BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16590.1
Length=2272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356181 jgi|Araly1|356181|fgenesh1_pg.C_scaffold_7003354 2627 0.0
Ahg927779 jgi|Araly1|927779|scaffold_300236.1 841 0.0
Ahg891959 jgi|Araly1|891959|Al_scaffold_0007_3945 671 0.0
> Ahg356181 jgi|Araly1|356181|fgenesh1_pg.C_scaffold_7003354
Length=1872
Score = 2627 bits (1422), Expect = 0.0
Identities = 1742/1893 (92%), Gaps = 36/1893 (2%)
Strand=Plus/Plus
Query 182 ATGAAGAACAAGACCAA-TTTAGGTCTCTCAGTCTTCTTC-TTCTTTATATGTCTCGTTT 239
|||||||||| |||||| || || | |||| ||||||||| |||| | | |||||| |||
Sbjct 1 ATGAAGAACACGACCAACTTAAGCT-TCTCTGTCTTCTTCTTTCTCT-TCTGTCTCATTT 58
Query 240 CCGTGACATCAGATCTAGAAGCTGATCGACGAGC-TCTAATCGCACTTCGTGACGGTGTT 298
|||| ||||||||||||||||||||||||||||| | |||| || || ||||| |||||
Sbjct 59 CCGTAACATCAGATCTAGAAGCTGATCGACGAGCAT-TAATAGCTCTCCGTGATGGTGTC 117
Query 299 CATGGGCGTCCATTGCTGTGGAATCTAACAGCACCACCGTGTACTTGGGGAGGAGTCCAA 358
||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 118 CATGGCCGTCCATTGCTCTGGAATTTATCAGCACCACCGTGTACTTGGGGAGGAGTCCAA 177
Query 359 TGTGAGTCGGGTCGTGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCGGGTCCATTA 418
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TGTGATTCGGGTCGGGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCTGGTCCATTA 237
Query 419 CCAATCGCCATCGGAAACCTTACAAAGCTCGAAACTTTATCATTCCGATTCAATGCTCTT 478
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CCAATCGCCATCGGAAACCTAACAAAGCTCGAAACTTTATCTTTCCGATTCAATGCTCTT 297
Query 479 AACGGTCCTCTCCCGCCGGATTTCGCAAACCTAACTCTTCTCCGTTACTTGTATCTTCAA 538
|| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 298 AATGGTCCTCTCCCGCCGGATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAA 357
Query 539 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTCTACCAAACATTATTCGG 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTTTACCAAACATTATTCGG 417
Query 599 ATCAATCTCGCCCAGAATAATTTCTTGGGTCGGATCCCGGATAATGTCAATTCTGCAACC 658
||||||||||| || || ||||||| ||||||||||||||||||||||||||| || |||
Sbjct 418 ATCAATCTCGCTCAAAACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACC 477
Query 659 CGGTTAGCTACTCTTTACTTGCAGGATAATCAACTCACCGGTCCAATCCCGGAGATTAAG 718
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 478 CGGTTAGCTACTCTTTACTTGCAGGATAATCAACTTACTGGTCCGATCCCGGAGATTAAG 537
Query 719 ATTAAGCTTCAACAGTTTAATGTCTCATCCAATCAGTTAAACGGGTCGATTCCGGATCCG 778
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 538 ATTAAGCTTCAGCAGTTTAATGTCTCGTCGAATCAGTTAAACGGGTCGATTCCGGATCCG 597
Query 779 TTGTCGGGTATGCCCAAAACCGCCTTTTTAGGCAATTTGCTCTGTGGGAAGCCGTTAGAT 838
