BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16660.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893579 jgi|Araly1|893579|Al_scaffold_0006_1575 756 0.0
Ahg477536 jgi|Araly1|477536|fgenesh2_kg.3__237__AT3G02900.1 169 3e-41
> Ahg893579 jgi|Araly1|893579|Al_scaffold_0006_1575
Length=504
Score = 756 bits (409), Expect = 0.0
Identities = 477/509 (94%), Gaps = 7/509 (1%)
Strand=Plus/Plus
Query 58 ATGGCGTCGTGTATTGCTA-CTGCTCCTCTTTCTCTATCTGGCGTGTCTCAATCTCATTA 116
|||||||| |||||||| | |||||||||||||||| ||||| | |||||||||||||||
Sbjct 1 ATGGCGTCCTGTATTGC-AGCTGCTCCTCTTTCTCTCTCTGGTGGGTCTCAATCTCATTA 59
Query 117 TGTGAAAGCTAATGGATTGTCTACAACAACAAAACTCAGTTCTATTTGTAAAACCTCTG- 175
|||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 60 TGTGAAAGCTAATGGATTGTCT---GCAACAAAGCTCAATTCTATTTGTAAAACCTCTGC 116
Query 176 ATTTGACTATTCACAAGAAATCAAACCGGACTCGCAAGTTTTCTGTTTCTGCAGGGTATC 235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 A-TTGACTATTCACAAGAAATCAAACCGGACTCGCAAGTTTTCTGTTTCTGCAGGGTATC 175
Query 236 GAGATGGAAGTAGAAGCGGAAGCAGTGGTGATTTCATTGCTGGTTTTCTTCTAGGAGGTG 295
||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 176 GAGATGGGAGTAGGAGTGGAAGCAGTGGTGATTTCATAGCTGGTTTTCTTCTAGGAGGTG 235
Query 296 CTGTCTTTGGCGCTGTTGCTTATATCTTTGCTCCACAGATCCGAAGATCGGTTCTAAATG 355
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 236 CTGTCTTTGGCGCTGTTGCTTATATCTTTGCTCCACAGATCCGGAGATCGGTTCTGAATG 295
Query 356 AAGAAGACGAGTACGGTTTTGAGAAGCCGAAACAGCCAACGTACTACGATGAAGGTTTAG 415
||||||| ||||| ||||| |||||||| |||||||||| |||||||| ||||||||||
Sbjct 296 AAGAAGATGAGTATGGTTTCAAGAAGCCGCAACAGCCAACTTACTACGACGAAGGTTTAG 355
Query 416 AGAAAACAAGAGAGACACTGAATGAGAAAATAGGACAACTTAATTCAGCGATAGACAATG 475
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 356 AGAAAACAAGAGAGACACTGAATGAGAAAATAGGACAACTTAATTCAGCCATTGACAATG 415
Query 476 TCTCTTCGCGTTTACGAGGTCGAGAAAAGAACACTTCTTCCCTAAATGTACCGGTCGAAA 535
| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 416 TTTCTTCGCGTTTAAGAGGTCGAGAAAAGAACACTTCTTCCCCAAATGTACCGGTCGAAA 475
Query 536 CTGACCCAGAGGTTGAAGCTACGACTTGA 564
|||||||||||||||||||||||||||||
Sbjct 476 CTGACCCAGAGGTTGAAGCTACGACTTGA 504
> Ahg477536 jgi|Araly1|477536|fgenesh2_kg.3__237__AT3G02900.1
Length=621
Score = 169 bits (91), Expect = 3e-41
Identities = 184/229 (80%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 259 AGTGGTGATTTCATTGCTGGTTTTCTTCTAGGAGGTGCTGTCTTTGGCGCTGTTGCTTAT 318
||| ||||||| || | ||||||||||||||| ||||||| ||||| || | ||||||
Sbjct 191 AGTAGTGATTTTGTTACCGGTTTTCTTCTAGGAAGTGCTGTGTTTGGAACTCTCGCTTAT 250
Query 319 ATCTTTGCTCCACAGATCCGAAGATCGGTTCTAAATGAAGAA-GACGAGTACGGTTTTGA 377
|||||||||||||||||||||||||| || || || ||| || || | || ||||| |
Sbjct 251 ATCTTTGCTCCACAGATCCGAAGATCAGTGCTGAACGAA-AATGA--A-TATGGTTTCAA 306
Query 378 GAAGCCGAAACAGCCAACGTACTACGATGAAGGTTTAGAGAAAACAAGAGAGACACTGAA 437
||| ||| | ||||| | |||||| ||||| || ||||| | | |||||||| | ||||
Sbjct 307 GAAACCGGAGCAGCCGATGTACTATGATGAGGGCCTAGAGGAGAGAAGAGAGATATTGAA 366
Query 438 TGAGAAAATAGGACAACTTAATTCAGCGATAGACAATGTCTCTTCGCGT 486
||||||||| || ||||| |||||||| || ||||| || || ||||||
Sbjct 367 TGAGAAAATCGGCCAACTCAATTCAGCCATTGACAACGTTTCGTCGCGT 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5