BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16690.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941166 jgi|Araly1|941166|scaffold_601710.1 3568 0.0
> Ahg941166 jgi|Araly1|941166|scaffold_601710.1
Length=2266
Score = 3568 bits (1932), Expect = 0.0
Identities = 2131/2228 (96%), Gaps = 10/2228 (0%)
Strand=Plus/Plus
Query 27 GGCACCCTCCGGCACCGTCGCCGATCCTCCGCAAT-GTTCAACCACCGATTCATTCAATT 85
||| |||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 38 GGCGCCCTCCGGCACCGTCGCCGATCCTCCGCCATCG-TCAACCACCGATTCATTCAATC 96
Query 86 CCAGCGACACAGCAGAGAATGATATTCGGCCATTTTTTGTACTTCACAAGG---CTTCGT 142
|| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 97 CCGGCGACACAGCAGAGAGTGATATTCGGCCATTTTTTGTACTCCACAAGGCTTCTTCGT 156
Query 143 CT--G-GTAATCACAATGGGAAATTAACTGGGATTGTGAAAAGCAAGCGGAGGATCGAAT 199
|| | |||||| |||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 157 CTGGGAGTAATCTCAATGGGAAATTAACTGGCACAGGGAAAAGCAAGCGGAGGATCGAAT 216
Query 200 CACCTTCACCTAAAATTGCTAAAAGATCTGAGGTCGAAAGCGTGGAAGAGGAAGATGGCC 259
||||||||||||||||| | || ||||||||||||||||| |||||||| ||||||||||
Sbjct 217 CACCTTCACCTAAAATTTCGAAGAGATCTGAGGTCGAAAGGGTGGAAGAAGAAGATGGCC 276
Query 260 AGTTTTTCTCAACTCTTCGCTTTAAAGTTTTCGAGACTGTCTGGTCGAAAATCGAGAAAA 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 277 AGTTTTTCTCAACTCTTCGCTTTAAAGTTTTCGAGACTGTCTGGTCGAAAATCGAGAAGA 336
Query 320 CAATTGAAGATGTCCTGAGAAATTCGAACTCTAAAGTATTTAGTGGGATTCATGATTGGA 379
|||| ||||| || ||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 337 CAATCGAAGACGTTCTGCGGAATTCGAACTCCAAAGTATTTAGTGGGATTCATGATTGGA 396
Query 380 TACGGGAATCATTTGAATCGATCATATCATCTGGAGCACTTAAGTTATCGGAAGCAGTTC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TACGGGAATCATTTGAATCGATCATATCATCTGGAGCACTTAAGTTATCGGAAGCAGTTC 456
Query 440 GATCTTATCCTGTTTTAACTCAAGCTTCTTCTAAGCAATTGCTTACTGCAATGGTTCTCA 499
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 457 GATCTTATCCTGTTTTAACTCAGGCTTCTTCTAAGCAATTGCTTACTGCTATGGTTCTCA 516
Query 500 CCAGGAATCTGGAAATGGTTGATGATTTATTGACATTTGAAGAACTGGAGTTGCACTTGA 559
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 517 CTAGGAATCTGGAAATGGTTGATGATTTATTGACATTTGAAGAACTGGAGTTGCATTTGA 576
Query 560 AGTCTCAAGGATGTCATGTGGCTAAGCTTTCATCTATGGACTTCTCAGCCAAGAGTGGTG 619
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AGTCTCAAGGATGCCATGTGGCTAAGCTTTCATCTATGGACTTCTCAGCCAAGAGTGGTG 636
Query 620 TAGGAGGTTGCCTTAGAGGTTTGTTACGCCAGTTTGTGATGCCAACCGTAGATGTGGCTG 679
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 637 TAGGAGGTTGCCTTAGTGGTTTGTTACGCCAGTTTGTGATGCCAACCATAGATGTGGCTG 696
Query 680 ATGTGACCATTCTCGCATCATGGTACAGAGAAAACAAAAACCATGAGAATCCCGTGGTTA 739