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 598 TTGTCGGGTATGCCCAAAACCGCTTTTTTAGGGAATTTGCTATGTGGGAAGCCGTTAGAT 657
Query 839 GCTTGCCCTGTCAATGGCACTGGAAACGGTACTGTGACGCCTGGAGGAAAAGGGAAAAGC 898
|||||||| |||||||| | ||||| |||||||||||| |||||||||||||
Sbjct 658 GCTTGCCCCGTCAATGG---T---AACGGCACTGTGACGCCT---CTAAAAGGGAAAAGC 708
Query 899 GACAAGTTATCTGCCGGAGCTATTGTCGGAATAGTGATCGGCTGTTTCGTCTTGCTTCTC 958
||||||||||||||||||||||||| ||| ||||||||||| |||||| | |||||||
Sbjct 709 GACAAGTTATCTGCCGGAGCTATTGCCGGGATAGTGATCGGTTGTTTCTTAGGGCTTCTC 768
Query 959 GTGCTTTTCTTGATCGTGTTCTGTCTCTGTAGAAAGAAGAAGAAAGAGCAAGTCGTCCAA 1018
|| ||||||||||| |||||||||| ||||||||||||||||||||| || |||| |
Sbjct 769 TTGTTTTTCTTGATCTTGTTCTGTCTTTGTAGAAAGAAGAAGAAAGAGGAA---GTCCGA 825
Query 1019 TCGAGAAGCATCGAAGCAGCTCCTGTTCCGACCTCATCAGCAGCCGTGGCTAAGGAAT-- 1076
||||||| ||| |||||||||||| ||||||||||||| || ||||| ||||||||||
Sbjct 826 TCGAGAAACATTGAAGCAGCTCCTATTCCGACCTCATCCGCCGCCGTAGCTAAGGAATCG 885
Query 1077 -C----G--AATGGTCCTCCTGCGGTGGTGGCTAATGGTGCA--TC-TGAAAATGGTGTA 1126
| | |||||||||||| | |||||||||||||||| | | |||||||| |
Sbjct 886 GCGGTGGCCAATGGTCCTCCT-C--CGGTGGCTAATGGTGCACCACATTTAAATGGTGCA 942
Query 1127 TCAAAGAACCCTGCTGCAGTGAGTAAAGATCTGACATTTTTCGTGAAATCTTTCGGCGAG 1186
|||||||| || ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 943 TCAAAGAA-CC--CTGCAGTGAGTAAAGATTTGACATTTTTTGTGAAATCTTTCGGCGAG 999
Query 1187 TTTGATCTTGATGGATTGCTGAAAGCTTCTGCGGAAGTACTTGGTAAAGGAACGTTCGGA 1246
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1000 TTTGATCTTGATGGATTGTTAAAAGCTTCTGCGGAAGTACTTGGTAAAGGAACATTCGGA 1059
Query 1247 TCTTCGTACAAGGCCAGTTTCGATCACGGATTAGTGGTGGCTGTGAAACGATTGAGAGAT 1306
|| ||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 1060 TCATCGTACAAGGCGAGTTTCGATAACGGATTAGTGCTTGCTGTGAAACGATTGAGAGAT 1119
Query 1307 GTCGTGGTTCCTGAGAAAGAGTTCAGAGAGAAATTGCAGGTTCTTGGATCCATAAGCCAT 1366
|| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 1120 GTGGTGGTTCCTGAGAAAGAGTTTAGAGAGAAATTACAGGTTCTTGGATCCTTAAGCCAT 1179
Query 1367 GCCAATCTTGTGACATTGATTGCATATTACTTCAGCCGCGACGAAAAGCTCGTTGTTTTC 1426
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CCCAATCTTGTGACATTAATCGCATATTACTTCAGCCGCGACGAAAAGCTCGTTGTTTTC 1239
Query 1427 GAATACATGTCTAGAGGAAGCTTGTCTGCGCTGTTACACGGGAACAAAGGAAGTGGCAGA 1486
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1240 GAATACATGTCTAGAGGAAGCTTGTCTGCGCTTTTACACGGGAACAAAGGAAGTGGCAGA 1299
Query 1487 AGTCCATTGAATTGGGAAACGAGAGCCAATATAGCATTAGGAGCCGCAAGAGCAATTAGC 1546
|||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||||
Sbjct 1300 AGTCCATTGAATTGGGAAACAAGAGCCGCTATAGCGTTAGGAGCCGCAAGAGCGATTAGC 1359
