BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16770.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1 1613 0.0
Ahg477540 jgi|Araly1|477540|fgenesh2_kg.3__241__AT3G02940.1 588 4e-167
Ahg473608 jgi|Araly1|473608|fgenesh2_kg.1__3562__AT1G34670.1 213 3e-54
> Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1
Length=1248
Score = 1613 bits (873), Expect = 0.0
Identities = 1027/1098 (94%), Gaps = 23/1098 (2%)
Strand=Plus/Plus
Query 9 GATTGCCTTCATCAGAATCTTTCTCCCTTGAGAGTTCTAGGAGATCTTCAACAGCTAGTA 68
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTGCCTTCATCAGAGTCTTTCTCCCTTGAGAGTTCTAGGAGATCTTCAACAGCTAGTA 60
Query 69 ATAATGGGGCGATCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAA 128
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAATGGGGCGTTCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAA 120
Query 129 GAGGAGGATGATAAACTGATAGATCACATTCAAAAACATGGCCATGGCAGCTGGAGAGCT 188
||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GAGGAGGATGAGAAACTGATTGATCACATTCAAACACATGGCCATGGCAGCTGGAGAGCT 180
Query 189 CTTCCAAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTAAGATGGACCAAC 248
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 CTTCCGAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTGAGATGGACTAAC 240
Query 249 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACTATTATC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACAATTATC 300
Query 309 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 360
Query 369 ACGGACAATGAAATAAAAAACTATTGGAACACACATTTGAGAAAGAAACTTCTCCAAATG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGGACAATGAAATAAAAAACTATTGGAACACACATTTGAGAAAGAAACTTCTCCAAATG 420
Query 429 GGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCAGCTCTC 488
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCTGCTCTC 480
Query 489 CCGCAGCTTATAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAACCAAAATGTGCAA 548
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 481 CCGCAGCTTATAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAATCAAAACGTGCAA 540
Query 549 CTGGATGCAACAACTCTTGCTAAAGCTCAACTGCTACACACTATGATTCAAGTCCTTAGC 608
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 541 GTGGATGCAACAACTCTTGCTAAAGCTCAACTTTTACACACTATGATTCAAGTCCTTGGC 600
Query 609 ACCAATAACAACACCACCAATCCTTCTTTTTCTTCATCAACTATGCAAAACAGTAACACC 668
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 601 ACCAATAACAACACCA--A-TCCTTCTTTTTCTTCATCAACTATGCAAAACAGTAGCA-- 655
Query 669 AATCTCTTTGGCCAAGCTTCTTACTTAGAGAACCAAAATCTTTTTGGTCAGTCTCAAAAC 728
| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 A-TCTCTTTGGCCAATCTTCTTACTTAGAGAACCAAAATCATTTTGGTCAGTCTCAAAAC 714
Query 729 TTCTCTCACATTCTTGAGGA---T---GA-GA--ATTTGATGGTCAAAACCCAAATTATT 779
||||| |||||||||||| | | || || |||||||||| |||| |||||||||
Sbjct 715 TTCTCCCACATTCTTGAGAACAATCATGATGAGCATTTGATGGTAAAAAGCCAAATTATG 774
Query 780 GATAACCCTTTGGACTCTTTTTCTTCCCC-C--ATACAACCCGGTTTTCAAGATGATCAT 836
