BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16700.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326109 jgi|Araly1|326109|fgenesh1_pm.C_scaffold_6001329 2233 0.0
> Ahg326109 jgi|Araly1|326109|fgenesh1_pm.C_scaffold_6001329
Length=1467
Score = 2233 bits (1209), Expect = 0.0
Identities = 1385/1471 (94%), Gaps = 8/1471 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAGATCCTTCTATTTTTGTTTATTCTTCTTATTCATTTCTTCAACATCAAAGCTA 60
||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 ATGACGAGATCCTTCTATTTTTGTTTATTCTTCTTATTCATTTCTTGGATATCAAAGCTA 60
Query 61 ACCACAAGCTATCCTCTCTCCACAAAGTC-ACGATGGATCGTGGACGAGAAAGGTCAAAG 119
||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 61 ACCACAAGCTATCATCTCTCCACAAAGTCTA-GATGGATCGTGGACGAGAAAGGCCAAAG 119
Query 120 GGTGAAGCTAGCATGCGTGAACTGGCCGGCTCATCTCCAGCCCACGGTGGCTGAAGGGCT 179
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 AGTGAAGCTAGCATGCGTGAACTGGCCGGCTCATCTCCAGCCCACGGTGGCCGAAGGGCT 179
Query 180 AAGCAAACAACCATTAGACTCTATCTCCAAGAAGATTGTGTCAATGGGATTTAACTGCGT 239
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AAGCAAACAACCATTAGACTCCATCTCCAAGAAGATTGTCTCAATGGGATTTAACTGCGT 239
Query 240 TAGGCTTACTTGGCCTCTTGATTTGGTGACTAATGACACATTGGCTCTTAAAGTTACCGT 299
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 240 TAGGCTTACTTGGCCTCTTGATTTGATGACTAATGACACATTGGCTCTTAATGTTACGGT 299
Query 300 TAAACAGTCTTTCGAAAGCTTGAAGTTGTTTGAAGATGTTCTTGGGATTCAAACTCACAA 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAACAGTCTTTTGAAAGCTTGAAGTTGTTTGAAGATGTTCTTGGGATTCAAACTCACAA 359
Query 360 TCCCAAATTACTTCATCTTCCCCTTTTCAATGCATTCCAGGAAGTGGTGTCGAACTTAGG 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 TCCCAAAATACTTCATCTTCCCCTTTTCAATGCATTCCAGGAAGTGGTGTCGAACCTAGG 419
Query 420 AGAAAACGGAGTAATGGTGATACTAGATAACCACTTGACAACGCCAGGCTGGTGCTGCGG 479
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACAAAACGGTGTAATGGTGATACTAGATAACCACTTGACAACGCCAGGCTGGTGCTGCGG 479
Query 480 CGATAATGACCTCGATGC-TTTCTTTGGCTACCCTCACTTTGATCCC-CTCGTCTGGGCC 537
||| ||||||||||| || ||| |||||||||||| | ||||||||| | ||||||||||
Sbjct 480 CGAGAATGACCTCGACGCCTTT-TTTGGCTACCCTAAGTTTGATCCCAC-CGTCTGGGCC 537
Query 538 AAGGGCTTGAGGAAGATGGCTACTCTTTTCCGCAATTTCACTCACGTTATTGGCATGAGC 597
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 538 AAGGGCTTGGGGAAGATGGCTACTCTTTTCCGCAATTTCACTAACGTCATTGGCATGAGC 597
Query 598 CTTAGGAACGAGCCACGTGGTGCTAGAGATTACCCTGACCTTTGGTTCAGGCATATGCCG 657
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 CTTAGGAATGAGCCACGTGGTGCTAGAGATTACCCTGACCTCTGGTTCAGGCATATGCCA 657
Query 658 CAAGGAGCAGAGGCGGTGCACGCCGCAAACCCTAAATTACTAGTCATCCTCTCAGGCATT 717
