BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16740.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326112 jgi|Araly1|326112|fgenesh1_pm.C_scaffold_6001332 1886 0.0
> Ahg326112 jgi|Araly1|326112|fgenesh1_pm.C_scaffold_6001332
Length=1278
Score = 1886 bits (1021), Expect = 0.0
Identities = 1198/1284 (93%), Gaps = 9/1284 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTGTGTTGCATGTGTTGAGGAAAATAAAGGGTGTGAATGTGAGCATGAAAAACCG 60
||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGATTTGCGTTGCATGTGTTGAGGAAAATAAAGGGTGTGAATGTGAGCACGAAAAACCG 60
Query 61 GTTAGAGAGTTGGTGTTGGAGGCGGCGTCTGAAAATAGTTCATTTCTTCACTCTGTTATC 120
|| | |||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTCAAAGAGTTGGCGTTGGA---GGCATCTGAAAATAGTTCATTTCTTCACTCTGTTATC 117
Query 121 AACATGGTTGGTATGCTCATTGGACTTGGCCAACTATCTATGCCATACGCCGTTGAAAGC 180
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 118 AATATGGTTGGTATGCTCATTGGACTAGGCCAACTATCTATGCCATACGCCGTCGAAAGC 177
Query 181 GGCGGTTGGATGTCAATCTTCCTCCTCATA-TCATTCGGAATCCTCACTACCTACACTTC 239
|||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||
Sbjct 178 GGCGGTTGGATGTCAATCTTCCTCCTCATATTC-TTCGGAATCCTCACCACTTACTCTTC 236
Query 240 CCACATCCTCGGAAAATGTATCCGCCGCAACCCCAAATCAAAATCCTACTCCGATATCGG 299
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 CCACATCCTCGGAAACTGTATCCGCCGCAACCCCAAATCGAAATCCTACTCCGATATCGG 296
Query 300 CTACTCTGCCTTCGGCCGCCACGGCCGCCTCATCGTCTGCCTCTTCATCTACCTCGAAAT 359
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 297 CTACTCTGCCTTCGGCCGCCACGGCCGCCTCATCACCTCCCTCTTCATCTACCTCGAAAT 356
Query 360 CTTCATGGCCTTAGTGTCTTACACCATCTCCCTCCACGACAACATCTCCGCTGCTTTTCC 419
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 357 CTTCATGGCCTTAGTCTCTTATACCATCTCCCTCCACGACAACATCTCCGCCGCTTTTCC 416
Query 420 CGCCACTTTTTCTAACCACGGCCATTTTCCCGCGGCCAAGCTGACGGCTGTGGCGGTGGC 479
|||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 417 CGCCACTTTTTCCAACCACGGCCATTTTCCGGCGGCTAAGCTGACGGCGGTGGCGGTGGC 476
Query 480 TATCGCCTTGCCGAGTTTGTGGATAAGAGATTTGTCTTCGATCTCGTTTCTTTCTTCCGG 539
|||||||||||| || | ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 477 TATCGCCTTGCCAAGCCTATGGATTAGGGATTTGTCTTCGATCTCGTTTCTATCTTCCGG 536
Query 540 TGGTATTCTTATGTCGGCTATAATATTTGGGTCAGTGGTTTACACGGCCATCTTTGGAGG 599
||| |||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||
Sbjct 537 TGGGATTCTTATGTCGGCCATTATATTTGGGTCGGTGGTTTACACGGCCGTCTTTGGAGG 596
Query 600 CGTTATTGATGATGGAAAGATTCCGGTGCTCCGGTTAGAG-AATATTCCGACGGTTTCGG 658
||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 597 CGTTATTGATGATGGAAGGATTCCGGTGCTCCGATTAG-GTAATATTCCGACGGTTTCGG 655
Query 659 GAATCTATCTCTTTAGCTTCGGTGGACACATCGTATTTCCTAATCTCTATACTTCCATGA 718
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 656 GAATCTATCTCTTTAGTTTCGGTGGACACATCGTATTTCCTAATCTATACACTTCAATGA 715
Query 719 AAGATCCCTCCAAATTCACAAAGGTATCAATAGTAAGTTTTGCTACGGTAACGGCGTTAT 778
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 716 AAGATCCCTCCAAATTCACAAAGGTATCAATCGTAAGTTTTGCTACGGTGACGGCGTTAT 775
Query 779 ACGGAGCACTAGCCATCACAGGAGCGAAGATGTTCGGACCAAGTGTAAATTCCCAAATTA 838
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ACACCGCACTAGCCATGACAGGAGCGAAGATGTTCGGACCAAGTGTAAATTCCCAAATTA 835
Query 839 CCCTCAGTCTTCCGAAACATTTAGTAGTTACCAAGATCGCTCTTTGGGCCACTGTACTAA 898
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 836 CCCTCAGTCTTCCAAAACATTTACTAGTTACCAAGATCGCTCTTTGGGCCACTGTACTAA 895
Query 899 CCCCAATGACCAAATACGCCTTAGAGTTCGCTCCTTTGGCCATCCAGCTGGAACGTAGCC 958
|||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 896 CCCCAATGACCAAATATGCCTTAGAGTTCGCTCCTTTAGCCATTCAGCTCGAACGTAGTC 955
Query 959 TTCCTTCGACCATGACTGATCGCACCAAGCTTGTGGCTCGCGGTCTTATGGGATCAGCTC 1018
||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||| |||
Sbjct 956 TTCCTTCGACCATGAGTGATCGCACCAAGCTTTTGGCTCGTGGTCTTACGGGATCATCTC 1015
Query 1019 TGTTGCTGGTCATTCTCGCATTGGCTTTAACCGTCCCTTACTTCGGTTATGTCTTGAGCC 1078
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1016 TGTTGCTGGTCATTCTCGCATTGGCTTTAACTGTCCCTTACTTCGGTTATGTCTTAAGCC 1075
Query 1079 TCACGGGCTCTTTGGTTAGCGTCACAATCGCTGTGACATTACCGTCTGCTTTCTACTTGA 1138
|| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1076 TCTCGGGCTCGTTGGTTAGCGTCACGATCGCTGTGACATTACCGGCTGCTTTCTACTTGA 1135
Query 1139 AGATTTGCTGGGACGGGATGACGAAGTTCACACGAGCCGCCAATCTTGG-TTTCGTTGTT 1197
|||||||||||||||||||| |||| |||||| ||| |||||||| || ||| ||||||
Sbjct 1136 AGATTTGCTGGGACGGGATGTCGAAATTCACAAGAGTTGCCAATCTCGGGTTT-GTTGTT 1194
Query 1198 CTCGGGTGTGTTCTTGGAGTTTTGGGATCTTTTGAATCATCAAAGTTGCTTGTCAAAGAA 1257
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1195 CTCGGGTGTGTTCTTGGTGTTTTGGGATCGTTTGAATCATCAAAGTTGCTTGTGAAAGAA 1254
Query 1258 CTCGTTCGCGTTCATGGAGGTTGA 1281
||| ||||||||||||||||||||
Sbjct 1255 CTCATTCGCGTTCATGGAGGTTGA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5