BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16720.1
Length=2357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941170 jgi|Araly1|941170|scaffold_601714.1 3090 0.0
Ahg926406 jgi|Araly1|926406|scaffold_201967.1 154 3e-36
> Ahg941170 jgi|Araly1|941170|scaffold_601714.1
Length=2107
Score = 3090 bits (1673), Expect = 0.0
Identities = 1969/2106 (93%), Gaps = 43/2106 (2%)
Strand=Plus/Plus
Query 62 AAGCAGAGGAGCCAAAATCAATGGCGGCCAACAATTTTGCGACGAAGCTAAGCAGAAACA 121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAGCAGAGGAGCCAAAATCAATGGCGGCCAACAATTTCGCGACGAAGCTAAGCAGAAACA 60
Query 122 CCAATAGAATTACCGTAATCTTGGTCTACGCATTCCTTGAATGGCTTCTCATGTTCTTTA 181
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CCAATAGAATTACAGTAATCTTGGTCTACGCATTTCTTGAATGGCTTCTCATGTTCTTTA 120
Query 182 TCTTCCTCAATTCCTTTTTCACTTACTTTATCGTCAAATTCGCCTCTTTCTTCGGTCTTA 241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TCTTCCTCAATTCCTTTTTCACTTACTTTATCGTCAAATTCGCTTCTTTCTTCGGTCTTA 180
Query 242 AGCAAGTATGTCTTCTCTGTCCGAAGCTAGATCGAATCTTCGAGCGAAAGCCAGAAAACA 301
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 181 AGCAAGTATGTCTTCTCTGTCCGAAGCTAGATCGAATCTTCGAGCGAAACCCAGAAAATA 240
Query 302 GATTCACTTACAAAGAGCTTTTATGTCAAAATCACATCGCCGAGCTCGCTAGTCTGAGTT 361
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 241 GATTCACTTACAGAGAGCTTTTATGTCAAAATCACATCGCCGAGCTCGCAAGTCTCAGTT 300
Query 362 TTTGCAGAACTCACGGGAAATTATCCGAATCGGCGAACTTATGCTCAGATTGCTCTAATC 421
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 301 TTTGCACAACTCACGGGAAATTATCCGAATCGGCGAACTTGTGCTCAGATTGCTCAAATC 360
Query 422 GCGAAGAAGAACAGAGCAACATTGGTTTAGGTTTTTGCACATGTTGTCAGAAGAGCTTAG 481
| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 361 GTGAAGAAGAACAGAGCAACATTGGTTTAGGGTTTTGCACATGTTGTCAAAAGAGCTTGG 420
Query 482 CGGATAAACCATACCCTAATTACTTGCTTCTCAAGTCATCAATTTGGGGGAAAACTTTGG 541
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 CGGATAAACCCTACCCTAATTACTTGCTTATCAAGTCATCAATTTGGGGGAAAACTTTGG 480
Query 542 GTGACAGAGAAGATGGAGGATTGATCTTAGAGATGATCGATGATGATAAATTTGGAGATG 601
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGATAGAGAAAATGGAGGATTGATCTTAGAGATGATCGATGATGATAAATTTGGAGATG 540
Query 602 GGTTTGAGATAGATAGAGAATCTTATCCCTTAGGGTTCTTCAGAGATAAAGCAGAAGAAG 661
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTTTGAGACAGAGAGAGAATCTTATCCCTTAGGGTTCTTCAGAGATAAAGCAGAAGAAG 600
Query 662 GAAAGAAGCAAGACCAGCAGCAAAATGGTGAAGTGATTTCAGATGTTGAGAGTTATGGAT 721
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 601 GAAAGAAGCAAGAGCAGCAGCAAAATGGTGAAGTGATTTCAGATGTTGAGAGCTATGGTT 660
Query 722 TAAGCTTGAGAGAAGTGTCTGAAGAGGATGGGTTAAGATCTATCATCAGCAATAATTCTC 781
||||| |||||||||| ||||| || || |||||||||||||||||||||||||||||||
Sbjct 661 TAAGCCTGAGAGAAGTTTCTGAGGAAGACGGGTTAAGATCTATCATCAGCAATAATTCTC 720