||||||||||| | ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 658 CAAGGAGCAGAAGTAGTGCACGCCGCAAACCCTAAATTACTAGTCATCCTATCCGGCATC 717
Query 718 GACTTCGATACAAACCTCTCTTTCCTCCGTGACCGTTCCGTGAACGTCAGCTTCACGGAC 777
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 718 GACTTCGACACAAACCTCTCTTTCCTCCGTGACCGTTCCGTCAACGTCAGCTTCACCAAC 777
Query 778 AAACTTGTCTTCGAGCTCCATTGGTACAGTTTCTCCGACGGCCGAGATTCGTGGAGAAAA 837
||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 778 AAACTCGTCTTCGAGCTCCATTGGTACAGTTTCTCCGACGGCAGAGATTCATGGAGAAAA 837
Query 838 CACAACTCTAATGATTTCTGCGTCAAAATTATCGAAAAGGTTACACACAACGGAGGATTC 897
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 CACAACTCTAACGATTTCTGCGTCAAAATCATCGAAAAGGTTACACACAACGGAGGATTC 897
Query 898 TTGCTTGGAAGAGGCTTTCCTTTGATCTTGAGTGAGTTTGGGACGGACCAGAGAGGCGGT 957
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 TTGATTGGGAGAGGCTTTCCTTTGATCTTGAGTGAGTTTGGGACTGACCAGAGAGGCGGT 957
Query 958 GACATGAGCGGAAACCGGTATATGAATTGTTTGGTGGCTTGGGCGGCCGAGAATGATTTG 1017
||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 958 GACATCAGCGGGAACCGGTATATGAATTGTTTGGTGGCTTGGGCAGCTGAGAATGATTTA 1017
Query 1018 GATTGGGCGGTTTGGGCCTTAACCGGAGATTATTATTTGAGAACCGGACCTGGATTGCGA 1077
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 GATTGGGCGGTTTGGGCGTTAACCGGAGATTATTATTTGAGAACCGGACCCGGATTGCGA 1077
Query 1078 CCCAACAAGAACCTTCTCTTCCATCCATCAACAGGACTCTGCGTCACTAATAATCCATCA 1137
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1078 CCCAACAACAACATTCTCTTCCATCCATCAACAGGACTCTGCGTCACCAATAATCCCTCA 1137
Query 1138 GACAATATACCAACACTTCGATTAGGACCATGCCCTAAATCCGACCCATGGACCTTTAAT 1197
|||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GACAATTTACCCACACTTGGATTAGGACCATGCCCTAAATCCGACCCATGGACCTTTAAT 1197
Query 1198 CCC-AGTGAAGGCATTCTTTGGATCAACAAAATGTGCGTCGAAGCTCCAAATGTTGTTGG 1256
||| | ||||||||||||||| |||| ||||||||||| ||||||||||| |||| |||
Sbjct 1198 CCCCAA-GAAGGCATTCTTTGGGTCAATAAAATGTGCGTGGAAGCTCCAAACGTTGCTGG 1256
Query 1257 ACAAAAGGTGAAGCTCGGAGTTGGTACCAAGTGTTCTAAGTTGGGACAAATCTCAGCTAC 1316
||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 1257 ACAAAAGGTGAAGCTTGGATTTGGCACAAAGTGTTCTAAGTTGGGACAAATCTCAGCTAC 1316
Query 1317 AAAGATGCATTTGTCGTTCAAGACAAGTAATGGTTTGTTGCTATGTCTTGACGTAGACGA 1376
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1317 TAAGATGCATTTGTCGTTCAAGACAAGTAATGGTTTATTGCTATGTCTTGACGCGGACGA 1376
Query 1377 ACGTGACAACAGCGTCGTAGCTAACCGTTGCAAGTTTTTGACCATGGATGCTTCTTGTGA 1436
|||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||
Sbjct 1377 ACGTGACAACAGCGTCGTCGCTAACCCTTGCAAGTGTTTGACCATGGATGCTTCATGTGA 1436
Query 1437 TCCAGCGAGCCAATGGTTCAAAGTTCTTTGA 1467
|||||||||||||||||||||||||||||||
Sbjct 1437 TCCAGCGAGCCAATGGTTCAAAGTTCTTTGA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5