BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16720.1 Length=2357 Score E Sequences producing significant alignments: (Bits) Value Ahg941170 jgi|Araly1|941170|scaffold_601714.1 3090 0.0 Ahg926406 jgi|Araly1|926406|scaffold_201967.1 154 3e-36 > Ahg941170 jgi|Araly1|941170|scaffold_601714.1 Length=2107 Score = 3090 bits (1673), Expect = 0.0 Identities = 1969/2106 (93%), Gaps = 43/2106 (2%) Strand=Plus/Plus Query 62 AAGCAGAGGAGCCAAAATCAATGGCGGCCAACAATTTTGCGACGAAGCTAAGCAGAAACA 121 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 AAGCAGAGGAGCCAAAATCAATGGCGGCCAACAATTTCGCGACGAAGCTAAGCAGAAACA 60 Query 122 CCAATAGAATTACCGTAATCTTGGTCTACGCATTCCTTGAATGGCTTCTCATGTTCTTTA 181 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CCAATAGAATTACAGTAATCTTGGTCTACGCATTTCTTGAATGGCTTCTCATGTTCTTTA 120 Query 182 TCTTCCTCAATTCCTTTTTCACTTACTTTATCGTCAAATTCGCCTCTTTCTTCGGTCTTA 241 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 TCTTCCTCAATTCCTTTTTCACTTACTTTATCGTCAAATTCGCTTCTTTCTTCGGTCTTA 180 Query 242 AGCAAGTATGTCTTCTCTGTCCGAAGCTAGATCGAATCTTCGAGCGAAAGCCAGAAAACA 301 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 181 AGCAAGTATGTCTTCTCTGTCCGAAGCTAGATCGAATCTTCGAGCGAAACCCAGAAAATA 240 Query 302 GATTCACTTACAAAGAGCTTTTATGTCAAAATCACATCGCCGAGCTCGCTAGTCTGAGTT 361 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 241 GATTCACTTACAGAGAGCTTTTATGTCAAAATCACATCGCCGAGCTCGCAAGTCTCAGTT 300 Query 362 TTTGCAGAACTCACGGGAAATTATCCGAATCGGCGAACTTATGCTCAGATTGCTCTAATC 421 |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 301 TTTGCACAACTCACGGGAAATTATCCGAATCGGCGAACTTGTGCTCAGATTGCTCAAATC 360 Query 422 GCGAAGAAGAACAGAGCAACATTGGTTTAGGTTTTTGCACATGTTGTCAGAAGAGCTTAG 481 | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | Sbjct 361 GTGAAGAAGAACAGAGCAACATTGGTTTAGGGTTTTGCACATGTTGTCAAAAGAGCTTGG 420 Query 482 CGGATAAACCATACCCTAATTACTTGCTTCTCAAGTCATCAATTTGGGGGAAAACTTTGG 541 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 CGGATAAACCCTACCCTAATTACTTGCTTATCAAGTCATCAATTTGGGGGAAAACTTTGG 480 Query 542 GTGACAGAGAAGATGGAGGATTGATCTTAGAGATGATCGATGATGATAAATTTGGAGATG 601 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTGATAGAGAAAATGGAGGATTGATCTTAGAGATGATCGATGATGATAAATTTGGAGATG 540 Query 602 GGTTTGAGATAGATAGAGAATCTTATCCCTTAGGGTTCTTCAGAGATAAAGCAGAAGAAG 661 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGTTTGAGACAGAGAGAGAATCTTATCCCTTAGGGTTCTTCAGAGATAAAGCAGAAGAAG 600 Query 662 GAAAGAAGCAAGACCAGCAGCAAAATGGTGAAGTGATTTCAGATGTTGAGAGTTATGGAT 721 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 601 GAAAGAAGCAAGAGCAGCAGCAAAATGGTGAAGTGATTTCAGATGTTGAGAGCTATGGTT 660 Query 722 TAAGCTTGAGAGAAGTGTCTGAAGAGGATGGGTTAAGATCTATCATCAGCAATAATTCTC 781 ||||| |||||||||| ||||| || || ||||||||||||||||||||||||||||||| Sbjct 661 TAAGCCTGAGAGAAGTTTCTGAGGAAGACGGGTTAAGATCTATCATCAGCAATAATTCTC 720 Query 782 