BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16620.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488521 jgi|Araly1|488521|fgenesh2_kg.6__1655__AT5G16620.1 2608 0.0
> Ahg488521 jgi|Araly1|488521|fgenesh2_kg.6__1655__AT5G16620.1
Length=1599
Score = 2608 bits (1412), Expect = 0.0
Identities = 1546/1609 (96%), Gaps = 15/1609 (1%)
Strand=Plus/Plus
Query 20 cttcttcctcatcatatctttcatcttctCCACCAGAATTTGTTTTAGGCTCTCCTTCTT 79
|||||||||||||||||||||| || ||| |||||||| | |||| ||||||| ||||||
Sbjct 1 CTTCTTCCTCATCATATCTTTCCTCCTCTTCACCAGAA-TCGTTTCAGGCTCTTCTTCTT 59
Query 80 CTGTTTCTTTTTCTCCCAAAGAAACAATTAGATATGGAGAACCTTACCCTAGTTTCTTGC 139
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 60 CTGTTTCTTTTTCT-CCAAAGAAACAATTAGAAATGGAGAACCTAACCCTAGTTTCTTGC 118
Query 140 TCAGCTTCTTCTCCAAAGCTGTTAATTGGATGCAATTTCACTTCCTCGCTGAAAAACCCT 199
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 TCAGCTTCTTCTCCAAAGCTGTTAATTGGATGCAATTTCACTTCCTCGCTTAAAAACCCT 178
Query 200 ACTGGGTTTTCTCGTCGGACTCCTAATATTGTCCTCCGGTGTTCCAAAATATCTGCCTCT 259
|||||||||||||||||||||||||| ||||||||||| || |||||||| ||| |||||
Sbjct 179 ACTGGGTTTTCTCGTCGGACTCCTAAAATTGTCCTCCGCTGCTCCAAAATCTCTTCCTCT 238
Query 260 GCTCAATCTCAATCTCCCTCTTCGCGTCCGGAGAACACTGGAGAAATCGTGGTTGTGAAA 319
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 239 GCTCAATCTCAATCTCCCTCTTCGCGTCCGGATAACGTTGGAGAAATCGTGGTTGTGAAA 298
Query 320 CAGAGAAGCAAAGCTTTTGCAAGTATATTTTCTTCGAGTCGTGATCAACAGACAACTTCT 379
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 CAGAGAAGCAAAGCTTTTGCAAGTATATTTTCATCGAGTCGTGATCAACAGACAACTTCT 358
Query 380 GTTGCTTCCCCTAGTGTGCCTGTGCCACCACCATCTTCATCAACCATAGGATCACCACTT 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTGCTTCCCCTAGTGTGCCTATGCCACCACCATCTTCATCAACCATAGGATCACCACTT 418
Query 440 TTCTGGATTGGTGTTGGTGTTGGTCTATCAGCTTTGTTCTCATAT-GTAACTTCAAATTT 498
||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 419 TTCTGGATTGGTGTTGGAGTTGGGCTATCAGCTTTGTTCTCAT-TGGTAACTTCAAATTT 477
Query 499 AAAGAAATATGCAATGCAAACAGCTATGAAGACGATGATGAACCAAATGAATACGCAAAA 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAGAAATATGCAATGCAAACAGCTATGAAGACGATGATGAACCAAATGAATACGCAAAA 537
Query 559 TAGCCAGTTTAATAATTCTGGATTCCCATCAGGATCACCTTTTCCGTTTCCATTTCCTCC 618
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 TAGCCAGTTTAATAATCCTGGATTCCCATCAGGATCACCTTTTCCGTTTCCATTCCCTCC 597
Query 619 TCAAACAAGTCCTGCTTCCTCGCCATTCCAATCTCAATCCCAGTCTTCAGGTGCTACCGT 678
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 598 TCAAACAAGTCCTGCCTCCTCGCCCTTCCAATCTCAATCCCAGTCTTCAGGTGCTACTGT 657
Query 679 TGATGTGACAGCGACAAAAGTAGAGACACCTCCTTCAACTAAACCGAAACCTACACCTGC 738
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 658 TGATGTGACGGCGACAAAAGTAGATACACCTCCTTCAACTAAACCGAAACCTACACCTGC 717
Query 739 AAAGGATATAGAGGTGGATAAGCCAAGTGTTGTCTTAGAGGCAAGCaaagagaagaaaga 798