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 697 ATGTGACCATTCTCGCATCATGGTACCGAGAAAGCAAAAACCATGAGAATCCCGTGGTTA 756
Query 740 TAATTGTGGATGATACAGAGAGATGCTGTGGTCCTGTACTGTCGGATTTAATTCTTATAT 799
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 757 TAATTGTGGATGATACAGAGAGATGCTGTGGGCCCGTACTGTCGGATTTAATTCTTATAT 816
Query 800 TAAGCGAATGGGCAATCAAAGTTCCAA-TTTTTCTGATAATGGGTGTGTCCACAGCACAT 858
|||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 817 TAAGCGAATGGGCAGTCAAAGTTCCAAGTTTTT-TGATAATGGGTGTGTCCACAGCACAT 875
Query 859 GATGCGCCTAGAAAGATATTATCAGTGAACGCGCTGCAGAGACTTTGTGCTACTAGGTTC 918
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 876 GATGCGCCTAGAAAGATATTATCAGTGAACGCGCTGCAAAGACTTTGTGCTACTAGGTTC 935
Query 919 ACTTTGAGCTCCCCGGCTGAACGGATGGATGCAGTTCTCAAGGCTGTTTTCTTAAAGCCG 978
||| |||| || ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 936 ACTCTGAGTTCTCCGGCCGAACGGATGGATGCAGTTCTCAAGGCTGTTTTTTTGAAGCCG 995
Query 979 TGTTCTGGGTTCACTGTTAGCCATAAGGTGGCACTTTTTATGAGAAGTTACTTTTTGTGT 1038
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 996 TGTTCTGGGTTCACTGTTAGCCATAAGGTGGCACTTTTTATGAGAAGCTACTTTTTGTGT 1055
Query 1039 CAAGATGGAACACTGACATCTTTTGTTAGAACTCTCAAGATAGCCTGTCTACAACATTTC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1056 CAAGATGGAACACTGACATCTTTTGTTAGAACTCTCAAGATAGCCTGTCTACAGCATTTC 1115
Query 1099 TCATTAGAGCCTTTAAGCATCATGCTCGAGCACTTTTGTCATGATGGTGTTAATCAGCTG 1158
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1116 TCATTAGAGCCTTTAAGCATCATGCTCGAGCACTTGTGTCATGATGGTGTTAATCAGCTG 1175
Query 1159 TCAGGTGAAGGCACTGAACTATTGACAGAAGCAACAATGAAACATGCCTTTGACTTGCCA 1218
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TCAGGTGAAGGTACTGGACTATTGACAGAAGCAACAATGAAACATGCCTTTGACTTGCCA 1235
Query 1219 TCTGTGACGAGGAATAAAATTACTCGGAGTACATTTGAAATGCTACCTCATTTTTTGTTG 1278
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 1236 TCTGTGATGAGGAATAAAATTACTCGGAGTACTTTTGAAATGCTACCTCATTTTGTGATG 1295
Query 1279 GACTTGCAAAGGATGCCAAACCCCTGGAGCATAGTAGTTTTGTGCTTATATGAAGCTGGA 1338
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1296 GACTTGCAAAGGATGCCAAGCCCCTGGAGCATAGTAGTTTTGTGCATATATGAAGCTGGA 1355
Query 1339 AAGTTTGATAAACTTCGATTGCTAGACATATTCTGTGAGATACTTGACCCAGAAGCACGT 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AAGTTTGATAAACTTCGATTGCTAGACATATTCTGTGAGATACTTGACCCAGAAGCACGT 1415
Query 1399 TACCTGAAATACTTTTCACCTTCGGAAATTGTTAACTCTCAGAGTCACAATTCAGGACGT 1458
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1416 TACTTGAAATACTTTTCACCTTCGGAAATCGTTAACTCTCAGAGTCACAATTCAGGAAGT 1475
Query 1459 AATAATGTTATCCGACGGGTTTTGCGCAAGCTCAGGGATCTTTCACCTTCACAGCTGTCT 1518