CTGGGAACGAAG------C---------TAAATCAAGAGTTTCAGAGGATGAACAAAGGA 826 |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 721 CTGGGAACGAAGAAGGAACCCCAGAAGCTAAATCAAGAGTTTCAGAGGATGAACAAAGGG 780 Query 827 ATGATGACACAAGCAATGTTGCCACATATGGGGAAGATCAAATTTCAGGGCGTGTAGAAG 886 ||||||| || ||||||||||||||||||||| ||||||||||||||| || ||| |||| Sbjct 781 ATGATGATACTAGCAATGTTGCCACATATGGGAAAGATCAAATTTCAGTGCATGTGGAAG 840 Query 887 AAAAAGAAGAAGAAACAGGAGTAGCAGATTTGTTGTATGACCAGTTTGAGAGCAAGAATT 946 |||||||||||| |||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 841 AAAAAGAAGAAGGAACAGGAGGAGAAGATTTGTTGGATGACCAGTTTGAGAGCAAGAATT 900 Query 947 TCACTGGTAGCCAAA-TCgaagaagaagaagaagatagagaagaaACGACTAAGGAGCTT 1005 ||||| ||||||||| | |||||||||||||| |||||||||||| ||| ||||||||| Sbjct 901 TCACTTGTAGCCAAAAT-GAAGAAGAAGAAGACCATAGAGAAGAAAAGACCAAGGAGCTT 959 Query 1006 GATCCGGAAACTCCAACTTCAGTCAGTACTTTGTTTAACAAGAAACTTCATTTTCTTGCT 1065 ||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct 960 GATCCAGAAACTCCAACTTCAGTCAGTACTTTATTTAACAAGAAGCTTCTTTTTCTTGCT 1019 Query 1066 AGAAATGAGTATGCAGCTGCTGAAGATGCAGGAGATGGGAATGTATTAGTGAGTGAGATG 1125 ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1020 AGAAATGAGTATGCATCTACTGAAGATGCAGGAGATGGGAGTGTATTAGTGAGTGAGATG 1079 Query 1126 GACGGTGGCGATCCTTTAAGGACTATTGAAAGGTTGAGAGAGACAGTGAGAGCAGAACAA 1185 |||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 1080 GACGATGGCGATCCTTTAAGGACTATTGAAAGGCTAAGAGAGACTGTGAGAGCAGAACAA 1139 Query 1186 GAAGCACTGAGAGATTTATATGCAGAGCTGGAAGAAGAAAGAAGCGCGTCTGCAATATCG 1245 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GAAGCATTGCGAGATTTATATGCAGAGCTGGAAGAAGAAAGAAGCGCGTCTGCAATATCG 1199 Query 1246 GCTAACCAGACAATGGCAATGATCACGAGGCTACAAGAAGAGAAAGCGAAAGTTCAGATG 1305 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1200 GCTAACCAGACAATGGCGATGATCACGAGACTACAAGAAGAGAAAGCGAAAGTTCAAATG 1259 Query 1306 GAAGCGTTGCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTG 1365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 GAAGCGTTGCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTG 1319 Query 1366 CAGCTATTGAATCATTTGATGGTGAAACGAGAGAAAGAGAAGGAACAACTCCAGAGAGAA 1425 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 CAGCTGTTGAATCATTTGATGGTGAAACGAGAGAAAGAGAAGGAACAACTCCAGAGAGAA 1379 Query 1426 CTTGAGGTTTATCGGGCAAAGGTTTTGGAGTATGAATCGAAAGCTAAGAACAAGATCATC 1485 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | Sbjct 1380 CTTGAGGTTTATCGGGCGAAGGTTTTGGAGTATGAATCGAAAGCTAAGAACAAAATCA-C 1438 Query 1486 G-TTGTGGAAAACGAT--T--G--TG---A-G--------G---CTGATGATGATGATA- 1522 ||| ||||| | || | | || | | | ||||||||||||||| Sbjct 1439 AATTGCGGAAAGCAATGGTAAGGCTGCTGATGATAATAATGATACTGATGATGATGATAC 1498 Query 1523 -AA-GAGGAGGAGAATAGAGAAGAGGATAATTCTTCTGAGATGGATGTGGATTTGGAGAA 1580 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 