BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16780.1
Length=3061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488536 jgi|Araly1|488536|fgenesh2_kg.6__1670__AT5G16780.1 4481 0.0
> Ahg488536 jgi|Araly1|488536|fgenesh2_kg.6__1670__AT5G16780.1
Length=2945
Score = 4481 bits (2426), Expect = 0.0
Identities = 2813/2990 (94%), Gaps = 65/2990 (2%)
Strand=Plus/Plus
Query 1 GCAAAATCGTTCTCCTCTCTTCGCCACCAGAGAGTCTCTCCGTCTCTTTCCACGGCGAGT 60
||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1 GCAAAATTGTTCTCCTCTCTTGGCCACC--AGAGTCTCTCCGTCTCTTTCCACGGCGAGT 58
Query 61 TTGCGATCGTCCGCGGTTTGCTGTTTGTCGTCATCTCTCTCGTTTGAAGCATTCTTTTCT 120
||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||
Sbjct 59 TTGCGATCGTCCGCGGTTTGCTGTTAGTCGTTATCTCTCTCGCTTGAAGCATTCCTTTCT 118
Query 121 AAA-TTCTTCGCAGTTGCTAGGTCTTTATCTTCTAAACCTTACTATTCGTCGGTGTGCTT 179
||| ||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 119 AAATTTCTTGGCAGTTACTAGGGCTTTATCTTCTAAACCTTACTATTCGTC-GTGTGCTT 177
Query 180 TCGCAATTTATCTCTAAACCCTCGG-AAATTTCTCCTGCAATTCTGAGCTCTTTGTTCGT 238
||||| ||| ||||||||||||||| |||||||||||||||||||| | ||||||| |||
Sbjct 178 TCGCAGTTTCTCTCTAAACCCTCGGAAAATTTCTCCTGCAATTCTGGGTTCTTTGTCCGT 237
Query 239 CGATCCGAATATT-CAGTACTTTCCATTGAAGGTTTGATCTAGAGGT-CTTGACTA-AAG 295
|||||| |||||| ||||||||||||||||||| ||||||||||||| || | || |
Sbjct 238 CGATCCCAATATTGCAGTACTTTCCATTGAAGGCTTGATCTAGAGGTAATTCA-TAGGCG 296
Query 296 TTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAATCAGGGAAGAGAGGGCT 355
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 TT-TTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAAGCAGGGAAGAGAGGGCT 355
Query 356 GACTACGAGGGTTCGCCTGTTAGAGAACACAGAGATGGAAGGAGGAAAGAGAAGGATCAT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GACTACGAGGGTTCGCCTGTTAGAGAACACAGAGATGGAAGGAGGAAAGAGAAGGATCAT 415
Query 416 AGGAGCAAGGATAAAGAAAAGGACTATGATCGAGAAAAGATCAGGGATAAGGACCACCGC 475
|||||||||||| ||| | || | || | | |||||||||||||||||||
Sbjct 416 AGGAGCAAGGAT-----AAA-G---AT-A---AG---A-A-CAGGGATAAGGACCACCGC 457
Query 476 AGGGATaaggagaaagagagagaccgaaaaagaag-tagagatgaggacactgagaagga 534
|||||||||||||||||||||||||||||||| || |||||| | ||||||||| |||||
Sbjct 458 AGGGATAAGGAGAAAGAGAGAGACCGAAAAAG-AGATAGAGAAGGGGACACTGACAAGGA 516
Query 535 gatctctagaggtagagataaagagagggagaaagataagagtagagatcgggttaaaga 594
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 517 GATCTCTAGAGGTAGAGATAAAGAGAGGGAGAAAGATAAGACCAGAGATCGGGTAAAAGA 576
Query 595 aaaggacaaggaaaaggaaagaaatagacataaagatagagaaaatgagagggataacga 654
|||||| |||||||| |||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 577 AAAGGAGAAGGAAAAAGAAAGAGATAGACATAAAGATAGGGAAAATGAGAGGGATAGTGA 636
