BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16760.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488533 jgi|Araly1|488533|fgenesh2_kg.6__1667__AT5G16760.1 2313 0.0
> Ahg488533 jgi|Araly1|488533|fgenesh2_kg.6__1667__AT5G16760.1
Length=1552
Score = 2313 bits (1252), Expect = 0.0
Identities = 1484/1585 (94%), Gaps = 59/1585 (4%)
Strand=Plus/Plus
Query 1 AAAAAACCAAACTTTACGATTTCTCCTCTCTGGAA--TCTCGATTCTGTATGATCTCTTC 58
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAAAACCAAACTTTACGATTTTTCCTCTCTGGAATCTCTCGATTCTGTATGATCTCTTC 60
Query 59 GATCTAATCGAGTCTTCT-AAACGTTCCGTGTAGAATTTCAAATCTAGGGTTTGCTAAAG 117
||||||||||||| || | ||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 GATCTAATCGAGT-TTTTAAAACGTTCCGTGTAGAATTGCACATCTAGGGTTTGCTAAAG 119
Query 118 CTTGAACCTTTCTTACCCTTTTCTCTCGAAGAGGTTTTGA-TTCCTGGGCATGAATTTTT 176
|||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||
Sbjct 120 CTTGAACCTTTCTT---C---TCT-TCGAAGAGGTTTTGATTTCCTGGGCATGAATTTTT 172
Query 177 CCCTAATCTTGTTACCTTCGAAGCATAACAACAACGAAAGATGTCAGA---TTCAATCCA 233
|||||||||||||||||| ||||| | || | |||||||||||||| |||||||||
Sbjct 173 CCCTAATCTTGTTACCTTTGAAGC---AGAAGAGCGAAAGATGTCAGATTCTTCAATCCA 229
Query 234 GGAAAGATACTTAGTTGGATACGCACTCGCAGCCAAGAAACAGCATAGTTTCATCCAACC 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GGAAAGATACTTAGTTGGATACGCACTCGCAGCCAAGAAACAGCATAGTTTCATCCAACC 289
Query 294 TTCTTTGATCGAACACTCAAGGCAACGAGGCATTGATCTGGTCAAGCTTGATCCGACGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTCTTTGATCGAACACTCAAGGCAACGAGGCATTGATCTGGTCAAGCTTGATCCGACGAA 349
Query 354 ATCGTTGTTGGAGCAAGGGAAGCTTGATTGCATAATCCACAAGCTTTACGATGTGTATTG 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 ATCGTTGTTGGAGCAAGGGAAGCTTGATTGCATAATCCACAAGCTTTACGATGTGTATTG 409
Query 414 GAAGGAGAATCTTCATGAGTTTCGCGAGAAATGTCCTGGTGTTCCTGTAATCGATTTGCC 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 410 GAAGGAGAATCTTCATGAGTTTCGTGAGAAATGTCCTGGTGTTCCTGTAATCGATTTGCC 469
Query 474 TGAGGCTATCGAGCGATTGCACAATAGGGTTTCGATGCTTGAGGTGATAACTCAATTGAG 533
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TGAGGCTATCGAGCGATTACACAATAGGGTTTCGATGCTTGAGGTGATAACTCAATTGAG 529
Query 534 GTTTCCTGTTTCAGATAGCGAGAGATTTGGTGTCCCGGAGCAAGTTGTTGTTATGGATTC 593
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 530 GTTTCCTGTTTCAGATAGCGAGAGGTTTGGTGTTCCGGAGCAAGTTGTTGTTATGGATTC 589
Query 594 GAGCGTCTTGAGCGGTGGAGGAGCTTTAGGGGAGCTTAAGTTTCCGGTGATTGCTAAGCC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GAGCGTCTTGAGCGGTGGAGGAGCTTTAGGGGAGCTTAAGTTTCCGGTGATTGCTAAGCC 649
Query 654 GTTGGATGCTGATGGGAGTGCTAAATCTCATAAGATGTTTTTGATTTATGATCAAGAAGG 713
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 650 GTTGGATGCTGATGGGAGTGCCAAATCTCATAAGATGTTTTTGATTTATGATCAAGAAGG 709
Query 714 GATGAAGATTTTGAAAGCTCCTATTGTGTTGCAGGAGTTTGTGAATCATGGTGGTGTGAT 773