Query 1547 TACCTCCATTCGCGTGACGCGACAACATCTCATGGCAACATTAAATCATCTAACATTCTA 1606
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1360 TACCTCCATTCGCGTGACGCGACAACATCTCATGGCAACATTAAATCTTCTAACATTCTC 1419
Query 1607 TTGTCAGAATCCTTTGAAGCTAAGGTCTCTGACTACTGTCTTGCACCTATGATCAGCCCT 1666
||||| ||||||||||| || ||||||||||| |||||| |||| |||||||||||||||
Sbjct 1420 TTGTCTGAATCCTTTGAGGCCAAGGTCTCTGATTACTGTTTTGCGCCTATGATCAGCCCT 1479
Query 1667 ACTTCTACACCTAACCGCATTGATGGTTACCGAGCTCCTGAAGTAACCGATGCTCGTAAA 1726
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 ACTTCTACACCTAACCGTATTGATGGTTACCGAGCTCCTGAAGTAACCGATGCTCGTAAA 1539
Query 1727 ATCTCCCAAAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATTACTCACAGGG 1786
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1540 ATCTCTCAAAAGGCTGATGTTTATAGCTTTGGTGTTCTCATTCTTGAATTACTCACAGGG 1599
Query 1787 AAATCTCCAACGCATCAGCAGTTACACGAAGAAGGAGTAGATTTACCGAGATGGGTTTCA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 AAATCTCCAACGCATCAGCAGTTACACGAAGAAGGAGTAGATTTACCGAGATGGGTTTCA 1659
Query 1847 TCGATCACTGAACAACAATCACCATCAGATGTGTTTGATCCAGAGCTCACAAGGTATCAA 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 TCGATCACTGAACAACAATCACCATCAGATGTGTTTGATCCAGAGCTCACAAGGTATCAA 1719
Query 1907 TCGGACAGCAATGAGAACATGATCAGGCTTTTAAACATCGGTATAAGTTGTACGACTCAG 1966
||||||| ||| ||||||||||||| ||||||||| || ||||||||||||||| ||||
Sbjct 1720 TCGGACATCAACGAGAACATGATCAAGCTTTTAAAGATGGGTATAAGTTGTACGGCTCAA 1779
Query 1967 TATCCAGATAGTCGTCCTACAATGCCTGAAGTCACAAGACTCATCGAGGAGGTTTCTCGT 2026
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1780 TATCCAGATAGTCGTCCTACAATGCCTGAAGTCACAAGGCTCATCGAGGAGGTTTCTCGT 1839
Query 2027 TCACCTGCTTCACCAGGTCCTTTGTCCGATTGA 2059
||||||||||||||| |||||||||| ||||||
Sbjct 1840 TCACCTGCTTCACCAAGTCCTTTGTCTGATTGA 1872
> Ahg927779 jgi|Araly1|927779|scaffold_300236.1
Length=1926
Score = 841 bits (455), Expect = 0.0
Identities = 778/932 (83%), Gaps = 30/932 (3%)
Strand=Plus/Plus
Query 1145 GTGAGTAAAGATCTGACATTTTTCGTGAAATCTTTCGGCGAGTTTGATCTT-GATGGATT 1203
|||||||||||| |||| |||||||||||||||||||| || || ||| || ||||||||
Sbjct 989 GTGAGTAAAGATTTGACCTTTTTCGTGAAATCTTTCGGGGAATTCGAT-TTGGATGGATT 1047
Query 1204 GCTGAAAGCTTCTGCGGAAGTACTTGGTAAAGGAAC-GTTCGGATCTTCGTACAAGGCCA 1262
| |||| ||||| || || || ||||| |||||||| ||| || |||||||| ||||| |
Sbjct 1048 GTTGAAGGCTTCAGCTGAGGTCCTTGGGAAAGGAACAGTT-GGGTCTTCGTATAAGGCAA 1106
Query 1263 G-TTTCGATCACGGATTAGTGGTGGCTGTGAAACGATTGAGAGATGTCGTGGTTCCTGAG 1321
| ||| ||||| |||||||||||||||||||| || || ||||| || ||||| ||||||
Sbjct 1107 GCTTT-GATCATGGATTAGTGGTGGCTGTGAAGCGTTTAAGAGACGTTGTGGTGCCTGAG 1165
Query 1322 AAAGAGTTCAGAGAGAAATTGCAGGTTCTT-GGATCCATAAGCCATGCCAATCTTGTGAC 1380
