sbjct 234 CAAATGGAACTACGACGGATCCAGCACCGGTCAGGCTGCC-GGAGAAGACAGTGAAGTCA 292 Query 255 -TCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCA-GAAGAGGCAACAACATCCTTGT 312 || | |||||||| || || ||||| || || |||| ||| ||||||||||||||| || Sbjct 293 TTC-TATACCCTCAGGCGATATTCAAGGATCCATTCAGGAA-AGGCAACAACATCCTGGT 350 Query 313 GATGTGTGACGCATATACACCGGCAGGAGAGCCGATTCCGACGAACAAAAGGCA-TGCGG 371 ||||||||| || || ||||| || || || || ||||| || ||||| ||||| | | Sbjct 351 GATGTGTGATGCTTACACACCAGCTGGTGATCCAATTCCAACCAACAAGAGGCACAAC-G 409 Query 372 CGGCTAAGATCTTTGAAG--ACCCTAGTGTTGTCGCCGAAGAAACATGGTACGGAATTGA 429 | ||||||||| || || |||| | |||| | | || || | ||||| |||||||| Sbjct 410 CTGCTAAGATC-TT-CAGCCACCCCAACGTTGCCTCTGAGGAGCCTTGGTATGGAATTGA 467 Query 430 ACAAGAGTATACCTTGTTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG 489 ||||| || || ||| |||||||||| | || ||||| | |||||||| || || || Sbjct 468 GCAAGAATACACTTTGATGCAAAAGGACGTGAACTGGCCAATTGGTTGGCCTGTTGGTGG 527 Query 490 TTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAG 549 |||||| || ||||||||||| ||||||||||| || ||||| ||||||||| |||| | Sbjct 528 TTTCCCTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCG 587 Query 550 AGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGG-AAT--CAATGTCAGTGG 606 ||||| || ||| | || |||||||| ||| |||||||||| | | | || || ||| Sbjct 588 TGACATTGTGGATGCACACTACAAAGCCTGTATTTACGCCGGTATTGGC-ATTTC--TGG 644 Query 607 -GACTAACGGCGAAGTTATGCCTGGCCAGTGGGAGTTCCAAGTCGGTCCCACCGTTG-GA 664 | | || || ||||| ||||||||||||||||||||||||||||| ||| |||| | Sbjct 645 TGTC-AATGGAGAAGTCATGCCTGGCCAGTGGGAGTTCCAAGTCGG-CCCT--GTTGAGG 700 Query 665 --ATCGCTGCCGCCGATCAGGTCTGGGTTGCTCGTTACATTCTTGAGAGGATCACAGA-A 721 || | ||| | ||||| |||||||||||||| ||| |||| ||||||||||| || | Sbjct 701 GTATTGGTGCTGGTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGA 760 Query 722 T-TGGCTGGAGT---TGTTCTGTCTCTAGACCCTAAACCAATTCCGGGAGATTGGAATGG 777 | | |||| || ||| | | || | ||||| |||||| | ||||| |||||||| || Sbjct 761 TCT--CTGGTGTAAATGT-CAG-CT-TCGACCCAAAACCAGTCCCGGGTGATTGGAACGG 815 Query 778 TGCAGGGGCACACA-CAAATTACAGTACGAAGTCGATGAGAGAA-GATGGAGGGT-ACGA 834 || || || ||| ||| | ||||||| ||| | ||||| ||| |||||||| | | || Sbjct 816 AGCTGGAGCTCACTGCAACT-ACAGTACTAAGACAATGAG-GAACGATGGAGGATTA-GA 872 Query 835 GGTGATAAAGAAAGCAATAGAGAAGCTTG-GATTGCGTCACAAGGAACACATTGCTGCTT 893 ||||| |||||||| |||| ||||||| | | | ||||| |||||||||||||||| Sbjct 873 AGTGATCAAGAAAGCGATAGGGAAGCTTCAGCT-GAAACACAAAGAACACATTGCTGCTT 931 Query 894 