BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16810.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488540 jgi|Araly1|488540|fgenesh2_kg.6__1674__AT5G16810.1 2193 0.0
> Ahg488540 jgi|Araly1|488540|fgenesh2_kg.6__1674__AT5G16810.1
Length=1392
Score = 2193 bits (1187), Expect = 0.0
Identities = 1327/1395 (95%), Gaps = 8/1395 (1%)
Strand=Plus/Plus
Query 13 AAGTAATTTGAAGTGAAGC--GACGAAACACAAACAAAAGCGATGAATCTGGTCGCTATT 70
||| ||||||||||||| | |||||| |||||||||||||||||||||||||||| ||
Sbjct 1 AAGGAATTTGAAGTGAAACAAAACGAAATACAAACAAAAGCGATGAATCTGGTCGCTGTT 60
Query 71 CATCGCGTTTCCTTCGAATGCGTTTCGCGTTTCTCTTTGAAACATAGAGAATCAGGCGAT 130
|||||||||||||| |||||| |||||||||||||||||| ||| |||||| ||||||
Sbjct 61 CATCGCGTTTCCTTGGAATGCATTTCGCGTTTCTCTTTGATCCATCGAGAATTAGGCGAG 120
Query 131 GGATTCTCCGGCT-GTCGGATTGTAAATTCGCGTGGACGGAATCGGCCGATTCGGCGGTT 189
|| || ||||| | |||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 121 GGGTTATCCGG-TCGTCGGATTGTGAATTCGCGTGGACGGAATCGGCCGATTCGGCGGCT 179
Query 190 GCATGCGGTGACAGCGAGTTTGATAACCAGTGCTGACTCGTTCGAGGTAGGGCGGCTTAT 249
|||||||||||| ||| |||||||||| || |||||||| ||||||||||||||||||||
Sbjct 180 GCATGCGGTGACGGCGGGTTTGATAACTAGCGCTGACTCCTTCGAGGTAGGGCGGCTTAT 239
Query 250 CGGAAGCTACGGATTCATGAATGTAACTAGTTATACAGGGCTGCAGTCAGGATCTGACTT 309
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 240 CGGAAGCTACGGATTCATGAATGTAACTAGTTATTCAGGGTTGCAGTCAGGATCTGACTT 299
Query 310 TGAATATACGTCTGATGATATTGGGCGATTAAAATCTCAAGATATTGGAGAAGGTGCCGT 369
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 TGAATATACTTCTGATGATATTGGGCGATTAAAATCTCAAGATATTGGAGAAGGTGGCGT 359
Query 370 TAAGATCAGACTATATCAAGGACGAATATCTCAGGGTCCATTTCGAGGAACGCCTGTCGT 429
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 360 TAAGATCAGACTATATGAAGGAAGAATATCTCAGGGTCCATTTCGAGGAACGCCTGTTGT 419
Query 430 CTTTAAGGTCTACCCCGGACAGCGTGCTGGTGGAGTTGAGGCTGACATGATGGCAGCAAA 489
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTTAAGGTCTATCCAGGACAGCGTGCTGGTGGAGTTGAGGCTGACATGATGGCAGCAAA 479
Query 490 CGAGCTTAATGCACACTCTTTTCTCCAGAGCAAAAGCCTGCCTGCTAATCTGCTTCTACT 549
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 480 CGAGCTTAATGCACACTCTTTTCTCCAGAGCAAAAGCCTGCCTGCTAATCTACTTATACT 539
Query 550 TGTTGGTGGCTTTGAGACACAACTTGGGGAACAGTGGCTGGCTTTTCGTGATGGTGGGAA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTTGGTGGCTTTGAGACACAACTTGGGGAACAGTGGCTGGCTTTTCGTGATGGTGGGAA 599
Query 610 AGATAGTGCAGCTGACTACGCGCAAACTGCGAGTGAAAAAACAACCAGAGCTCGCTCCCA 669
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 AGATAGTGCAGCTGACTACGCGCAAACTGCGAGTGAAAAAACATCCAGAGCTCGCTCCCA 659