Query 655 gaaggaaaaagaCAAGGATAGGGCAAGAGTCAAGGAGAGAGCGAGTAAGAAAAGTCATGA 714
|||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||
Sbjct 637 AAAGGAAAAAGACAAGGATCGGTCAAGAGTGAAGGAGAGAGCCAGTAAGAAAAGTCATGA 696
Query 715 AGATGATGACGAGACTCATAAAGCTGCAGAAAGATATGAACATTCTGACAACAGAGGTCT 774
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 697 AGATGATCACGAGACTCATAAAGCTGCAGAAAGATATGAACATTTTGACAACAGAGGTCT 756
Query 775 GAATGAAGGTGGCGATAATGTTGATGCTGCATCAAGTGGGAAAGAAGCATCTGCGTTGGA 834
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 757 GAATGAAGGTGACGATAATGTTGATGCTGCATCAAGTGGGAAAGAAGCATCTGCCTTGGA 816
Query 835 CCTTCAGAATCGCATTTTGAAGATGAGAGAGGAAAGAAAGAAGAAAGCTG-A-A------ 886
|||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 817 ACTTCAGAATCGCATTTTGAAGATGAGAGAGGAAAGAAAGAAGAAAGTTGAAGATGCTTC 876
Query 887 -GATGCTTCTGATGCTCTATCATGGGTTGCAAGGAGCCGTAAGATTGAGGAAAAACGAAA 945
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 877 TGATGCTTCTGATGCTCTATCATGGGTTGCAAGGAGCCGTAAGATTGAGGAAAAAAGAAA 936
Query 946 TGCTGAGAAGCAAAGAGCACAGCAGCTCTCGAGAATTTTTGAGGAGCAGGACAATCTTAA 1005
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TGCTGAGAAGCAAAGAGCTCAGCAGCTCTCGAGAATTTTTGAGGAGCAGGACAATCTTAA 996
Query 1006 TCAAGGTGAAAATGAAGATGGCGAGGATGGCGAGCATCTATCTGGTGTTAAAGTTCTACA 1065
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 997 TCAAGGTGAAAATGAAGATGGCGAGGATGGCGGGCATCTATCTGGTGTTAAAGTTCTACA 1056
Query 1066 TGGTTTGGAGAAAGTGGTGGAAGGTGGAGCAGTTATCTTGACACTAAAAGACCAAAGTGT 1125
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TGGTTTGGATAAAGTGGTGGAAGGTGGAGCAGTTATCTTGACACTAAAAGACCAAAGTGT 1116
Query 1126 CCTTACCGATGGAGACGTTAACAATGAGATTGACATGCTAGAAAATGTGGAAATTGGAGA 1185
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CCTTGCCGATGGTGACGTTAACAATGAGATTGACATGCTAGAAAATGTGGAAATTGGAGA 1176
Query 1186 ACAGAAGCGCCGGAATGAAGCTTATGAAGCAGCCAAGAAGAAAAAGGGAATATACGATGA 1245
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1177 ACAGAAGCGTCGGAATGAAGCTTATGAAGCAGCCAAGAAGAAAAAGGGAATATATGATGA 1236
Query 1246 TAAGTTTAATGATGATCCCGGGGCAGAAAAGAAGATGCTTCCTCAGTACGATGAGGCTGC 1305
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1237 TAAGTTTAATGATGATCCCGGGGCAGAAAAGAAGATGCTTCCGCAGTACGATGAGGCTGC 1296
Query 1306 TACTGATGAGGGGATCTTTTTGGATGCAAAGGGTCGCTTCACCGGTGAAGCTGAGAAGAA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TACTGATGAGGGGATCTTTTTGGATGCAAAGGGTCGCTTCACCGGTGAAGCTGAGAAGAA 1356
Query 1366 GCTAGAGGAGCTGCGTAAGAGAATTCAGGGTCAGACGACACATACTTTTGAAGACCTTAA 1425
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1357 GCTAGAGGAGCTGCGTAAGAGAATTCAGGGTCAGACGACAAATACTTTTGAAGACCTTAA 1416
Query 1426 CTCCTCAGCAAAGGTCTCTTCAGATTACTTCTCACAGgaagaaatgctaaaattcaaaaa 1485