Query 782 CTGGGAACGAAG------C---------TAAATCAAGAGTTTCAGAGGATGAACAAAGGA 826
|||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 721 CTGGGAACGAAGAAGGAACCCCAGAAGCTAAATCAAGAGTTTCAGAGGATGAACAAAGGG 780
Query 827 ATGATGACACAAGCAATGTTGCCACATATGGGGAAGATCAAATTTCAGGGCGTGTAGAAG 886
||||||| || ||||||||||||||||||||| ||||||||||||||| || ||| ||||
Sbjct 781 ATGATGATACTAGCAATGTTGCCACATATGGGAAAGATCAAATTTCAGTGCATGTGGAAG 840
Query 887 AAAAAGAAGAAGAAACAGGAGTAGCAGATTTGTTGTATGACCAGTTTGAGAGCAAGAATT 946
|||||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 841 AAAAAGAAGAAGGAACAGGAGGAGAAGATTTGTTGGATGACCAGTTTGAGAGCAAGAATT 900
Query 947 TCACTGGTAGCCAAA-TCgaagaagaagaagaagatagagaagaaACGACTAAGGAGCTT 1005
||||| ||||||||| | |||||||||||||| |||||||||||| ||| |||||||||
Sbjct 901 TCACTTGTAGCCAAAAT-GAAGAAGAAGAAGACCATAGAGAAGAAAAGACCAAGGAGCTT 959
Query 1006 GATCCGGAAACTCCAACTTCAGTCAGTACTTTGTTTAACAAGAAACTTCATTTTCTTGCT 1065
||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 960 GATCCAGAAACTCCAACTTCAGTCAGTACTTTATTTAACAAGAAGCTTCTTTTTCTTGCT 1019
Query 1066 AGAAATGAGTATGCAGCTGCTGAAGATGCAGGAGATGGGAATGTATTAGTGAGTGAGATG 1125
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 AGAAATGAGTATGCATCTACTGAAGATGCAGGAGATGGGAGTGTATTAGTGAGTGAGATG 1079
Query 1126 GACGGTGGCGATCCTTTAAGGACTATTGAAAGGTTGAGAGAGACAGTGAGAGCAGAACAA 1185
|||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1080 GACGATGGCGATCCTTTAAGGACTATTGAAAGGCTAAGAGAGACTGTGAGAGCAGAACAA 1139
Query 1186 GAAGCACTGAGAGATTTATATGCAGAGCTGGAAGAAGAAAGAAGCGCGTCTGCAATATCG 1245
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAAGCATTGCGAGATTTATATGCAGAGCTGGAAGAAGAAAGAAGCGCGTCTGCAATATCG 1199
Query 1246 GCTAACCAGACAATGGCAATGATCACGAGGCTACAAGAAGAGAAAGCGAAAGTTCAGATG 1305
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1200 GCTAACCAGACAATGGCGATGATCACGAGACTACAAGAAGAGAAAGCGAAAGTTCAAATG 1259
Query 1306 GAAGCGTTGCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTG 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAAGCGTTGCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTG 1319
Query 1366 CAGCTATTGAATCATTTGATGGTGAAACGAGAGAAAGAGAAGGAACAACTCCAGAGAGAA 1425
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CAGCTGTTGAATCATTTGATGGTGAAACGAGAGAAAGAGAAGGAACAACTCCAGAGAGAA 1379
Query 1426 CTTGAGGTTTATCGGGCAAAGGTTTTGGAGTATGAATCGAAAGCTAAGAACAAGATCATC 1485
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1380 CTTGAGGTTTATCGGGCGAAGGTTTTGGAGTATGAATCGAAAGCTAAGAACAAAATCA-C 1438
Query 1486 G-TTGTGGAAAACGAT--T--G--TG---A-G--------G---CTGATGATGATGATA- 1522
||| ||||| | || | | || | | | |||||||||||||||
Sbjct 1439 AATTGCGGAAAGCAATGGTAAGGCTGCTGATGATAATAATGATACTGATGATGATGATAC 1498
Query 1523 -AA-GAGGAGGAGAATAGAGAAGAGGATAATTCTTCTGAGATGGATGTGGATTTGGAGAA 1580
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TAAAGAGGAGGAAAATAGAGAAGAGGATAATTCTTCTGAGATGGATGTGGATTTGGAGAA 1558
