BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16600.1
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941156 jgi|Araly1|941156|scaffold_601700.1 1498 0.0
> Ahg941156 jgi|Araly1|941156|scaffold_601700.1
Length=1005
Score = 1498 bits (811), Expect = 0.0
Identities = 946/1007 (94%), Gaps = 25/1007 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAGGCAACCATGTTGTGACAAAGTAGGGTTAAAGAAAGGGCCATGGACTATTGAA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGGGAGGCAACCATGTTGTGATAAAGTAGGGTTAAAGAAAGGGCCATGGACTATTGAA 81
Query 61 GAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCATTGCTGTTGGAGAGCTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 GAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCATTGCTGTTGGAGAGCTCTT 141
Query 121 CCCAAGCTTTCTGGACTATTGCGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTAT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 142 CCCAAGCTTTCTGGACTATTGAGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTAT 201
Query 181 TTAAGACCTGATTTAAAAAGAGGTCTTTTATCAGAATATGAAGAACAAAAGGTCATTAAT 240
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 202 TTAAGACCTGATTTAAAAAGAGGCCTTTTATCAGAATATGAAGAACAAATGGTCATTGAT 261
Query 241 CTCCATGCGCAACTTGGCAATAGATGGTCAAAGATTGCCTCTCATCTACCAGGAAGAACT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 CTCCATGCCCAACTTGGCAATAGATGGTCAAAGATTGCCTCTCATCTACCAGGAAGAACT 321
Query 301 GATAATGAAATAAAGAACCATTGGAACACACACATAAAGAAAAAGCTAAGGAAAATGGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 322 GATAATGAAATAAAGAACCATTGGAACACACACATAAAGAAAAAGCTAAGGAAGATGGGC 381
Query 361 ATTGACCCTTTGACCCATAAGCCTCTCTCTGAACAAGAAGCTTCACAACAAGCTCAAGGG 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 382 ATTGACCCTTTGACCCATAAGCCTCTCTCTGAACATGAAGCTTCACAACAAGCTCAAGGG 441
Query 421 AGAAAGAAAAGTTTAGTGCCTCATGATGACAAGAACCCAAAACAAGATCAACAA-ACCAA 479
|| |||||||| || | |||||||||||||||||||||||||||||||||| || | |||
Sbjct 442 AGCAAGAAAAGCTTCGGGCCTCATGATGACAAGAACCCAAAACAAGATCAAGAAGATCAA 501
Query 480 -AGACGAACAAGAACAACATCAATTAGAGCAAGCTTTGGAGAAGAACAACACATCAGTGT 538
| || || | | | | | ||| ||||||| |||||||||||||||||||||||| |
Sbjct 502 CAAACCAA-AGG--CGA-A-CAA---GAGCAAGATTTGGAGAAGAACAACACATCAGTTT 553
Query 539 CTGGTGATGGGTTTTGCATTGATGAAGTCCCATTGCTCAATCCACATGAGATCTTGATCG 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CTAGTGATGGGTTTTGCATTGATGAAGTCCCATTGCTCAATCCACATGAGATCTTGATCG 613
Query 599 ACATCTCTTCTTCTCATCATCATCATTCTAATGATGATAATGTCAATATCAACACTAGTA 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 614 ACATCTCTTCTTCTCATCATCATCATTCTAATGATGATAACGTCAATATCAACACTAGTA 673
Query 659 AATTTACTTCTCCTTCTTCCTCTTCCTCTTCTACGTCGTCGTGTATATCATCAGTAGTAC 718
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 674 AATTTACTTCTCCTTCTTCCTCTTCCTCTTCTACCTCGTCTTGTATATCAGCAGTAGTAC 733
Query 719 CGGGTGATGAGTTCTCCAAGTTTTTTGATGAAATGGAGATTCTTGACCTCAAGTGGCTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CGGGTGATGAGTTCTCCAAGTTTTTTGATGAAATGGAGATTCTTGACCTCAAGTGGCTTT 793
Query 779 CATCCGATGATTCTTTAGGGGACGATATTAGCAAAGACGGCAAGTTCAACAACAGTACTG 838
| || | | ||| | ||| |||||||||||||||||||||||||| |||
Sbjct 794 CGTC-G--G--------GGG-ATAATAATAGCAAAGACGGCAAGTTCAACAACA---CTG 838
Query 839 TTGATACGATGAACTTGTGGGACATCAATGATTTGAGCAGCTTGGATATGTTTATGAATG 898
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTGATACAATGAACTTGTGGGACATCAATGATTTGAGCAGCTTGGATATGTTTATGAATG 898
Query 899 AACATGATGATGGTTTTATTGGAAATGGAAATGGATGTTCAAGAATGGTTTTAGATCAAG 958
| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 ACCATGATGATGGTTTTGTTGGAAATGGTAATGGATGTTCAAGAATGGTTTTAGATCAAG 958
Query 959 ATTCATGGACATTTGATCTCCTCTAGCttttagttttttcttgatgt 1005
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 ATTCATGGACATTTGATCTCCTCTAGCTTTCAGTTTTTTCTTGATGT 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37741687830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5