||| |||||||||| ||||||||||||| | |||||||||| |||||||||||| |||
Sbjct 775 GATCACCCTTTGGAATCTTTTTCTTCCCTGCTGATACAACCCGATTTTCAAGATGACCAT 834
Query 837 AATTCACTCCCTCTATTGGTTCCGGCGTCTCCTGAAGAATCTAAAGAAACTCAAAGGATG 896
||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||
Sbjct 835 AATTCACTCCCTCTATTGGTTCCTGCTTCTCCTGAAGAATCTAAACAAACTCAAACGATG 894
Query 897 ATCAAGAACAAAGA---CATCGTCG-ATTACCATCATCATGATGCTTCAAACCCTTCATC 952
|||||||||||||| ||| | || ||||||||||||||||| || |||| ||||||||
Sbjct 895 ATCAAGAACAAAGAGTACATTG-CGGATTACCATCATCATGATACTGCAAATCCTTCATC 953
Query 953 ATCAAACTCAACGTTTACACAAGATCATCATCACCCATGGTGTGACACTATTGATGATGG 1012
|||||| || ||||| ||||| ||||||| ||| ||||||| ||||||||||||||||||
Sbjct 954 ATCAAATTCGACGTTCACACAGGATCATCTTCAGCCATGGTTTGACACTATTGATGATGG 1013
Query 1013 AGCAAGTGATTCTTTTTGGAAAGAGATAATAGAGCAAACTTGTTCGGAACCATGGCCATT 1072
|||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1014 AGCAAGTGCTTCTTATTGGAAAGATATAATAGAGCAAACGTGTTCGGAACCATGGCCATT 1073
Query 1073 TCCTGAATAGACAAGATT 1090
||||||||||||||||||
Sbjct 1074 TCCTGAATAGACAAGATT 1091
Score = 183 bits (99), Expect = 2e-45
Identities = 144/163 (88%), Gaps = 13/163 (8%)
Strand=Plus/Plus
Query 1129 TTATTTGTTGTCGATAGAGTTAAAAGCATATTTATTCTTCACTAATCCTTACCGTGtttt 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1092 TTATTTGTTGTCGATAGAGTTAAAAGCATATTTATTCTTCACTAATCCTTACAGT-TTTT 1150
Query 1189 ttttGTAAGACCATGTGTGTGTGGTAAACATTGATCTTGTACAAACTTGATT-ACATTAC 1247
||| |||||||||||||| || | | ||||| |||||||||||||| ||| || ||||
Sbjct 1151 GTTT-TAAGACCATGTGTG-GTAG-A--CATTGTTCTTGTACAAACTTAATTTACCTTAC 1205
Query 1248 TGTATTAA-TACAAATA-T-T---CGTGTTTGTAATTACTTTC 1284
|||||||| |||||||| | | |||||||||||||||||||
Sbjct 1206 TGTATTAAATACAAATACTGTATTCGTGTTTGTAATTACTTTC 1248
> Ahg477540 jgi|Araly1|477540|fgenesh2_kg.3__241__AT3G02940.1
Length=1217
Score = 588 bits (318), Expect = 4e-167
Identities = 534/636 (84%), Gaps = 23/636 (4%)
Strand=Plus/Plus
Query 71 AATGGGGCGATCACCATGTTGCGATGAGAATGG-TCTAAAGAAAGGGCCATGGACACAAG 129
||||||| ||||||| ||||||||||||| ||| | ||||||||||||||||||| | ||
Sbjct 89 AATGGGGAGATCACCGTGTTGCGATGAGAGTGGAT-TAAAGAAAGGGCCATGGACGCCAG 147
Query 130 AGGAGGATGATAAACTGATAGATCACATTCA-AAAACATGGCCATGGCAGCTGGAGAGCT 188
| || ||| | ||||||||| |||||| | | |||||| |||||||| ||||||||||||
Sbjct 148 AAGAAGATCAGAAACTGATAAATCACA-TAAGAAAACACGGCCATGGAAGCTGGAGAGCT 206
Query 189 CTTCCAAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTAAGATGGACCAAC 248
|| || |||||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct 207 CTACCCAAGCAAGCCGGTTTAAACCGGTGTGGGAAGAGTTGCAGATTGAGATGGACTAAT 266
Query 249 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACTATTATC 308
||||||||||| || ||||| |||||||| ||||| | |||||||| ||||| || |||
Sbjct 267 TACTTGAGACCAGATATCAAAAGAGGAAACTTCACAGCTGAGGAAGAGCAAACCATCATC 326
Query 309 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 368
||||| ||||| |||||||| |||||||||||||| ||||| ||| |||| || ||||||