|||||||||||||||| |||||||||| || ||||| || || |||||||||||||||||
Sbjct 1166 AAAGAGTTCAGAGAGAGATTGCAGGTT-TTGGGATCAATGAGTCATGCCAATCTTGTGAC 1224
Query 1381 AT-TGATTGCATATTACTTCAGCCGCGACGAAAAGC-TCGTTGT-TTTCGAATACATGTC 1437
| |||| || || || |||||||||||||| |||| || |||| ||| || ||||||||
Sbjct 1225 -TCTGATCGCTTACTATTTCAGCCGCGACGAGAAGCTTC-TTGTCTTT-GAGTACATGTC 1281
Query 1438 TAGAGGAAGCTTGTCTGCGCTGTTACACGGGAACAAAGGAAGTGGCAGAAGTCCATTGAA 1497
||||||||||||||||||||| || |||||||||||||||| || |||| ||| |||||
Sbjct 1282 TAGAGGAAGCTTGTCTGCGCTATTGCACGGGAACAAAGGAAACGGGAGAACTCCGTTGAA 1341
Query 1498 TTGGGAAACGAGAGCCAATATAGCATTAGGAGCCGCAAGAGCAATTAGCTACCTCCATTC 1557
|||||||| |||||| |||||| ||||||| |||||||| ||||||||||| |||||
Sbjct 1342 CTGGGAAACTAGAGCCGGTATAGCCGTAGGAGCTGCAAGAGCGATTAGCTACCTACATTC 1401
Query 1558 GCGTGACGCGACAACATCTCATGGCAACATTAAATCATCTAACATTCTATTGTCAGAATC 1617
|||||| || ||||| |||||||| |||||||| || || ||||| ||||| || || ||
Sbjct 1402 GCGTGATGCCACAACTTCTCATGGAAACATTAAGTCCTCGAACATACTATTATCTGACTC 1461
Query 1618 CTTTGAAGCTAAGGTCTCTGACTACTGTCTTGCACCTATGATCAGCCCTACTTCTACACC 1677
|| |||||||||||||||||| ||| ||||||| ||||| || || |||| ||| ||||
Sbjct 1462 CTATGAAGCTAAGGTCTCTGATTACGGTCTTGCTCCTATCATTAGTTCTACATCTGCACC 1521
Query 1678 TAACCGCATTGATGGTTACCGAGCTCCTGAAGTAACCGATGCTCGTAAAATCTCCCAAAA 1737
|||||| |||||||| ||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 1522 TAACCGTATTGATGGCTACCGTGCCCCTGAAGTCACCGATGCTCGCAAAATCTCCCAAAA 1581
Query 1738 GGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATTACTCACAGGGAAATCTCCAAC 1797
|||||||| || ||||| || || || || ||||||||||||||||| || ||||||||
Sbjct 1582 AGCTGATGTCTATAGCTTTGGCGTCCTAATCCTTGAATTACTCACAGGTAAGTCTCCAAC 1641
Query 1798 GCATCAGCAGTT-ACACGAAGAAGGAGTAGATTTACCGAGATGGGTTTCA-TC-GATCAC 1854
||||||||| || | | |||||||| || ||||| || |||||||| || || | | ||
Sbjct 1642 GCATCAGCAATTGA-ATGAAGAAGGTGTCGATTTGCCAAGATGGGTC-CAATCTGTT-AC 1698
Query 1855 TGAACAACAATCACCATCAGATGTGTTTGATCCAGAGCTCACAAGGTATCAATCGGACAG 1914
|| ||||||||||| || |||||| ||||||| |||||||||||||| ||| | || |
Sbjct 1699 CGATCAACAATCACCGTCCGATGTGCTTGATCCCGAGCTCACAAGGTACCAACCTGAGGG 1758
Query 1915 CAATGAGAACATGAT-CAGGCTT-TTAAACATCGGTATAAGTTGTACGACTCAGTATCC- 1971
|||||||||||| || | | || || || |||||||| ||||||||| |||| | |||
Sbjct 1759 CAATGAGAACATCATTC-GT-TTATTGAAGATCGGTATGAGTTGTACGGCTCAAT-TCCC 1815
Query 1972 AGATAGTCGTCCTACAATG-CCTGAAGTCACAAGACTCATCGAGGAGGTTTCTCGTTCAC 2030
||||||||||||| ||||| || |||||||| |||||||| ||||||||||| | ||||
Sbjct 1816 AGATAGTCGTCCTTCAATGGCC-GAAGTCACCAGACTCATTGAGGAGGTTTCCCATTCAT 1874
Query 2031 CTG-CTTCACCAGGTCCTTTGTCCGATTGATT 2061