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1417 CTCCTCAGCAAAGGTCTCTTCAGATTACTTCTCACATGAAGAAATGCTACGGTTCAAAAA 1476
Query 1486 acccaagaaaaagaaacaattgcgtaaaaaggataaatTGGACTTAAGTATGCTTGAAGC 1545
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 1477 ACCCAAGAAAAAGAAACAATTGCGGAAAAAGGATAAATTGGACTTAAGTGTGCTGGAAGC 1536
Query 1546 AGAAGCTGTTGCATCGGGATTGGGAGCTGAAGATCTTGGTTCTCGTAAAGATGGCAGAAG 1605
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1537 AGAAGCTGTTGCATCGGGATTTGGAGCTGAAGATCTTGGTTCTCGTAAAGATGGCAGAAG 1596
Query 1606 GCAGGCCATGAAAGAAGAGAAAGAAAGGATCGAGTATGAAAAACGGAGCAATGCCTATCA 1665
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1597 GCAGGCCATGAAAGAAGAGAAAGAAAGGAACGATTATGAAAAACGGAGCAATGCCTATCA 1656
Query 1666 GGAAGCCATTGCTAAAGCTGATGAGGCATCCAGGCTACTTAGAAGGGAACAAGTTCAGCC 1725
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1657 GGAAGCCATTGCTAAAGCTGATGAGGCATCCAGACTACTCAGAAGGGAACAAGTTCAGCC 1716
Query 1726 TTTTAAAAGAGATGAAGATGAGAGTATGGTGTTGGCTGATGATGCTGAAGATCTTTACAA 1785
| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1717 TATTAAAACAGACGAAGATGAGAGTATGGTGTTGGCCGATGATGCTGAAGATCTTTACAA 1776
Query 1786 ATCGTTAGAGAAAGCTAGGAGGCTAGCTCTCATTAAGAAAGAGGAAGCTGGATCTGGTCC 1845
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATCGTTAGAGAAAGCTAGGAGGTTAGCTCTCATTAAGAAAGAGGAAGCTGGATCTGGTCC 1836
Query 1846 ACAGGCAGTTGCGCATCTTGTGGCTTCCAGCACCAATCAAACAACAGATGATAATACCAC 1905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1837 ACAGGCAGTTGCGCATCTTGTGGCTTCCAGCACCAATCAAACAACAGATGATAATAGCAC 1896
Query 1906 CACCGGGGATGAGACACAAGAAAATACAGTGGTTTTTACAGAGATGGGAGACTTTGTCTG 1965
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1897 CACCGGGGATGAGACACAAGAAAATACCGTGGTTTTTACAGAGATGGGAGACTTTGTCTG 1956
Query 1966 GGGTCTCCAGCGCGAGAACGATGTGCGGAAGCCTGAAAGTGAAGATGTTTTCATGGAAGA 2025
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1957 GGGTCTCCAGCGCGAGAAAGATGTGCAAAAGCCTGAAAGCGAAGATGTTTTCATGGAAGA 2016
Query 2026 AGATGTAGCACCCAAAGCTCCCGTTGAAGTAAAAGAAGAGCATCCTGATGGTTTGACAGA 2085
||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||
Sbjct 2017 AGATGTAGCACCCAAAGCTCCTGTTGAAGTAAAAGAAGAGCACCCCGATGGTTGGACAGA 2076
Query 2086 AGTAAATGACACTGATATGGATGCAGCAGAGGATTCATCAGATACCAAAGAGATAACACC 2145
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2077 AGTAAAAGACACTGATATGGATGCAGCAGAGGATTCATCAGACACCAAAGAGATAACTCC 2136
Query 2146 TGATGAAAATATACACGAGGTTGCGGTTGGAAAAGGATTATCTGGTGCATTGAAGCTTCT 2205
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2137 TGATGAAACTATACACGAGGTTGCTGTTGGAAAAGGATTATCTGGTGCATTGAAGCTTCT 2196
Query 2206 TAAAGACCGAGGAACCCTAAAGGAGAAGGTCGAATGGGGTGGTAGAAATATGGACaaaaa 2265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 TAAAGACCGAGGAACCCTAAAGGAGAAGGTCGAATGGGGTGGTAGAAATATGGACAAAAA 2256