Query 670 AGGAGTATGGAATCCTTATGAAAAAGAGCAGATGAT-AAAACGAAGGAGAAACTTTGTTA 728
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 660 AGGAGTATGGAATCCTTATGAAAAAGAGCAGATGATGAAAA-GAAGGAGAAACTTTGTCA 718
Query 729 TTAAGATCCTTCAGGGTGCAATGAAGGGTCTAGCCTTTATGCATGATAATGACAGGTTAC 788
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTAAGATCCTACAGGGTGCAATGAAGGGTCTAGCCTTTATGCATGATAATGACAGGTTAC 778
Query 789 ATCAAAGCCTCGGGCCATCCTCAATTGTTCTCAATACACCAGCGGAACGAGAAGCCATCT 848
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCAAAGCCTCGGGCCATCCTCAATTGTTCTCAATACACCAGCGGAACGAGAAGCCATCT 838
Query 849 ATTTAATACCGAGGCTGCGAGATCTAGCCTTTTCTGTTGACATAAGGCCTTCATGCTTGG 908
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTTAATACCGCGGCTGCGAGATCTAGCCTTTTCTGTTGACATAAGGCCTTCATGCTTGG 898
Query 909 AAGAAGGAGCCACTTCTGGTTCACTGTCAGAGCAACTTTGGCGAAGGGCAAATGCTGCTG 968
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 899 AAGAAGGAGCCACTTCTGGTTCACTTTCAGAGCAACTTTGGCGAAGGGCAACTGCTGCTG 958
Query 969 GTGCTTACACAGTTTTTGAGAAAAGAGCTTTTGGGATTGCAGATGACATATATGAAGCCG 1028
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 GTGCTTTCACAGTTTTTGAGAAAAGAGCTTTTGGGATTGCAGATGACATATATGAAGCTG 1018
Query 1029 GTCTTCTTTTTGCATACTTAGCATTTGTTCCATTCTGTGAAGCAGGCGTAACGGATTCTC 1088
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1019 GTCTTCTTTTTGCATACTTAGCCTTTGTTCCATTCTGTGAAGCAGGCGTAATGGATTCTC 1078
Query 1089 TTTCTCTTCAGAGGCTACTGGAAAACACTTTCCGGCTGGATATCGAGGCTGTAAGAGAGT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTTCTCTTCAGAGGCTACTGGAAAACACTTTCCGGCTGGATATCGAGGCTGTAAGAGAGT 1138
Query 1149 ACTGTTTAGCTGATGAACGCCTCGAAGAAGCGGTAAAGTTTCTGGATCTTGGTGATAGAG 1208
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 ACTGTTTGGCTGATGAACGCCTCGAAGAAGCTGTAAAGTTTCTGGATCTTGGTGATAGAG 1198
Query 1209 CTGGTTGGGAATTGCTCCAGGCAATGTTGAACGCTGACTATAGGAAGCGGCCAATGGCGG 1268
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 CTGGTTGGGAATTACTCCAGGCAATGTTGAACGCTGACCATAGGAAGCGGCCAATGGCGG 1258
Query 1269 AAGCTGTTCTTAGTCATCGATTTTTGAATGGCGTAGTTTAAATGAGAAGAGACGAAGATT 1328
|||||||||||||||| ||||||||||| ||||| |||||| |||||| ||| |||||||
Sbjct 1259 AAGCTGTTCTTAGTCACCGATTTTTGAACGGCGTTGTTTAATTGAGAATAGATGAAGATT 1318
Query 1329 ATGTATTTACGTAATTATCT-ACAACTATTAATCCTTGATCCATGTTCTGAACATATAAT 1387
||||| || |||| ||| | ||||||||||||||||||||||| ||||||| |||||||
Sbjct 1319 ATGTAATTCCGTATTTA-CGGACAACTATTAATCCTTGATCCATATTCTGAATATATAAT 1377
Query 1388 CATATATCGTGGGTT 1402
||||| |||||||||
Sbjct 1378 CATATCTCGTGGGTT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5