BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16820.1
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488541 jgi|Araly1|488541|fgenesh2_kg.6__1675__AT5G16820.1 2468 0.0
Ahg477545 jgi|Araly1|477545|fgenesh2_kg.3__246__AT3G02990.1 662 0.0
Ahg927794 jgi|Araly1|927794|scaffold_300251.1 237 2e-61
> Ahg488541 jgi|Araly1|488541|fgenesh2_kg.6__1675__AT5G16820.1
Length=1786
Score = 2468 bits (1336), Expect = 0.0
Identities = 1622/1756 (92%), Gaps = 35/1756 (2%)
Strand=Plus/Plus
Query 86 TTTGAGCTTGAGAAGAACAGAAGAAACTTCCAGGATCAATCAATCGATCAA-CTTTAGTG 144
|||||||| | ||||||| ||||||| || ||||||||||||| ||||||| |||| |||
Sbjct 57 TTTGAGCTCGCGAAGAACGGAAGAAATTTTCAGGATCAATCAACCGATCAAGCTTTGGTG 116
Query 145 AACTAACTCTTGATTTTTCATTCGAAGTTATGGAATCGGTTCCCGAATCCGTACCATCGC 204
|||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct 117 AACTAACTCTTGCTTTTTCATTCGTAGTTATGGAACCGGTTCCCGAATCCGTACCCTCGC 176
Query 205 CGAACTCGAATACACCGTCAATACCACCGCCGGTGAACTCCGTACCGCCTTTCTTGAGTA 264
||||||||| ||| | || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 177 CGAACTCGACTACGTCATCTATACCACCGCCGGTGAACTCCGTGCCGCCTTTCTTGAGCA 236
Query 265 AAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGTTTCGTGGAGCAGCGGGA 324
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 237 AAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGTGTCTTGGAGCAGCGGGA 296
Query 325 ACAACAGCTTCGTCGTCTGGAGTG-CCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTAT 383
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 297 ACAACAGCTTCGTCGTCTGGAGTGTCCCC-GAGTTCTCGAAGGTGCTCTTACCCAAGTAT 355
Query 384 TTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATGGTTTCAGAAAA 443
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTCAAGCACAACAATTTCTCCAGCTTCGTCAGACAGTTAAATACTTATGGTTTCAGAAAA 415
Query 444 GTTGATCCTGACCGATGGGAATTTGCAAATGAAGGATTTCTTAGAGGCCGAAAACAACTA 503
|||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 416 GTTGATCCAGATCGATGGGAATTTGCAAATGAGGGATTTCTTAGAGGCCAAAAACAACTA 475
Query 504 CTGAAGAGTATTGTCAGGAGAAAACCTTCGCATGTGCAGCAGAATCAGCAACAAACTCAA 563
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTCAAGAGTATTGTTAGGAGAAAACCTTCGCATGTGCAGCAGAATCAGCAACAAACTCAA 535
Query 564 GTTCAGAGCTCATCTGTTGGTGCTTGTGTCGAGGTGGGGAAGTTTGGAATAGAAGAAGAA 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTTCAGAGCTCATCTGTTGGTGCTTGTGTCGAGGTGGGGAAGTTTGGAATAGAAGAAGAA 595
Query 624 GTGGAAAGACTTAAGCGGGATAAGAATGTTCTTATGCAAGAACTCGTCAGGTTAAGGCAG 683
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTGGATAGACTTAAGCGGGATAAGAATGTTCTTATGCAAGAACTCGTCAGGTTAAGGCAG 655
Query 684 CAACAGCAAGCTACTGAAAACCAACTGCAGAATGTGGGACAGAAAGTTCAGGTGATGGAG 743
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAACAGCAAGCTACCGAAAACCAACTGCAGAATGTGGGACAGAAAGTTCAGGTGATGGAG 715
Query 744 CAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTA 803
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAGAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTA 775
