BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16800.3
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350793 jgi|Araly1|350793|fgenesh1_pg.C_scaffold_6001386 989 0.0
Ahg941181 jgi|Araly1|941181|scaffold_601725.1 171 2e-41
> Ahg350793 jgi|Araly1|350793|fgenesh1_pg.C_scaffold_6001386
Length=864
Score = 989 bits (535), Expect = 0.0
Identities = 575/595 (97%), Gaps = 0/595 (0%)
Strand=Plus/Plus
Query 295 ATGTCGCGTTTTCCCCGTGGATTTGTGGAGAATTCATCAATGGAGGAACCCAAAATCGCT 354
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCGTTTTCCCCGTGGATTCGTGGAGAATTCATCAATGGAGGAACCCAAAATCGCT 60
Query 355 CGTCGTCCAACTATTTGCTTCAGACCAATAAACCCTTCTGATTTAGAACGTTTGGAGCAA 414
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTCGTCCAACTATCTGCTTCCGGCCAATAAACCCTTCTGATTTAGAACGTTTGGAGCAA 120
Query 415 ATCCATCGTGACATATTCCCAATCAGGTATGAGTCTGAGTTTTTTCAGAATGTTGTCAAC 474
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCATCGCGACATATTCCCAATTAGGTATGAGTCTGAGTTTTTTCAGAATGTTGTCAAC 180
Query 475 GGAGGTGATATTGTCTCTTGGGCTGCTGTTGATCGGAGTCGCCCTGATGGTCATTCTGAG 534
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GGAGGTGATATCGTCTCTTGGGCTGCTATTGATCGGAGTCGCCCTGATGGTCATTCTGAG 240
Query 535 GAACTTATTGGATTTGTTACTGCCAAAATCGTACTTGCCAAAGAAAGCGAAATATCAGAT 594
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GAACTTATTGGATTTGTTACTGCCAAAATCGTGCTTGCCAAAGAAAGCGAAATATCAGAT 300
Query 595 CTAATAAGATATGACTCGTCGAAGGGAGAGGGGACATTGGTGTACATCCTAACACTTGGA 654
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 CTAATAAGATATGACTCGTCGAAGGGAGAGGAGACATTGGTGTACATCCTAACACTTGGA 360
Query 655 GTTGTAGAAACATACAGAAAACGTGGAATCGCTAAGGCACTTATTAACGAGGTCGTCAAA 714
||||||||||||||||||||||||||||| |||||| | |||||||| |||||||| |||
Sbjct 361 GTTGTAGAAACATACAGAAAACGTGGAATAGCTAAGTCGCTTATTAATGAGGTCGTGAAA 420
Query 715 TACTCTTCTGGTATCCCTGTGTGCCGTGGTGTTTACCTTCACGTGATTGCACACAACAAT 774
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TACACTTCTGGTATCCCTGTGTGCCGTGGTGTTTACCTTCATGTGATTGCACACAACAAT 480
Query 775 CCCGCAATCCGGTTGTACAAAAGAATGTCTTTCAGATGTGTAAGGAGGTTACACGGATTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCCGCAATCCGGTTGTACAAAAGAATGTCTTTCAGATGTGTAAGGAGGTTACACGGATTC 540
Query 835 TACTTAATCAACGGCCAGCATTTCGATTCTTACTTGTTCGTCTACTTTATCAACG 889
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TACTTAATCAACGGACAGCATTTCGATTCCTACTTGTTCGTCTACTTTATCAACG 595
Score = 370 bits (200), Expect = 2e-101
Identities = 218/227 (96%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 890 ATGGGGTTATCGCTGAATCATGGCTGCATTGCAGAGATCTTGCGGTGTTGGTTCTGAATT 949
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATGGGGTTATCGTTGAATCATGGCTGCATTGCAGAGATCTTGCGGTGTTGGTTCTGAATT 697
Query 950 ATATGAGGAGCGGAATCAAATCTTTCGCATCAAAGCTGACGGTGAACCACGATGAGAAAG 1009
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct 698 ATATGAGGAGCGGAATCAAATCAGTCGCATCAAAGCTGACGATGAACCACGAAGAGAAAG 757
Query 1010 GCTCGAAATGGCTTAAAAGCAAAGACAACACGCGGTGTCTCTTGCCCACTCAGACTAAAC 1069
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 758 GCTCGAAATGGCTTAAAAGCAAAGACAACACGCGATGTCTCTTGCCCACTCAGACCAAAC 817
Query 1070 GAAACCTTGCATCGGAAAGAGTATCATCCGGGTATGATTACGTATAG 1116
||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 818 GAAACCTTGCATCTGAAAGAGTATCATCCGGGTACGATTACGTATAG 864
> Ahg941181 jgi|Araly1|941181|scaffold_601725.1
Length=230
Score = 171 bits (92), Expect = 2e-41
Identities = 123/137 (90%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 1 GAAGCCATAACGATGTGTGGGGAAGACGGCAAAGCAATCAAGC-A--AA-TACTTTTCCT 56
||| ||||||||||||||||||||||||||||||||||||||| | || ||| | ||||
Sbjct 94 GAAACCATAACGATGTGTGGGGAAGACGGCAAAGCAATCAAGCAAGCAAGTACCTGTCCT 153
Query 57 TCCTCTTC-TTCTCCAAAAGTCGTTT-GTTTTCACATTTCTTTCGATTCCCACTTGACTC 114
| |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 154 TGCTCTTCTTTCTCCAAAAGTCGTTTCTTTTTGACATTTCTTTCGATTCCCACTTGACTC 213
Query 115 TCCGAGAAACCTTTGCA 131
| || ||||||||||||
Sbjct 214 TGCGTGAAACCTTTGCA 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5