Query 1581 GATAACATTAGATTGCGTACAACATATGAGCATGCTTGGTGAATCTTTATCAGAGTTTGA 1640
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GATAACATTGGATTGCGTACAACATATGAGCATGCTTGGTGAATCTTTATCAGAGTTTGA 1618
Query 1641 GGAAGAGAGGTTAGTGATTTTGGATCAGCTTAAGGTGTTAGAGGATAGGCTAGTAACAAT 1700
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1619 GGAAGAGAGGTTAGTGATTTTGGATCAGCTTAAGGTGTTAGAGGAAAGGCTAGTAACAAT 1678
Query 1701 GCAGGACAAGGAATCTGCTGAGGATCCGGGAGAATTCAGCAATAGTTATGAAGAAGCGAG 1760
||||||||| |||||||||||||| || ||||||||||| |||||||||||||||| |||
Sbjct 1679 GCAGGACAATGAATCTGCTGAGGACCCTGGAGAATTCAGAAATAGTTATGAAGAAGAGAG 1738
Query 1761 TAATGGACATGGAGGACTAACAATGGCATCAATGGCAAAGAGTCTGCTACCTCTTCTAGA 1820
||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1739 TAATGGACATGAAGGGCTAACAATGGCATCAATGGCAAAGAGTTTGCTACCTCTTCTAGA 1798
Query 1821 CGCAGCAGAGAACGAATCAGAAGACGGGTCTCAAGGACTACCAGAATCAGATGAAAAGAA 1880
||| |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||
Sbjct 1799 CGCGGCAGAGAACGAATCGGAAGACGGGTCTCAAGAACTACCGGAATCCGATGAAAAGAA 1858
Query 1881 CTTTGGTTCGGACAGTGAGAAACTGGAGATAATCAAACAAGTTGATAGTGTCTATGAGAG 1940
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1859 CTTTGGTTCAGACAGTGAGAAACTGGAGATCATCAAACAAGTTGATAGTGTCTATGAGAG 1918
Query 1941 GTTACAGGAGCTGGAAACAGATGGAGAGTTTCTGAAAAACTGTATGAGTTCAGCGAAGAA 2000
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1919 GTTACAAGTGCTGGAAACAGATGGAGAGTTTCTGAAAAACTGTATGAGTTCGGCGAAGAA 1978
Query 2001 AGGTGACAAAGGAACAGATATTCTTAAAGATATATTGCAACATCTCCGCGATCTCAGAAC 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 AGGTGACAAAGGAACAGATATTCTTAAAGATATATTGCAACATCTCCGCGATCTCAGAAC 2038
Query 2061 CATTGAACTCACTAACACAATTGAAAACCAGACGACACAGGAAGAGTGATGTTTATTCAC 2120
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2039 AATTGAACTCACTGACACAATCGAAAACCAGACAACACAGGAAGAGTGATGTTTATTCAC 2098
Query 2121 AAGAAT 2126
||||||
Sbjct 2099 AAGAAT 2104
> Ahg926406 jgi|Araly1|926406|scaffold_201967.1
Length=2317
Score = 154 bits (83), Expect = 3e-36
Identities = 131/154 (85%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 1255 ACAATGGCAATGATCACGAGGCTACAAGAAGAGAAAGC-GAAAGTTCAGATGGAAGCGTT 1313
|||||||| ||||||| ||| | || || |||||||| | | | ||||||||||||||
Sbjct 1395 ACAATGGCGATGATCAATAGGTTGCATGAGGAGAAAGCTGCGA-TGCAGATGGAAGCGTT 1453
Query 1314 GCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTGCAGCTATT 1373
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| | ||
Sbjct 1454 GCAGTATCAGAGAATGATGGAGGAGCAAGCTGAGTTTGATCAAGAAGCCTTGCAGTTGTT 1513
Query 1374 GAATCAT-TTGATGGTGAAACGAGAGAAAGAGAA 1406
|||| | || |||||||| |||||||| |||||
Sbjct 1514 GAATGAGCTT-ATGGTGAATCGAGAGAAGGAGAA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88788361095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5