Query 804 AACCAGTTAGTACAACAGAATAATAATGATGGCAACAGACAAATTCCAGGAAGCAACAAA 863
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 AACCAGTTAGTACAACAGAATAAT---GATGGCAACAGACAAATTCCAGGAAGCAACAAA 832
Query 864 AAGAGGAGACTTCCTGTAGATGAGCAGGAGAA-TCGTGGTGACAATGTGGCTAATGGTCT 922
||||||||||||||||| ||||| |||||||| | |||| ||| ||||||||||||||||
Sbjct 833 AAGAGGAGACTTCCTGTTGATGAACAGGAGAACT-GTGGGGACCATGTGGCTAATGGTCT 891
Query 923 TAACCGCCAGATTGTTAGATATCAGCCGTCGATAAACGAAGCAGCACAAAATATGCTTCG 982
|||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 892 TAACCGTCAGATTGTTAGATATCAGCCGTCGATAAACGAAGCAGCCCAAACTATGCTTAG 951
Query 983 ACAGTTCTTAAATACTAGTACCTCACCTCGGTATGAATCAGTTTCAAACAATCCTGACAG 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ACAGTTCTTAAATACTAGTACCTCACCTCGGTATGAATCAGTTTCAAACAATCCTGACAG 1011
Query 1043 TTTCCTATTGGGTGATGTTCCCAGTTCTACCTCTGTAGACAATGGGAACCCTTCAAGTAG 1102
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1012 TTTCCTATTGGGTGATGTTCCCAGTTCTAACTCTGTAGACAATGGGAACCTTTCAAATAG 1071
Query 1103 AGTTTCTGGAGTAACATTGGCCGAGTTTTCACCCAACACAGTTCAGTCAGCAACGAATCA 1162
|||||||||||||||| |||||||| ||||||||||| ||| ||| ||||||||||||||
Sbjct 1072 AGTTTCTGGAGTAACACTGGCCGAGGTTTCACCCAACGCAGCTCACTCAGCAACGAATCA 1131
Query 1163 AGTACCCGAAGCAAGTTTGGCTCATCATCCTCAAGCTGGTCTGGTTCAGCCAAATATAGG 1222
||||||||||||| |||||||||| |||||||||||| |||||||||| |||||| ||||
Sbjct 1132 AGTACCCGAAGCAGGTTTGGCTCAGCATCCTCAAGCTAGTCTGGTTCATCCAAATTTAGG 1191
Query 1223 TCAAAGTCCGGCTCAAGGAGCAGCACCTGCAGACTCTTGGAGCCCTGAATTTGATTTAGT 1282
|| ||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1192 TCCAAGTCCGTCTCAAGGAGTAGCACCTGCAGCCTCTTGGAGCCCTGAATCTGATTTAGT 1251
Query 1283 TGGATGCGAGACAGATAGTGGAGAGTGTTTTGATCCAATAATGGCTGTTTTAGATGAGTC 1342
|||||| ||||| | | |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1252 TGGATGTGAGACGGGCAATGGAGAGTGTTTCGATCCAATAATGGCTGTTTTAGATG---C 1308
Query 1343 AGAAGGCGATGCAATTTCTCCTGAAGGTGAGGGCAAGATGAATGAGTTACTGGAGGGAGT 1402
| | | || |||||||||| |||||| ||||| ||||||||||||| |||||
Sbjct 1309 A-A------T----TT-CTCCTGAAGGCGAGGGCGAGATGGATGAGTTACTGGATGGAGT 1356
Query 1403 CCCTAAGCTGCCCGGAATCCAAGATCCATTCTGGGAACAGTTCTTTTCTGTTGAACTCCC 1462
|||||||||||||||| |||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1357 CCCTAAGCTGCCCGGAGTCCAAGATCCATTCTGGGTACAGTTCTTTTCTGATGAAAGCCC 1416
Query 1463 AGCGATTGCAGATACAGACGATATTCTATCAGGATCAGTGGAGAATAATGACTTGGTATT 1522
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 1417 AGCGATGGCAGATACAGACGAGATTCTATCAGGATCAGTGGAGAATAATGACATGGTAAT 1476
Query 1523 GGAACAAGAACCAAACGAGTGGACCCGTAATGAACAACAAATGAAGTATCTTACTGAACA 1582
||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||
Sbjct 1477 GGAACAAGAACCAAACGAGTGGACCCGGAATCAACAACAAATGAATTATCTTTCTGAACA 1536
Query 1583 AATGGGACTGCTTTCCTCAGAAGCACAGAGGAAATAAAGATTTTCAGGGGAGGTTGCAAA 1642
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1537 AATGGGACTTCTTTCCTCAGAAGCACAGAGGAAATAAAGATTTTCAGGGGAAGTTGTGAA 1596
Query 1643 AGGAGATATGAAGGAACGAGGAATATATCAGATGGTGTGTATACCCTTTACATTTTTACT 1702
