BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16610.2
Length=2390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488520 jgi|Araly1|488520|fgenesh2_kg.6__1654__AT5G16610.2 3127 0.0
> Ahg488520 jgi|Araly1|488520|fgenesh2_kg.6__1654__AT5G16610.2
Length=2396
Score = 3127 bits (1693), Expect = 0.0
Identities = 2199/2430 (90%), Gaps = 87/2430 (4%)
Strand=Plus/Plus
Query 1 AACTTGTTAATCAGTAAGAGCGTCTCAATTTCAGTGTTTCATCGAATATGCT-GAGGGTT 59
||||||| |||||| ||||||||||||||||||||||||||||||| || | ||| |||
Sbjct 1 AACTTGTCGATCAGTGAGAGCGTCTCAATTTCAGTGTTTCATCGAATTTG-TAGAGAGTT 59
Query 60 TCGACAATCTGAGATTCTTCTCCTTGTGTTCATGTCCAAAGGAGATTCCTTTCTTCATTC 119
|||||||||||||| | | | | |||||||||||||||| ||||||||||||
Sbjct 60 TCGACAATCTGAGA----T-T-C------T-ATGTCCAAAGGAGATTACTTTCTTCATTC 106
Query 120 TCCTTACCTTCTTAACAAACCCTTCTCTCTTATTATCTAATTCGCTTTTGTAGCTCTA-T 178
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| | || |
Sbjct 107 TCCTTACCTTCTCAACAAACCCTTCTCTCTTATTACCTAATTCGCTTTTGTAG-T-TATT 164
Query 179 ACGCAATTAGCAAA-TTT-GG--A--GAAATCTCGATTATAGCAATTTTCTTCAGTCTCC 232
| | ||| ||| ||| || | |||||||| || ||| ||| ||||||||||||||
Sbjct 165 A-TC---TAG-AAATTTTGGGAAATCGAAATCTCTATCATATCAAATTTCTTCAGTCTCC 219
Query 233 ATGTAC-T-TT-TCCTCTGTATTACTCTAATTCAAATGTATAAGATGTGCCATGAACCTA 289
|||||| | || |||||||||||| | | | || |||||||||||||||||||||
Sbjct 220 ATGTACTTATTATCCTCTGTATTA--C--A-T-GTAT-AATAAGATGTGCCATGAACCTA 272
Query 290 CCAACATCTCTTCATCGGAGTCTGATTTTACATTCCTTGAGGAAGACCATCTCCCCTTGA 349
||||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 273 CCAACATCTCTTCGTCGGAGTCTGATTTTATATTCCCTGACGAAGACCACCTCCCCTTGA 332
Query 350 CGTCACGGCGGAGTTTATTGCTATCGAGTGAAAGAGTCTCTCAACGTATCGCTGCTTATG 409
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 333 CGTCACGCCGGAGTTTATTGCTATCGAGTGAAAGAGTCTCTCAACGTATCGCTGCTTCTG 392
Query 410 TTCCTGCATCGAATGTTGATAGTGTCTTG---A-A-AA-GAGAAGAAGAAG---ATTGCT 460
|||||||||||| |||||||||| ||| | | | || |||||||||||| |||||
Sbjct 393 TTCCTGCATCGATTGTTGATAGTATCTCGAAAAGAGAAGGAGAAGAAGAAGAAAATTGCG 452
Query 461 TCAATGAGCTGGGTGTAGTGTCAAATTGTGATGCTACTGAATCTGTAAGCACGGAAATAT 520
||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 453 TCAATGAGCTGGGAGTAGTGTCAAATTGTGATGCTACGGAATCTGTAAACACAGAAATAT 512
Query 521 TGGAATCTATGAACATTGGTTGTAGTCAAGGTCTTAAAGATTCTGGAAACATAAGACCAC 580
||||||||| || |||||||||||||||||||||||| || || |||||| |||||||||
Sbjct 513 TGGAATCTACGAGCATTGGTTGTAGTCAAGGTCTTAACGAGTCGGGAAACCTAAGACCAC 572
Query 581 AGAACAACATTCTAGGATGTTGTAGTAATGCTGTAGAGAATTTTAATAGAGTCGGAGAAA 640
||||||||||||||| ||| ||||||||||| | ||||||||| || ||||||| |||||
Sbjct 573 AGAACAACATTCTAGTATGCTGTAGTAATGCCGAAGAGAATTTCAAAAGAGTCGAAGAAA 632
Query 641 CTGAAAGGAGTGATGATCTTGAACATCTCACACTGAAGGAGCGGCGCAAAATGCTTCTTG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CTGAAAGGAGTGATGATCTTGAACATCTCACACTGAAGGAGCGGCGCAAAATGCTTCTTG 692
Query 701 AAAGGGTTGCTATAAGGTTGCCTGAATCTAACGTAGAGGATAATACTGAAGATTGCGATG 760