Sbjct 327 AACCTTCATTCTCTTCTTGGGAACAAGTGGTCGTCTATAGCTGGTCATCTCCCAGGAAGA 386
Query 369 ACGGACAATGAAATAAAAAACTATTGGAACACACAT-TTGAGAAAGAAACTTCTCCAAAT 427
||||| || |||||||| |||||||||||||| ||| || |||||||||||| | || ||
Sbjct 387 ACGGATAACGAAATAAAGAACTATTGGAACACGCATATT-AGAAAGAAACTTATTCAGAT 445
Query 428 GGGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCAGCTCT 487
|||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 446 GGGGATCGATCCCGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTCTAGCCGCTCT 505
Query 488 CCCGCAGCTTA-TAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAACCAAAATGTGC 546
|||||| || | |||| |||||||||||||||| |||||||||||| || |||||| | |
Sbjct 506 CCCGCAACT-ACTAGCTGCCGCAAATTTCAACAACCTCTTGAATCTAAATCAAAATATAC 564
Query 547 AACTGGATGCAACAACTCTTGCTAAAGCTCAACTGCTACACACTATGATTCAAGTCCTTA 606
|||| |||||||||| | |||| ||||| ||| || |||| | |||||||||||||||||
Sbjct 565 AACTTGATGCAACAAGTGTTGCAAAAGCCCAATTGTTACATAGTATGATTCAAGTCCTTA 624
Query 607 GCACCAATAACAACACCACCAATCCTTCTTTTTCTTCATCAACTATGCAAAACAGTAACA 666
||| ||| ||| ||| || ||||| || || | || | | || ||| ||||
Sbjct 625 GCAGCAA---CAATACC-----TC-TTCTTCTT-TTGA-CA--T-T-CATCACACCAACA 669
Query 667 CCAATCTCTTTGGCCAAGCTTCTTACTTAGAGAACC 702
||||||||||||||| |||||| |||||||||||
Sbjct 670 ATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACC 705
> Ahg473608 jgi|Araly1|473608|fgenesh2_kg.1__3562__AT1G34670.1
Length=1104
Score = 213 bits (115), Expect = 3e-54
Identities = 313/407 (77%), Gaps = 19/407 (5%)
Strand=Plus/Plus
Query 72 ATGGGGCGATCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAAGAG 131
|||||| | || || |||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
Query 132 GAGGATGATAAA-CTGATAGATCACATTCAAAAACATGGCCATGGCAGCTGGAGAGCTCT 190
|| ||| | ||| || || ||| ||||||| |||||||| ||||| ||||||||||| ||
Sbjct 61 GAAGATCA-AAAGCTTATTGATTACATTCATAAACATGGTCATGGAAGCTGGAGAGCCCT 119
Query 191 TCCAAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTAAGATGGACCAACTA 250
|| |||| || | ||| || | || ||||||||||||||| | || ||||| || ||
Sbjct 120 CCCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATTA 179
Query 251 CTTGAGACCTGACATCAAGAGAGGAAA-TTT-CACTGAAGAGGAAGAACAAACTATTATC 308
|||||||| |||||||| ||||| || ||| | || || ||||| ||||| || ||
Sbjct 180 TTTGAGACCAGACATCAAAAGAGGCAAGTTTTC-CTCC-GAAGAAGAGCAAACAATCCTC 237
Query 309 AACCTCCATTCCCTTCTTGGAAACAAGTGGTC-GTCGATAGCCG-GTAATCTTCCT-GGA 365
| ||||| ||| |||| || || || ||||| | | || ||| | | | || | ||
Sbjct 238 CATCTCCACTCCATTCTCGGGAATAAATGGTCAG-CTATTGCCACGCA-T-TTGCAAGGT 294
Query 366 AGAACGGACAATGAAATAAAAAACTATTGGAACACACATTTGA-GAAAGAAACTTC-TCC 423
| || || ||||| || ||||||| ||||||||||||| | | ||| |||| || |||
Sbjct 295 CGTACAGATAATGAGATCAAAAACTTTTGGAACACACATCTAAAGAA-GAAA-TTGATCC 352
Query 424 AAATGGGGATTGATCCGGTGACCCAT-AGGCCAAGAACCGACCATCT 469
| ||||| || ||||| ||||| ||| || ||||||||||||| |||
Sbjct 353 AGATGGGAATCGATCCCGTGACTCATCAG-CCAAGAACCGACC-TCT 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5