|||||||||||||||| ||||||||||| | || | || |||||||| |||||||||||
Sbjct 1597 AGGAGATATGAAGGAAGGAGGAATATATG-G-TG-T-TG-ATACCCTTCACATTTTTACT 1651
Query 1703 TAAATGaaaaaaaaaCAGAGA--GAAGAAACATAAAAGATTTACCACCAAGCTTGTGAAT 1760
|||| ||||||||| ||||| |||||||| |||||||||||| |||| ||||||||||
Sbjct 1652 TAAAAAAAAAAAAAAAAGAGATAGAAGAAACGTAAAAGATTTACTACCATGCTTGTGAAT 1711
Query 1761 AGTTAGTAGAGATCGGTTTTTGTGTTGTTTAT----ATTATACTTTTGTGTGAAAACGTT 1816
| ||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 1712 AAA-AGTAGAGATCGTTTTTTGTGTTGTTTCTTTCTATTATACTTTTGTGTGAAAACGTT 1770
Query 1817 CATCTTGTTCAATTAT 1832
| || |||||||||||
Sbjct 1771 CGTCGTGTTCAATTAT 1786
> Ahg477545 jgi|Araly1|477545|fgenesh2_kg.3__246__AT3G02990.1
Length=1584
Score = 662 bits (358), Expect = 0.0
Identities = 737/913 (81%), Gaps = 54/913 (6%)
Strand=Plus/Plus
Query 249 CCGCC-TTTCTTGAGTAAAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGT 307
||||| |||| |||| ||||||||||| |||||||| ||||| ||||| | || || ||
Sbjct 151 CCGCCTTTTC-TGAGCAAAACCTACGATATGGTTGACGATCCATTGACGGACGACGTGGT 209
Query 308 TTCGTGGAGCAGCGGGAACAACAGCTTCGTCGTCTGG-A-GTGCCCCGGAGTTCTCG-AA 364
|| ||||||||||| |||||||||||||| || ||| | ||| || |||||| || ||
Sbjct 210 GTCTTGGAGCAGCGGCAACAACAGCTTCGTGGTTTGGAACGTG--CCTGAGTTCGCGAAA 267
Query 365 -GGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAA 423
|| || | || |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 268 CAGT-TTC-TACCAAAGTATTTCAAGCACAACAATTTCTCCAGTTTCGTCAGACAGCTCA 325
Query 424 ATACTTATGGTTTCAGAAAAGTTGATCCTGACCGATGGGAATTTGCAAATGAAGGATTTC 483
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct 326 ATACTTATGGTTTCAGAAAAGTTGATCCAGACCGCTGGGAGTTTGCAAATGAGGGCTTT- 384
Query 484 TT-AGAGGCCGAAAACAACTACTGAAGAGTATTGTCAGGAGAAAACCTTCGCATGTGCAG 542
|| ||||||| ||||||| |||| |||||||||||| || ||||||||||||| ||||||
Sbjct 385 TTAAGAGGCCAAAAACAAATACTAAAGAGTATTGTCCGGCGAAAACCTTCGCAAGTGCAG 444
Query 543 CAGAAT-CAGCAACAAACTCAAGTTCAG-AGCTCATCTGTTGGTGCTTGTGTCGAGGTGG 600
| | || |||||| ||||||||||| | ||||||||| ||||| || || || ||||
Sbjct 445 C---CTCCA-CAACAACCTCAAGTTCAGCA-CTCATCTGTGGGTGCGTGCGTTGAAGTGG 499
Query 601 GGAAGTTTGGAATAGAAGAAGAAGTGGAAAGACTTAAGCGGGATAAGAATGTTCTTATGC 660
| || |||||| | |||||||| |||||||||||| || |||||||||| || |||||||
Sbjct 500 GCAAATTTGGACTCGAAGAAGAGGTGGAAAGACTTCAGAGGGATAAGAACGTCCTTATGC 559
Query 661 AAGAACTCGTCAGGTTAAGGCAGCAACAGCAAGCTACTGAAAACCAACTGCAGAATGTGG 720
| ||||| || ||||||||||||||||| |||| ||| ||| | || ||||| |||||||
Sbjct 560 AGGAACTTGTAAGGTTAAGGCAGCAACAACAAGTTACCGAACATCATCTGCAAAATGTGG 619
Query 721 GACAGAAAGTTCAGGTGATGGAGCAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGG 780
||||||||||||| ||||||||||| ||||| |||||||||||||| ||| |||||||||
Sbjct 620 GACAGAAAGTTCATGTGATGGAGCAGAGGCAGCAACAAATGATGTCCTTTCTAGCAAAGG 679
Query 781 CTGTTCAAAGTCCAGGTTTCTTAAACCAGTTAGTACAACAGAATAATAATGATGGCAA-C 839
|||||||||||||||||||||||||||| || | | ||| | | |||||| | ||| |
Sbjct 680 CTGTTCAAAGTCCAGGTTTCTTAAACCAATTT-TCC--CAGCAGAGTAATGACG-CAAAC 735