||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct 693 AAAGGGTGGCTATAAGGTTGCCAGAATCTAACCTAGAGGATAATACTAAAGATTGCGATG 752
Query 761 AAACTGAACTTTATAAAATAAAAGCGGAGATTTCATGCGAAAATGGGATAGCTTCGTCTT 820
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 753 AAACTGATCTTTATAAAATAAAAGCTGAGATTTCATGCGAAAATGGGATAGCTTCGTCTT 812
Query 821 CTGGAGTCCAATTCAGCGGCTTTCTAGAGAAAATTGATTCTGTCCTCTGTAGAAATTTTA 880
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 813 CTGGGGTCCAATTCAGCGGCTTTCTAGAGAAAATTGATTCTGTCCTCTGTAAAAATTATA 872
Query 881 GTATATGTTCAGAATCTGGAAGTCAGCTTGGTGGAATTCAAGAGAGTGATATTCCAATAT 940
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 873 GTATAGGTTCAAAATCTGGAAGTCAGCTTAATGGAATTCAAGAGAGTGATATTCCAATTT 932
Query 941 CTCCTGAACGGTCC-TTTGATTTGTCACCTGAAGCCAGTCTACCTGAGGTATCCAGCAGC 999
||| ||||||| || |||| ||||||||||||||||||| |||||||||||||||| ||
Sbjct 933 CTCATGAACGG-CCGTTTGGTTTGTCACCTGAAGCCAGTTTACCTGAGGTATCCAGTAGA 991
Query 1000 -A--ACAAAAA-TC-C----A---AG-AA--AAA----GAG------TG--AAAAGAGTC 1032
| || || | || | | || || ||| ||| || |||||||||
Sbjct 992 GATGACGAACACTCTCCGTTAGGTAGCAACGAAAATCCGAGAAAAAGTGTGAAAAGAGTC 1051
Query 1033 CAAAGGAATCCTCTACCTTTGAATGAGAATGAAATACAGTCTACTCAAGT-AAAGGTTGA 1091
||||||||| || |||||||||| | ||||| |||||||||||||||| |||| | ||
Sbjct 1052 AAAAGGAATCATCCGCCTTTGAATGTGTATGAACTACAGTCTACTCAAGTTAAAGCT-GA 1110
Query 1092 TCCTTTGGCTGATTGCGTCATGGAGGACAATGACGAGAAAAATCCTGTTACCTCAAAGCA 1151
|||||||| |||||| ||||||||| |||| ||||||| |||||||||||||||| ||||
Sbjct 1111 TCCTTTGGGTGATTGTGTCATGGAGAACAACGACGAGAGAAATCCTGTTACCTCAGAGCA 1170
Query 1152 GATACCGGTCAAAAGAGAGGTAGAAACCCATGGTGAAGCTCTTGATGAAAATGAGCTAGA 1211
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1171 GATACCGGTCAAAAGAGAGGTAGAAACGCATGGTGAAGCCCTTGATGAAAATGAGCTAGA 1230
Query 1212 TTCTGTGAAACTGAGCTTTCGCTTGAATCGTTGTACATCTGCTCCTACACCTTTTAGGTG 1271
|||||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||
Sbjct 1231 TTCTGTGAAATTGAGCTTTCGCTTGAATCGTTGTACATCTGCTCCGAAACCGTCTAGGTG 1290
Query 1272 TATGAAAAACGAAGCGGAGACCGCTAGTGAAATGGATGAAGAT-ATTATAGACCACATGA 1330
||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 1291 TATGAAAAACGAAGCAGAGACCGCTAGTGAATTGGATGAAGATGAG-ATAGACCACATGA 1349
Query 1331 AATTAATTGATCGATTAAAGCTTCGATCTTTTCATGGCTCAGGTCATCATGAAGATCTTA 1390
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1350 AATTAATTGATCGATTAAAGCTTCGATCTTTTCATGGTTCAGGTCATCATGAAGATCTTA 1409
Query 1391 ATTCACCGTCCTCAGGGTTTAGCTTCTGTACATCTGATGAGTACGTTAAACCTTCGAGGG 1450
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1410 ATTCTCCGTCCTCAGGGTTTAGCTTCTGTACATCTGATGAATACGTTAAACCTTCAAGGG 1469
Query 1451 TATTTCGTCCTTGGAAGCGGAAGAAAACCGCCACGGACTCAATTGAGACAGCTTTGGAGG 1510
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1470 TATTTCGTCCTTGGAAGCGTAAGAAAACCGCTACGGACTCAATTGAGACGGCTCTGGAGG 1529
Query 1511 AAGATGCTCCTGGTCTTTTGCAGGTACTGATTCAACAAGGGGTAACAGTTGATGAACTTA 1570
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1530 AAGATGCTCCTGGTCTTTTGCAGGTACTGATTCAACAAGGGGTCTCAGTTGATGAACTTA 1589
