BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16790.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941178 jgi|Araly1|941178|scaffold_601722.1 1177 0.0
> Ahg941178 jgi|Araly1|941178|scaffold_601722.1
Length=742
Score = 1177 bits (637), Expect = 0.0
Identities = 707/741 (95%), Gaps = 4/741 (1%)
Strand=Plus/Plus
Query 144 AGACTCTAGTAGTTAAGATGTCAGTGAGAGCTAGGAGGATTGTTTCGGGTAGATCAGAGA 203
||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 4 AGAGTCTAGTAGTTAAGATGTCAGTGAGAGCTAGGAGGATTGTTTCTGGTAGGTCAGAGA 63
Query 204 CTGTAGCAGCTAATTATGCTTTCGATCCGTTACATGATGACAAAATTATAAGAAATAGGC 263
||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 64 CTGTAGCAGCTAATTATGCGTTCGATCCGCTAAATGATGACAAAATTATAAGAAATAGGC 123
Query 264 TTCTCACACGCACGACCACCACCAGAGGCGAACCTCCATTGAAGAAGCTTCAGAAGAAAT 323
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 124 TTCTCACACGCACGACCACCACCAGAGGTGAACCTCCATTGAAGAAGCTTCAGAAGAAAT 183
Query 324 TCACTTCTTTTGTTATTGAACTAGACAAAGAAGAAGATAACTACAGTGAGTGTGGTAGGC 383
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TCACTTCTTTCGTTATCGAACTAGACAAAGAAGAAGATAACTACAGTGAGTGTGGTAGGC 243
Query 384 TCGCGAAAGCTTTCTTGCAAGAACTCTCTGCGTTTGAGATTCCGCTTCTTAAGAGCCAAG 443
|||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 244 TCGCCAAAGCTTTCTTGCAAGAACTTTCCGCTTTTGAGATTCCGCTTCTTAAGAGCCAAG 303
Query 444 TAGTTGTCGCTGCAAATCTTAGGGAGAAA-GAGAACTTTAACGAGCTT-AAAGATGAGAC 501
||||| ||||| ||||||||||| ||| |||||||| |||||| || ||||| |||||
Sbjct 304 CGGTTGTTGCTGCGAATCTTAGGGA-AAAGGAGAACTTCAACGAG-TTGAAAGACGAGAC 361
Query 502 GAATAGGCAGATAATGCAGGCACAAGCTGATATAGAAGATCTTAAGAAACAGCTTGAGGA 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 GAATAGGCAGATAATGCAGGCACAAGCTGATATAGAAGATCTTAAGAAACAGCTTGTGGA 421
Query 562 GAGTAAGATAGAGAGACAACAGAAAGAGGAGTGTGAAGCCATTAGGAAACTTATCTCTGC 621
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 422 GAGTAAGATAGAGAGACAACACAAAGAGGAGTGTGAAGCCATTAGGAAACTTATCTCTGC 481
Query 622 GCAGCCACCGAGGTCAGAGACGCAGAAGGTTATACATGAATTGAAGAAGGAGATTGCAGA 681
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCAGCCACCGAGGTCAGAGACACAGAAGGTTATACATGAATTGAAGAAGGAGATTGCAGA 541
Query 682 ACTCGAGGCTGAGAATACAGCAAGTTGGAGACTTCTTGAACTAAGGAAGAAGCAGTTTGC 741
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 542 ACTCGAGGCTGAGAATACAGCAAGTTGGAGACTTCTTGAGCTAAGGAAGAAGCAGTTTGC 601
Query 742 ATTGTTGTTGCATGTGGTGGATGAGTTGCAGGAGACAATGGAGGATGAACAGAAGAGTAT 801
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 602 ACTGCTGTTGCATGTGGTGGATGAGTTGCAGGAGACAATGGAGGATGAACAGAAGAATAT 661
Query 802 GGTGGAAGAAATGCAGAGGAACATTACCGCTGATGGCGCTGAAGCCATGTCCATCGATTA 861
|||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 662 GGTGGAAGAATTGCAGAGGAACATTACCGCCGATGGCGATGAAGCCATGTCCATCGATTA 721
Query 862 GCTCCTAATCTTAGCAACTTT 882
||||||||||||||| |||||
Sbjct 722 GCTCCTAATCTTAGCTACTTT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5