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 AACAATGTTATCAGACGGGTTTTGCGCAAGCTCAGGGATCTTTCACCTTCACAGCTGTCT 1535
Query 1519 AGCATGTTGAAAAGTTGGGAAAATCTCACTGCGGAGTTCACTGAGATCAATGACAAAGTT 1578
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1536 AGCATGTTGAAAAGTTGGGAAAATCTCACTACGGAGTTCAGTGAGATCAATGACAAAGTA 1595
Query 1579 ATTGAATTGCATCCGTTCATGAGAGCCGTGGAAGCAGCTGGTCAGAGACAAGGACTTCCT 1638
|| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1596 ATGGAATTGCATCCGTTCATGAGATCTGTGGAAGCAGCTGGTCAGAGACAAGGACTTCCT 1655
Query 1639 AACAGCCCAAAAAAGCATGCATCTCGAAGCAATTCAAAGCTTGAAAAAGAGCTTAAAGCC 1698
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 1656 AACAGCCCAAAAAAGCATGCATCTCGAAGCCATGCAAAGCTTGAAAAGGAGCTTAAAGCC 1715
Query 1699 ATGACTGATAAGGTTGCCACAGTCATAGAATTCATGCTAAGGGAATATATGAAGCCAGTT 1758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 ATGACTGATAAGGTTGCCACAGTCATAGAATTCATGCTAAGGGAATATATGAAGCCAGTT 1775
Query 1759 GAGAGTGTTCCTTTCCACGAAATTTTGTGTTTCAAGAATGTCGATAAACTTCAATCTGCT 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 GAGAGTGTTCCTTTCCACGAAATTTTGTGTTTCAAGAATGTCGATAAACTTCAATCTGCT 1835
Query 1819 TTACTTGGAGACCCGAGAGGCAGGATCCAATTAGATCTACTGGAATCTCACGATATCCTC 1878
|||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||
Sbjct 1836 TTACTTGGAGACCCGAGAGGTAGGATCCAATTAGATCTACTAGAATCCCACAATATCCTC 1895
Query 1879 CACTGTGTGTGCTGCAGCCAGAGAGGCACAACTCTACTGCCTTCCATGCATGATACATCG 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 CACTGTGTGTGCTGCAGCCAGAGAGGCACAACTCTACTGCCTTCCATGCATGATACATCG 1955
Query 1939 ATTTTGTATAAACTGGCGCAAGAGCACGCTGATGTCATTAACCTCCATGACTGGTATCAA 1998
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 ATTTTGTACACGCTGGCGCAAGAGCACGCTGATGTCATTAACCTCCATGACTGGTATCAA 2015
Query 1999 TCTTTCAAGACGATACTTATTCCCCGGAGTAGCAAGGCTAAACAAAAATCTAAGTCATCT 2058
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2016 TCTTTCAAGACGATACTCATTCCCAAGAGTAGCAAGGCTAAACAAAAATCTAAGTCATCT 2075
Query 2059 TCAAAATCAAAGAAACGGAAGGAAATATGCGAAGAACCAGAAGCACCCGCTGAAGCTTTA 2118
|||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 2076 TCAAAATCGAAGAAACGGAAGGATATATGTGAAGAACCAGAAGCACCTGCTGAAGCTTTA 2135
Query 2119 ATTCAAGCTCGATTTTGCAGAGCTGTGATGGAGCTTCAGATAACAGGACTTATTCGCATG 2178
||||| |||||||||||||||||| | ||||||||||||||| |||||||||| ||||||
Sbjct 2136 ATTCAGGCTCGATTTTGCAGAGCTATAATGGAGCTTCAGATAGCAGGACTTATCCGCATG 2195
Query 2179 CCTTCAAAAAGACGTCCAGATTTTGTGCAAAGAGTGGCTTTTGGTTCTTAAGAATAGTTT 2238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 CCTTCAAAAAGACGGCCAGATTTTGTGCAAAGAGTGGCTTTTGGTTCTTAAGAATAGTTT 2255
Query 2239 CAATACTT 2246
||||||||
Sbjct 2256 CAATACTT 2263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5