ATGGTGAAGGCAACGAGCGTCGTCTCACCGGAAAACATGAAACCGCCGATATCAACACTT 953 | |||||||||||||||||||||||||| ||||| || |||||||| || |||||||||| Sbjct 932 ACGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACGAAACCGCAGACATCAACACTT 991 Query 954 TCT-TATGGGGTGTGGCAAACCGTGGGGCATC-GATTAGGGTTGGGCGTGACACTGAGCA 1011 ||| | ||||| || ||||||||||| ||||| | |||| |||| |||||||||||| | Sbjct 992 TCTCT-TGGGGAGTCGCAAACCGTGGAGCATCCG-TTAGAATTGGACGTGACACTGAGAA 1049 Query 1012 GGCTGGAAAAGGATACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGT 1071 | || ||||| ||||| || || || ||||||||||| |||||||||||||| ||| Sbjct 1050 AGAAGGTAAAGGTTACTTCGAGGACCGAAGGCCAGCTTCTAACATGGATCCTTATGTTGT 1109 Query 1072 GACCTCCATGATTGCTGAATCCACAATCCT 1101 || |||||||| |||||| |||| ||||| Sbjct 1110 CACTTCCATGATCGCTGAAACCACCATCCT 1139 > Ahg923181 jgi|Araly1|923181|scaffold_104462.1 Length=1109 Score = 617 bits (334), Expect = 5e-176 Identities = 840/1080 (78%), Gaps = 51/1080 (5%) Strand=Plus/Plus Query 46 GTCTTCACT-TGCAGATTTAATCAATCTCGATCTCTCCGATTCCACTGACCAGATCATCG 104 |||| |||| | ||||| | | || ||||||||||| ||| ||| || | ||||||| Sbjct 31 GTCTCCACTCT-CAGATCTCCTAAACCTCGATCTCTCAGATACCA-AGA--AAATCATCG 86 Query 105 CCGAGTACATATGGATTGGTGGATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGC 164 | || ||||||||||||||||| || || ||||||| ||||||||||| ||||| || | Sbjct 87 CTGAATACATATGGATTGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGGACATTAC 146 Query 165 CTGGACCAGTGACG-GATCCATCGCAG-TTACCGAAATGGAACTACGACGGTTCAAGCAC 222 | |||||||| | | |||||| | || || || |||||||||||||| || || ||||| Sbjct 147 CAGGACCAGT-AAGTGATCCAACAAAGCTT-CCAAAATGGAACTACGATGGATCTAGCAC 204 Query 223 CGGCCAAGCTC-CGGGCGATGACAGTGAAGTCA-TCATCTACCCTCAAGCTATCTTCAAA 280 || ||||| | | || |||||||||||||||| || | || ||||| || || ||||| Sbjct 205 CGATCAAGC-CGCTGGAGATGACAGTGAAGTCATTC-TTTATCCTCAGGCAATATTCAAG 262 Query 281 GACCCCTTCA-GAAGAGGCAACAACATCCTTGTGATGTGTGACGCATATACACCGGCAGG 339 ||||| |||| |||| || |||||||| || ||||||||||| || || |||||||| || Sbjct 263 GACCCATTCAGGAAG-GGGAACAACATTCTGGTGATGTGTGATGCTTACACACCGGCCGG 321 Query 340 AGAGCCGATTCCGACGAACAAAAGG--CATGCGGCGGCTAAGATCTTTGAAGA-CCCTAG 396 ||| || |||||||| ||||| ||| || | | || | || ||||| || | ||| | Sbjct 322 AGATCCAATTCCGACCAACAATAGGAACAAG-GCCGTC-AAAATCTTCGATCATCCC-AA 378 Query 397 TGTTG-TCGCCGAAGAAACATGGTACGGAATTGAACAAGAGTATACCTT-GTTGCAAAAG 454 || || || ||||| | |||| || || || ||||| || || || || |||| Sbjct 379 TG-TGAAAGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATTACTT-AAAAAA 436 Query 455 GATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG-TTTCCCAGGTCCTCAGGGACCGTA 513 || | |||||||| |||||||||| | || || ||| || ||||||||||| ||||| Sbjct 437 GACGTGAAGTGGCCATTAGGTTGGCCTCTTGGTGGCTTT-CCTGGTCCTCAGGGTCCGTA 495 Query 514 CTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTTGATTCTCATTACAA 573 ||| |||| |||||| ||||||||||||||||| | ||||| || ||| |||| || || Sbjct 496 CTATTGTGCAGTTGGTGCAGACAAAGCCTTTGGTCGTGACATTGTCGATGCTCACTATAA 555 Query 574 AGCTTGTCTTTACGCCGGAATCAATGTCAGTGG-GACTAACGGCGAAGTTATGCCTGGCC 632 ||||||||||||| |||| | | | | |||| | | || || ||||| |||||||| | Sbjct 556 AGCTTGTCTTTACTCCGGTTTGAGTATTGGTGGTG-CCAATGGTGAAGTCATGCCTGGAC 614 Query 633 AGTGGGAGTTCCAAGTCGGTCCCACCGTTGGAATCGCTGCCGCCGATCAGGTCTGGGTTG 692 | |||||||| ||| || |||| || ||||| || | ||||| ||||| | ||||||| Sbjct 615 AATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCCGGTGATCAATTATGGGTTG 674 Query 693 CTCGTTACATTCTTGAGAGGATCACAGA-AT-TGGCTGGAGTTGTTCTGTCTC-TA-GAC 748 ||||||||||||||||||||||||| || || || | || || | | |||||| | ||| Sbjct 675 CTCGTTACATTCTTGAGAGGATCACTGAGATATG-C-GGTGT-GAT-TGTCTCATTCGAC 730 Query 749 CCTAAACCAATTCC-GGGAGATTGGAATGGTGCAGGGGCACACACAAA-TTACAGTACGA 806 || |||||||| || ||| ||||||||||| |||| || || || || || |||||| | Sbjct 731 CCAAAACCAAT-CCAGGGTGATTGGAATGGAGCAGCAGCTCATACGAACTT-CAGTACAA 788 Query 807 AGTCGATGAGAGAA-GATGGAGGGTACGAGGTGAT-AAAGAAAGCAATAGAGAAGCTTGG 864 | |||||||| ||| |||||||| | || |||| |||||| |||||| ||||||||| Sbjct 789 AATCGATGAG-GAAAGATGGAGGATTGGATTTGATTAAAGAA-GCAATAAAGAAGCTTGA 846 Query 865 ATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGCAACGAGCGTCGTCTCACCGG 924 | || ||||| |||||||||| ||||||||||||||||||||| | |||||||| || Sbjct 847 AGTGAAACACAAACAACACATTGCGGCTTATGGTGAAGGCAACGAGAGGCGTCTCACTGG 906 Query 925 AAAACATGAAACCGCCGATATCAACACTTTCT-TATGGGGTGTGGCAAACCGTGGGGCAT 983 || || |||||||| || ||||||||||||| | ||||| || ||||||||||| |||| Sbjct 907 GAAGCACGAAACCGCAGACATCAACACTTTCTCT-TGGGGAGTCGCAAACCGTGGAGCAT 965 Query 984 C-GATTAGGGTTGGGCGTGACACTGAGCAGGCTGGAAAAGGATACTTTGAAGATCGTAGG 1042 | | | ||||| || | || || ||| | | || ||||| || ||||||||||| ||| Sbjct 966 CCG-TGAGGGTAGGAAGAGATACGGAGAAAGAAGGGAAAGGGTATTTTGAAGATCGAAGG 1024 Query 1043 CCAGCTTCGAACATGGATCCTTACACT-GTGACCTCCATGATTGCTGAATCCACAATCCT 1101 || | || || ||||| |||||| | || |||||||||||||||||| |||| ||||| Sbjct 1025 CCTTCGTCTAATATGGACCCTTACT-TAGTTACCTCCATGATTGCTGAAACCACCATCCT 1083 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47424908748 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5