||| || | ||| ||| | ||||| |||||
Sbjct 1875 CTGGCTCC-CCAAATCCAGTATCCGACTGATT 1905
Score = 326 bits (176), Expect = 6e-88
Identities = 666/888 (75%), Gaps = 92/888 (10%)
Strand=Plus/Plus
Query 173 AAGAAGAAGATGAAGAACAAGAC-CAATTTAGGTCTCTC---AGTCTTCTTCTTC-T-TT 226
||||||||||||||| ||||| | || || ||||||| |||||||||||| | ||
Sbjct 14 AAGAAGAAGATGAAGTACAAG-CGTAAGCTAAGTCTCTCTGTTGTCTTCTTCTTCGTCTT 72
Query 227 ATATGTCTCGTTTCCGTGACATCAGATCTAGAAGCTGATC-GACGAGCTCTAATCGCACT 285
|| ||||| | ||||| ||||||||||| |||| | || ||||| || |||| |
Sbjct 73 CTA--TCTCGCGGCGGTGACTTCAGATCTAGATTCTGACCGGA-GAGCTTTACTCGCTGT 129
Query 286 TCGTGACGGTGTTCATGGGCGTCCATTGCTGTGGAATC-TAACAGC-AC--CACCGTGTA 341
|||| | |||||| ||| ||||| ||| | ||||| | | | || | | || ||||
Sbjct 130 TCGTAATAGTGTTCGTGGCCGTCCTTTGTTATGGAA-CATGAGTGCTTCTTCTCCTTGTA 188
Query 342 CTTGGGGA-GGAGTCCA-ATGTGAGT-CGGGTCGTGTCACAGCACTCCGATTACCCGGTG 398
|| || | ||||| || || || | ||||||| ||||| || |||||||||||||| |
Sbjct 189 ATT-GGCACGGAGT-CACTTGCGA-TGCGGGTCGGGTCACGGCTCTCCGATTACCCGGCG 245
Query 399 -TGGGTTTA-TCGGGTCCATTACCAATC---GCCATCGGAAACCTTACAAAGCTCGAA-A 452
| |||||| || ||| | ||||| ||| | || || || || || |||| || |
Sbjct 246 CT-GGTTTATTC-GGTTCTTTACCCATCGGTGGAATTGGTAATCTAACCGAGCT-TAAGA 302
Query 453 CTTTATCAT-TCCGATTCAATGCTCTTAAC-GGTCCTCTCCC-GCCGGATTTCGCAAACC 509
|| | || | ||||||||||| ||| | | ||||| |||| | |||||||| ||||||
Sbjct 303 CTCTCTC-TCTCCGATTCAATTCTC-TCTCTGGTCCAATCCCTG-CGGATTTCTCAAACC 359
Query 510 TAACTCTTCTCCGTTACTTGTATCTTCAAGGAAACGCA-TTTTCCGGCGAGATTCCTTCG 568
| ||| ||||||||||||||||| ||||| || | | |||||||| |||||||| |||
Sbjct 360 TTGTTCTCCTCCGTTACTTGTATCTCCAAGGTAATG-ACTTTTCCGGTGAGATTCCGTCG 418
Query 569 TTTCTCTTCACTCTACCAAACATTATTCGGA-TCAATCTCGCCCAGAATAATTTCTTGGG 627
||||||||||| || |||||| || || || | ||||| | ||||||| |||| |||
Sbjct 419 TTTCTCTTCACGCTTCCAAAC-CTAATCAGACTTAATCTTGGGGAGAATAAGTTCTCGGG 477
Query 628 TCGGATCCCGGATAATGTCAATTCTGCAACCCGGTTAGCT-ACTCTTTACTT-GC-AGGA 684
|||||||||||||||||||||||||||||||||||| | | ||||| || || | ||||
Sbjct 478 TCGGATCCCGGATAATGTCAATTCTGCAACCCGGTT-GATTACTCTGTATTTAGAGAGGA 536
Query 685 TAATCAACTCACCGGTCCAATCCCGGAGATTAAGATTAAG-CTTCAACAGTTTAATGTCT 743
| ||||||| | ||||| ||||| ||||| | | || | ||||||||||| ||||| |
Sbjct 537 -A-TCAACTCTCAGGTCCGATCCCTGAGATCACGCTTC-GTCTTCAACAGTTCAATGTTT 593
Query 744 CATCCAATCAGTTAAACGGGTCGATTCCGGATCCGTTGTCGGGTATG-CC-CAAAACCGC 801
| || ||||| |||||||| ||||||||| || |||||||| | || || | || ||||
Sbjct 594 CTTCTAATCAATTAAACGGATCGATTCCGAATTCGTTGTCGACT-TGGCCTCGAA-CCGC 651
Query 802 CTTTTTA-GGCAATT-TGCTCTGTGGGAAGCCGTTAGATGCTTGCCCTGTCA-ATG-GCA 857
|||| | || || | |||||||||||||| ||| | |||| | || | | ||