Query 840 -AGACAAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTAGATGAGCAGGA-GAAT- 896
| ||| ||| | | |||||||||||||||||| || ||||| || || ||| | ||||
Sbjct 736 CA-ACACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGACCAG-ATGAATT 793
Query 897 CGTGGT-GACAATGTGGCTAAT-GGTCTTAACCGCCAGATTGTTAGATATCAGCCGTCGA 954
| ||| | || || || | | ||||||| |||||||||||| ||||||||| | ||||
Sbjct 794 C-TGGCAGTCA-TGGGG-TCAGCGGTCTTAGCCGCCAGATTGTGAGATATCAGTCATCGA 850
Query 955 TAAACGAAGCAGCACAAA-A-TATGCTTCGACAGTT-CTTAA-ATACT-AGTACCTCACC 1009
| ||||| ||| ||||| | |||||| | |||| | | || | | | |||| |||||
Sbjct 851 TGAACGATGCA--ACAAACACTATGCTCCAACAGATAC--AACAGA-TGAGTAATTCACC 905
Query 1010 TCGGTATGAATCAGTTTCAAACAATCCTGACAG-TTTCCTATTGGGTGATGTTCCCAGTT 1068
| | ||||||| | |||| ||||| || ||| |||| | ||||| |||||||| | ||
Sbjct 906 TAGCCATGAATCTCTCTCAAGCAATCATGGCAGCTTTCTT-TTGGGCGATGTTCCAAATT 964
Query 1069 CTA-CCTCTGTAGACAATGGGAAC-CCTTCAAGTAGAGTT-TCTGGAGTAACATTGGCCG 1125
| | ||| | ||||||||||| | ||| ||| | || | |||||||| |||||||| |
Sbjct 965 CCAACCTTTC-AGACAATGGGAGCTCCT-CAAATGGA-TCATCTGGAGTTACATTGGCAG 1021
Query 1126 A-GTTTTCACCCA 1137
| |||| || |||
Sbjct 1022 ATGTTT-CATCCA 1033
> Ahg927794 jgi|Araly1|927794|scaffold_300251.1
Length=2215
Score = 237 bits (128), Expect = 2e-61
Identities = 334/428 (78%), Gaps = 35/428 (8%)
Strand=Plus/Plus
Query 726 AAAGTTCAGGTGATGGAGCAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTT 785
|||||||| ||||||||||| ||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1326 AAAGTTCATGTGATGGAGCAGAGGCAGCAACAAATGATGTCCTTTCTAGCAAAGGCTGTT 1385
Query 786 CAAAGTCCAGGTTTCTTAAACCAGTTAGTACAACAGAATAATAATGATGGCAA-C-AGAC 843
||||||||||||||||||||||| || | | ||| | | |||||| | ||| | | ||
Sbjct 1386 CAAAGTCCAGGTTTCTTAAACCAATTT-TCC--CAGCAGAGTAATGAAG-CAAACCA-AC 1440
Query 844 AAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTAGATGAGCAGGA-GAAT-CGTGG 901
| ||| | | |||||||||||||||||| || ||||| || |||||| | |||| | |||
Sbjct 1441 ACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGAGCAG-ATGAATTC-TGG 1498
Query 902 T-GACAATGTGGCTAA-TGGTCTTAACCGCCAGATTGTTAGATATCAGCCGTCGATAAAC 959
| || || || | | |||||||| |||||||||||| ||||||||| | ||||| |||
Sbjct 1499 CAGTCA-TGGGG-TCAGTGGTCTTAGCCGCCAGATTGTGAGATATCAGTCATCGATGAAC 1556
Query 960 GAAGCAGCACAAA-A-TATGCTTCGACAGTT-CTTAA-ATACT-AGTACCTCACCTCGGT 1014
|| ||| ||||| | |||||| | |||| | | || | | | |||| |||||| |
Sbjct 1557 GATGCA--ACAAACACTATGCTCCAACAGATAC--AACAGA-TGAGTAATTCACCTAGCC 1611
Query 1015 ATGAATCAGTTTCAAACAATCCTGACAG-TTTCCTATTGGGTGATGTTCCCAGTTCTA-C 1072
||||||| | |||| ||||| || ||| |||| | ||||| |||||||| | ||| | |
Sbjct 1612 ATGAATCTCTCTCAAGCAATCATGGCAGCTTTCTT-TTGGGCGATGTTCCAAATTCCAAC 1670
Query 1073 CTCTGTAGACAATGGGAAC-CCTTCAAGTAGAGTT-TCTGGAGTAACATTGGCCGA-GTT 1129
|| | ||||||||||| | ||| ||| | || | |||||||| |||||||| || |||
Sbjct 1671 CTTTC-AGACAATGGGAGCTCCT-CAAATGGA-TCATCTGGAGTTACATTGGCAGATGTT 1727
Query 1130 TTCACCCA 1137
| || |||
Sbjct 1728 T-CATCCA 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5