Query 2266 aaaGAGCAAGCTTGTGGGTATTGTGGATGATGATGGAGGTAAAGAATCTAAGGATAAAGA 2325
||||||||||||||||||||||||||||||||| ||| | | | ||||||
Sbjct 2257 AAAGAGCAAGCTTGTGGGTATTGTGGATGATGA---AGG-A--G-------G--TAAAGA 2301
Query 2326 ATCTAAGGATAGATTCAAGGACATCCGGATTGAGAGGACTGACGAGTTTGGTAGAACTTT 2385
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2302 ATCTAAGGATAGATTCAAGGACATCCGGATTGAAAGGACTGACGAGTTTGGTAGAACTTT 2361
Query 2386 AACTCCAAAAGAAGCCTTTCGACTACTCTCGCACAAATTCCACGGGAAGGGGCCTGGAAA 2445
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 2362 AACTCCAAAAGAAGCCTTTCGATTACTCTCTCACAAATTCCACGGGAAGGGGCCTGGAAA 2421
Query 2446 AATGAAGGAAGAGAAACGGATGAAACAGTACCAGGAAGAGCTCAAGTTAAAGCAAATGAA 2505
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2422 AATGAAGGAAGAGAAACGTATGAAACAGTACCAGGAAGAGCTCAAGTTAAAGCAAATGAA 2481
Query 2506 AAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAA 2565
||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 2482 AAATTCAGACACACCATCTCAATCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAGTTGAA 2541
Query 2566 AACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGACAAACCAGTGATCCTCAGAG 2625
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2542 AACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGACAAACTAGTGATCCTCAGAG 2601
Query 2626 TGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGTGACAG 2685
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2602 TGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGGGACAA 2661
Query 2686 AAAGGTGGAGCATTTCTTGGGAATAAAGCGGAAATCAGAGCCCGGAAACTCGGATACACC 2745
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2662 AAAGGTGGAGCATTTCTTGGGAATAAAGCGGAAATCGGAGCCTGGAAACTCGGATACACC 2721
Query 2746 ACCAAAGAGACCAAAGCCTTGAAGGACACTTTT--A-G-ATAATCAAAAGGTCTTGCTTG 2801
||||||||||||||||||||||||||||||||| | | ||||||||||| |||| ||||
Sbjct 2722 ACCAAAGAGACCAAAGCCTTGAAGGACACTTTTCGATGGATAATCAAAAGCTCTTACTTG 2781
Query 2802 CGTCTTTGTTTCACATTGATTTGTCTCTGGTAAACTCTTTT-TCAGGATTTGTTAGTCTT 2860
||||||| || ||||||||| |||||||| ||||| |||| |||||||| |||||||||
Sbjct 2782 CGTCTTTCCTTGACATTGATTGGTCTCTGGGAAACT-TTTTCTCAGGATTAGTTAGTCTT 2840
Query 2861 TAGAAGAAGACATAGCTCGCTCATTATATAGATTCATGCTGCTGAGACTGATGATATTTT 2920
||||| |||||| ||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 2841 TAGAAAAAGACA--GCTCGATCAATATATAGATTCATGCTG---AGACTGATGATATTTT 2895
Query 2921 GATGAAGTTGCCAAAACCGGTATGGGTTTGGTTTCAGTTCTGTAATCAAA 2970
| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2896 GCTGAAGTTGCCAAAACCGGCATGGGTTTGGTTTCAGTTCTGTAATCAAA 2945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115603893575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5