Query 1571 GGCTTTATGGGAATGAAGGTGGCGATGTTCCCTCAGATGATTCACTTCTCAATGAGAGTT 1630
|||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||||
Sbjct 1590 GGCTTTATGGGAATGAAGGTGGTGATGTTTCCTCAGATGATTCACTTCTCGACGAGAGTT 1649
Query 1631 TCTCGGAGCTCGAAGATGTGATCTCGCAGCTTTTCTACAAACGCGAGACGGGCACGAAAC 1690
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1650 TCTCGGAGCTCGAAGATGTGATCTCGCAGCTTTTCTTCAAACGCGAGACGGGCACAAAAC 1709
Query 1691 TACTTAATTCAAGTTTCTCAAAAGCTTCAAGAACTAGCTATTGCTTGACCTGTCTATTCT 1750
| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1710 TTCTTAATTCAAGTTTCTCAAAAGTTTCAAGAACTAGCTATTGCTTGACCTGTCTGTTCT 1769
Query 1751 CCCTCATCGAACAGGCGCGGTATTTGCAGTTCCGCAAATGGCCTGTTGAGTGGGGCTGGT 1810
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1770 CCCTCATCGAACAGGCGCGGTATTTACAGTTCCGCAAATGGCCTGTTGAGTGGGGCTGGT 1829
Query 1811 GCCGCGATCTCCAGTCTTTCATATTCGTTTTCGAGAGACATAACCGTATAGTAATGGAAC 1870
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1830 GCCGTGATCTCCAGTCTTTCATATTTGTTTTCGAGAGACATAACCGTATAGTAATGGAAC 1889
Query 1871 GGCCTGAATATGGCTACGCAACATACTTCTTCGAGCTCAGCAATACTGCATCAATCAGAT 1930
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1890 GACCTGAATATGGCTACGCAACATACTTCTTCGAGCTCAGCAACACTGCATCAATCAGAT 1949
Query 1931 GGCAGGTCAAACGGTTAGTCTTGGCCATGAAACTAGCAAGTTGTGGCCGATATCAGCTGA 1990
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1950 GGCAGATAAAACGGTTAGTCTTGGCCATGAAACTAGCAAGCTGTGGCCGATATCAGCTGA 2009
Query 1991 TTGAAAACAAGCCGTTACTGGTAGGAGAAGATATGACTGCAGGCGAAGCAGAAGTTCTGA 2050
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2010 TTGAAAACAAGCCGTTACTGGTAGGAGAAGATATGACTGAAGGCGAAGCAGAAGTGCTGA 2069
Query 2051 TTAAGTACGGCTGGGTTGCAAACACGGGACTAGGGACGATGCTAAACTACCGCGATAGAG 2110
| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2070 TGAAGTACGGTTGGGTAGCAAACACGGGACTAGGGACGATGGTAAACTACCGCGATAGAG 2129
Query 2111 TCTACCACGACAGGAAGACCCAAAAACCGACATCAGAATGGAGATCTAAGATTTCTGAGC 2170
||||||| ||||||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 2130 TCTACCATGACAGGAAGACCCAAAAGCAGACATCAGTATGGAGATGTAAGATTTCTGAGC 2189
Query 2171 TTCTTATTGATGGCTATAACAGTGGAACCATCGTCTCTACTCTAATTGCACCTCATGATG 2230
||||| | ||||||||||||||||||||||||||||| ||| | ||||| || |||||||
Sbjct 2190 TTCTTGTCGATGGCTATAACAGTGGAACCATCGTCTCAACTTTCATTGCCCCCCATGATG 2249
Query 2231 ATGAT-AT-T-GATGACGCCGGACTTGACATGGAAGATGTTAAGCTTGAGCCTTATTGAA 2287
||||| || | ||||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2250 ATGATGATGTTGATGATGCCGGACTTGGGATGGGAGATGTTAAGCTTGAGCCTTATTGAA 2309
Query 2288 GCTGTGAATCTGTTATAGAGTCTTCTTCAACTGTTGATTGTTTATTTACTTGGTCAGCTA 2347
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2310 GCTGTGAATCTGTTATAGAGTCTTC---AACTGTTGATTGTTTATTTACTTGGTCAACTA 2366
Query 2348 AATTTAATCGGATCACAAACTACAATAAGC 2377
|||||||||| | || |||| ||||||||
Sbjct 2367 AATTTAATCGAACCATTAACTTCAATAAGC 2396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90045339180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5