TAAAGAGGAGGAAAATAGAGAAGAGGATAATTCTTCTGAGATGGATGTGGATTTGGAGAA 1558 Query 1581 GATAACATTAGATTGCGTACAACATATGAGCATGCTTGGTGAATCTTTATCAGAGTTTGA 1640 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 GATAACATTGGATTGCGTACAACATATGAGCATGCTTGGTGAATCTTTATCAGAGTTTGA 1618 Query 1641 GGAAGAGAGGTTAGTGATTTTGGATCAGCTTAAGGTGTTAGAGGATAGGCTAGTAACAAT 1700 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1619 GGAAGAGAGGTTAGTGATTTTGGATCAGCTTAAGGTGTTAGAGGAAAGGCTAGTAACAAT 1678 Query 1701 GCAGGACAAGGAATCTGCTGAGGATCCGGGAGAATTCAGCAATAGTTATGAAGAAGCGAG 1760 ||||||||| |||||||||||||| || ||||||||||| |||||||||||||||| ||| Sbjct 1679 GCAGGACAATGAATCTGCTGAGGACCCTGGAGAATTCAGAAATAGTTATGAAGAAGAGAG 1738 Query 1761 TAATGGACATGGAGGACTAACAATGGCATCAATGGCAAAGAGTCTGCTACCTCTTCTAGA 1820 ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1739 TAATGGACATGAAGGGCTAACAATGGCATCAATGGCAAAGAGTTTGCTACCTCTTCTAGA 1798 Query 1821 CGCAGCAGAGAACGAATCAGAAGACGGGTCTCAAGGACTACCAGAATCAGATGAAAAGAA 1880 ||| |||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||| Sbjct 1799 CGCGGCAGAGAACGAATCGGAAGACGGGTCTCAAGAACTACCGGAATCCGATGAAAAGAA 1858 Query 1881 CTTTGGTTCGGACAGTGAGAAACTGGAGATAATCAAACAAGTTGATAGTGTCTATGAGAG 1940 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1859 CTTTGGTTCAGACAGTGAGAAACTGGAGATCATCAAACAAGTTGATAGTGTCTATGAGAG 1918 Query 1941 GTTACAGGAGCTGGAAACAGATGGAGAGTTTCTGAAAAACTGTATGAGTTCAGCGAAGAA 2000 |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1919 GTTACAAGTGCTGGAAACAGATGGAGAGTTTCTGAAAAACTGTATGAGTTCGGCGAAGAA 1978 Query 2001 AGGTGACAAAGGAACAGATATTCTTAAAGATATATTGCAACATCTCCGCGATCTCAGAAC 2060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1979 AGGTGACAAAGGAACAGATATTCTTAAAGATATATTGCAACATCTCCGCGATCTCAGAAC 2038 Query 2061 CATTGAACTCACTAACACAATTGAAAACCAGACGACACAGGAAGAGTGATGTTTATTCAC 2120 |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 2039 AATTGAACTCACTGACACAATCGAAAACCAGACAACACAGGAAGAGTGATGTTTATTCAC 2098 Query 2121 AAGAAT 2126 |||||| Sbjct 2099 AAGAAT 2104 > Ahg926406 jgi|Araly1|926406|scaffold_201967.1 Length=2317 Score = 154 bits (83), Expect = 3e-36 Identities = 131/154 (85%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 1255 ACAATGGCAATGATCACGAGGCTACAAGAAGAGAAAGC-GAAAGTTCAGATGGAAGCGTT 1313 |||||||| ||||||| ||| | || || |||||||| | | | |||||||||||||| Sbjct 1395 ACAATGGCGATGATCAATAGGTTGCATGAGGAGAAAGCTGCGA-TGCAGATGGAAGCGTT 1453 Query 1314 GCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTGCAGCTATT 1373 |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| | || Sbjct 1454 GCAGTATCAGAGAATGATGGAGGAGCAAGCTGAGTTTGATCAAGAAGCCTTGCAGTTGTT 1513 Query 1374 GAATCAT-TTGATGGTGAAACGAGAGAAAGAGAA 1406 |||| | || |||||||| |||||||| ||||| Sbjct 1514 GAATGAGCTT-ATGGTGAATCGAGAGAAGGAGAA 1546 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88788361095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5