Sbjct 652 -TTTTGAAGGGAACACT-CTCTGTGGGAAGCCCTTAAACACTTGTGAGG-CAGA-GAGCC 707
Query 858 C---T-G-GAAAC-GG---TACTG-TGACGCCTG--GA-GGAAAAGGGAAAAGCGACAAG 904
| | | || | || | | | ||||| | || |||||||| | | |||||||
Sbjct 708 CCAATAGTGACGCTGGAGGTCCCAAT-ACGCC-GCCGAAGGAAAAGG-ATA-GCGACAAA 763
Query 905 TTATCTGCCGGAGCTATTGTCGGAATAGTGATCGGCTGT-TTCGTCTTG-CT-TCT-CGT 960
||||| ||||||||||||| |||||| |||||||| ||| || || | | || | | | |
Sbjct 764 TTATCCGCCGGAGCTATTGCCGGAATTGTGATCGGATGTGTT-GT-TGGTCTAT-TGC-T 819
Query 961 GCTT-TTCTTGAT-CGTGTTCTGTCTCTGTAGAAAGAAGAA-GAAAGA 1005
|||| || ||||| | ||||||||||||||||||||| ||| ||||||
Sbjct 820 GCTTCTT-TTGATTC-TGTTCTGTCTCTGTAGAAAGA-GAAAGAAAGA 864
> Ahg891959 jgi|Araly1|891959|Al_scaffold_0007_3945
Length=492
Score = 671 bits (363), Expect = 0.0
Identities = 444/483 (92%), Gaps = 6/483 (1%)
Strand=Plus/Plus
Query 182 ATGAAGAACAAGACCAA-TTTAGGTCTCTCAGTCTTCTTC-TTCTTTATATGTCTCGTTT 239
|||||||||| |||||| || || | |||| ||||||||| |||| | | |||||| |||
Sbjct 1 ATGAAGAACACGACCAACTTAAGCT-TCTCTGTCTTCTTCTTTCTCT-TCTGTCTCATTT 58
Query 240 CCGTGACATCAGATCTAGAAGCTGATCGACGAGC-TCTAATCGCACTTCGTGACGGTGTT 298
|||| ||||||||||||||||||||||||||||| | |||| || || ||||| |||||
Sbjct 59 CCGTAACATCAGATCTAGAAGCTGATCGACGAGCAT-TAATAGCTCTCCGTGATGGTGTC 117
Query 299 CATGGGCGTCCATTGCTGTGGAATCTAACAGCACCACCGTGTACTTGGGGAGGAGTCCAA 358
||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 118 CATGGCCGTCCATTGCTCTGGAATTTATCAGCACCACCGTGTACTTGGGGAGGAGTCCAA 177
Query 359 TGTGAGTCGGGTCGTGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCGGGTCCATTA 418
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TGTGATTCGGGTCGGGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCTGGTCCATTA 237
Query 419 CCAATCGCCATCGGAAACCTTACAAAGCTCGAAACTTTATCATTCCGATTCAATGCTCTT 478
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CCAATCGCCATCGGAAACCTAACAAAGCTCGAAACTTTATCTTTCCGATTCAATGCTCTT 297
Query 479 AACGGTCCTCTCCCGCCGGATTTCGCAAACCTAACTCTTCTCCGTTACTTGTATCTTCAA 538
|| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 298 AATGGTCCTCTCCCGCCGGATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAA 357
Query 539 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTCTACCAAACATTATTCGG 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTTTACCAAACATTATTCGG 417
Query 599 ATCAATCTCGCCCAGAATAATTTCTTGGGTCGGATCCCGGATAATGTCAATTCTGCAACC 658
||||||||||| || || ||||||| ||||||||||||||||||||||||||| || |||
Sbjct 418 ATCAATCTCGCTCAAAACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACC 477
Query 659 CGG 661
|||
Sbjct 478 CGG 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85550690270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5