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAAGGATATAGAAGTGGATAAGCCAAGTGTTGTCTTAGAGGCAAGCAAAGAGAAGAAAGA 777
Query 799 agaaaagaaCTATGCCTTTGAAGACATTTCACCCGAGGAAACCACAAAAGAAAGCCCATT 858
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 AGAAAAGAACTATGCCTTTGAAGACATTTCACCCGAGGAAACCACCAAAGAAAGCCCATT 837
Query 859 TAGCAACTATGCAGAAGTCTCTGAAACTAATTCCCCCAAAGAAACTCGCTTGTTTGAGGA 918
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 TAGCAACTATGCTGAAGTCTCTGAAACTAGTTCCCCCAAAGAAACTCGCTTGTTTGAGGA 897
Query 919 TGTCTTGCAAAATGGAGCTGGTCCGGCAAATGGTGCCACTGCTTCAGAGGTTTTTCAATC 978
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGTTTTGCAAAATGGAGCTGGTCCGGCAAATGGTGCCACTGCTTCAGAGGTTTTTCAATC 957
Query 979 TTTGGGTGGTGGGAAAGGAGGGCCGGGTTTATCTGTAGAAGCTTTAGAGAAAATGATGGA 1038
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 TTTGGGCGGTGGGAAAGGAGGGCCGGGTTTGTCTGTAGAAGCTTTAGAGAAAATGATGGA 1017
Query 1039 AGATCCAACAGTCCAGAAGATGGTTTACCCATACTTGCCTGAGGAGATGAGGAACCCAGA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 AGATCCAACAGTCCAGAAGATGGTTTACCCATACTTGCCTGAGGAGATGAGAAACCCAGA 1077
Query 1099 AACTTTCAAATGGATGCTTAAAAATCCTCAGTACCGTCAACAACTACAGGACATGTTGAA 1158
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1078 AACTTTCAAATGGATGCTTAAAAATCCTCAGTACCGTCAACAGCTACAGGACATGTTGAA 1137
Query 1159 TAATATGAGTGGGAGTGGTGAATGGGACAAGCGAATGACAGATACATTGAAGAATTTTGA 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TAATATGAGTGGGAGTGGTGAATGGGACAAGCGAATGACAGATACATTGAAGAATTTTGA 1197
Query 1219 CCTGAATAGTCCTGAAGTGAAGCAACAATTCAATCAAATAGGACTAACTCCAGAAGAAGT 1278
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1198 CCTGAATAGTCCTGAAGTGAAGCAACAATTCAATCAAATAGGACTGACTCCAGAAGAAGT 1257
Query 1279 CATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCA 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCA 1317
Query 1339 AGCAGCGTTAATGGAATGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAA 1398
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGCAGCATTAATGGAATGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAA 1377
Query 1399 AGAGGTAATGGATGTGTTCAACAAGATATCGCAGCTCTTCCCAGGAATGACGGGTTGAAA 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGAGGTAATGGATGTGTTCAACAAGATATCGCAGCTCTTCCCAGGAATGACGGGTTGAAA 1437
Query 1459 AAGCTCACGTCTTT-GGTTCTATCAAAAATGTCACATTGTCTTTAGCTTTTTGTAGGGAG 1517
|||||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1438 AAGCTCACGTCTTTTGG----ATCAAAAATGTCACATTGTCTTTAGCTTTTTGTAGG-AG 1492
Query 1518 aaaaaaaTGtttttttttttGCAAAG-AGTCTTCAGTTTTGGTCAGATCAGAGAATTGTG 1576
|||| ||||||||||| |||| | |||||||||||| ||||||||||||||||||
Sbjct 1493 AAAATTATGTTTTTTTTAAA--AAAGGA-TCTTCAGTTTTGTTCAGATCAGAGAATTGTG 1549
Query 1577 TACCATGTTAATCTTAAACGCGGTCGGGAATTGGAGTCGTGTGAAAACG 1625
|||||||||||||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 1550 TACCATGTTAATCTTAAACGCGATCGCGAATTCGAGTCGTGT-AAAACG 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5