|||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 710 GATGAAGATTCTGAAAGCTCCGATTGTCTTGCAGGAGTTTGTGAATCATGGTGGTGTGAT 769
Query 774 CTTTAAGGTCTATGTGGTTGGAGATCATGTCAAATGTGTAAAGAGAAGATCTTTACCTGA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CTTTAAGGTCTATGTGGTTGGAGATCATGTCAAATGTGTAAAGAGAAGATCTTTACCTGA 829
Query 834 TATCTCTGAAGAGAAGATTGGGACGTCGAAAGGGTCTCTTCCGTTTTCGCAGATATCGAA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TATCTCTGAAGAGAAGATTGGGACGTCGAAAGGGTCTCTTCCGTTTTCGCAGATATCGAA 889
Query 894 TCTGACTGCTCAAGAGGACAAGAACATTGAGTATGGTGAGGATAGGAGCTTAGAGAAAGT 953
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 890 TCTGACTGCTCAAGAAGACAAGAACATAGAGTATGGTGAGGATAGGAGCTTAGAGAAAGT 949
Query 954 GGAAATGCCTCCGTTAAGTTTCTTGACAGATCTAGCAAAGGCCATGAGGGAATCAATGGG 1013
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 950 GGAGATGCCTCCATTGAGTTTCTTGACTGATCTAGCAAAGGCCATGAGGGAATCAATGGG 1009
Query 1014 ACTCAATCTCTTTAACTTCGACGTGATTAGGGATGCCAAAGATGCTAATAGGTACCTTAT 1073
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1010 ACTCAATCTCTTTAACTTCGACGTGATTAGGGATGCGAAAGATGCTAATAGGTACCTAAT 1069
Query 1074 AATTGATATTAACTACTTTCCTGGATATGCTAAGATGCCCTCTTACGAGCCTGTGTTGAC 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1070 AATTGATATTAACTACTTTCCTGGATATGCTAAGATGCCCTCTTACGAGCCTGTATTGAC 1129
Query 1134 TGAGTTCTTCTGGGACATGGTCACTAAGAAGAATCATGTCTGAGAAAT-AATCTGTTGGG 1192
||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1130 GGAGTTCTTCTGGGACATGGTCACAAAGAAGAATCATGTCTGAGAAAGGAA-C------- 1181
Query 1193 GAGTTAGCAGGAACATTGTTGGGGAGGATTTGTACCATTGCAATGTGTTGCAACTGCCAT 1252
| || | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1182 -A-TT-G--------TTGTTGGGGAGGATTTGTAACATTGCAATGTGTTGCAACTGCCAT 1230
Query 1253 TGCAATTCTGGCCTATGGTGACTAGCTGCTTTGCTAATTTTCATTTGGATTCTTGAACTT 1312
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TGCAATTCTGGCCTATGGTGCCTAGCTGCTTTGCTAATTTTCATTTGGATTCTTGAACTT 1290
Query 1313 GTGCTTTTT-------ATAt-tttttt-AGTTGTTTCTCTTTTGTTTACTTCCGAGTTTT 1363
||||||||| |||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 1291 GTGCTTTTTTTTTTTTATATATTTTTTTAGTTGTTTCTCTTTCGTTTACTTCCGAGTTTT 1350
Query 1364 GCAAAGCCATGTTCAAATGCATAACTGTTGCTACTCTTGAAAAGCATTGAATCTCTAAAT 1423
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GCAAAGCCTTGTTCAAATGCACAACTGTTGCTACTCTTGAAAAGCATTGAATCTCTAAAT 1410
Query 1424 TCTTGGCAATGTGGTCTGTTCTCAACTGTTGGTA---G-TTT-GTGATTTCTTTTCAAGC 1478
| |||||| |||| |||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1411 TATTGGCATTGTGCTCTGTTCTCAACTGTTGGTACTTGGTTTTGTGATTTCTTTTCAAGC 1470
Query 1479 TTTTATGGTGCCTGTTTTCTTCCTCAAATCTGACAAGACTGAGATATTTGATTAAGCATT 1538
||||||||||||||||||| | |||| |||||||||| | ||||| |||||||||||||
Sbjct 1471 TTTTATGGTGCCTGTTTTC--C-TCAAGTCTGACAAGAGTTAGATAGTTGATTAAGCATT 1527
Query 1539 ---GGT-ATAAGTTGATTAGTAACC 1559
|| ||||| ||||||||||||
Sbjct 1528 TTTGGCCATAAGGTGATTAGTAACC 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5