BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16830.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488543 jgi|Araly1|488543|fgenesh2_kg.6__1677__AT5G16830.1 1546 0.0
> Ahg488543 jgi|Araly1|488543|fgenesh2_kg.6__1677__AT5G16830.1
Length=1118
Score = 1546 bits (837), Expect = 0.0
Identities = 1031/1122 (92%), Gaps = 24/1122 (2%)
Strand=Plus/Plus
Query 1 AAAACTTATAATTCACCTAACTCATTTCCATCATCTTCGTCTTCGTTTGTTCCCCTgaga 60
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAACTTATAATTTACCTAACTCATTTCCATCATCTTCGTCTTTGTTTGTTCCCCTGAGA 60
Query 61 tag--agataag-agaatttcgagagattcgagagaagagaCGATGAGTTTCCAAGATCT 117
|| |||| || ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GAGAAAGATCAGAAGATTTTCGAGAGATTGGAGAGAAGAGACGATGAGTTTCCAAGATCT 120
Query 118 CGAAGCTGGTACTCGATCTCCGGCGCCGAATCGTTTTACCGGTGGGAGACAACAGAGACC 177
||||||||||||||||| || | | |||||||||||| |||| |||||||||||||||||
Sbjct 121 CGAAGCTGGTACTCGATTTCAGACTCCGAATCGTTTTGCCGGCGGGAGACAACAGAGACC 180
Query 178 TTCGTCTCGTGGGGATCCATCTCAGGAGGTCGCCGCCGGGATTTTCAGGATCAGCACGGC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GTCGTCTCGTGGGGATCCATCTCAGGAGGTCGCCGCCGGGATTTTCAGGATCAGCACAGC 240
Query 238 TGTCAATTCCTTCTTCCGCCTCGTTAATTCGATCGGAACACCTAAAGATACTCTTGAATT 297
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TGTCAATTCCTTCTTCCGCCTCGTTAATTCGATCGGAACGCCTAAAGATACTCTTGAATT 300
Query 298 ACGAGATAAGCTGCAAAAGACAAGGTTACAGATATCCGAATTGGTGAAGAATACTTCAGC 357
||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 301 GCGAGAGAAGCTGCAAAAGACAAGGTTACAAATATCAGAATTGGTGAAAAATACTTCAGC 360
Query 358 TAAACTTAAGGAAGCTAGCGAAGCCGACCTTCATGGATCAGCTAGTCAAATTAAGAAGAT 417
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 361 CAAACTTAAGGAAGCTAGCGAAGCCGATCTTCATGGAGAAGCTAGTCCAATTAAGAAGAT 420
Query 418 AGCTGATGCTAAACTGGCAAAAGATTTCCAATCAGTTCTCAAAGAGTTTCAGAAAGCTCA 477
|| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 421 TGCGGATGCTAAACTGGCAAAAGATTTCCAATCAGTACTCAAAGAGTTCCAGAAAGCTCA 480
Query 478 GAGACTTGCAGCTGAAAGAGAAATAACATATACTCCTGTGGTCACAAAAGAAATACCTAC 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GAGACTTGCAGCTGAAAGAGAAATAACATATACTCCTGTGGTCACAAAAGGAATACCTAC 540
Query 538 CAGTTATAATGCACCTGAACTGGATAC---TGAATCTTTAAGGATCTCCCAGCAGCAAGC 594
||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |
Sbjct 541 CAGTTATAATGCACCGGAACTGGATACTGATGAATCTTTAAGGACCTCCCAGGAGCAAAC 600
Query 595 TCTTCTTCTACAATCAAGAAGGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTCTTCTACAATCAAGAAGGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAA 660
Query 655 TGAAGCAATTATTGAGGAAAGAGAGCAAGGGATTCGAGAAATTGAAGACCAGATTCGTG- 713
|||||||||||| ||||||||||||||||| ||| ||||| || |||| |||||| |||
Sbjct 661 TGAAGCAATTATCGAGGAAAGAGAGCAAGGAATTAGAGAAGTTCAAGAACAGATTAGTGG 720
Query 714 ATGTGAATGGCATGTTCAAAGATCTAGCTCTTATGGTGAACCATCAAGGAAATATTGTCG 773
| ||||||| |||||||||||||||||| | | |||||||||||||||| ||||||||
Sbjct 721 A-GTGAATGAAATGTTCAAAGATCTAGCTGGTCTAGTGAACCATCAAGGAATTATTGTCG 779
Query 774 ATGACATCAGCTCTAACCTTGACAACTCACATGCTGCAACTACACAAGCCACTGTTCAAC 833
||||||||| || |||| |||| ||| ||||||||||||||||| ||||||||| |||||
Sbjct 780 ATGACATCAACTATAACATTGATAACGCACATGCTGCAACTACAAAAGCCACTGCTCAAC 839
Query 834 TCAGAAAAGCAGCTAAAACTCAAAGATCAAACTCCTCTTTGACATGCCTACTTATTCTCA 893
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 840 TCAGAAAAGCAGCTAAAACGCAAAGATCAAACTCCTCTTTGACATGTCTACTTATTCTCA 899
Query 894 TTTTTGGGATTGTTCTACTCATTGTCATCATCGTTGTCTTGGTCTAA-GCATCAAACAT- 951
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 900 TTTTTGGGATTGTTCTGCTCATTGTCATCATCGTTGTCTTGGTCTAAAGCATCAAGCATC 959
Query 952 ATAACTCCAAGCTTCAATCTTCAAGCATCAAGCGAA-------TCTATGGAAACTATACA 1004
| |||||||||||| |||||||||||| |||||||| |||||| ||||||||||
Sbjct 960 A-AACTCCAAGCTT-AATCTTCAAGCAGCAAGCGAAGGACAAATCTATG-AAACTATACA 1016
Query 1005 AAGACCCATTAAAGATATATATCTAATGTACAGATTCTTTATA----CTCCATCTTCCCC 1060
|||| | |||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1017 AAGAGCAATTAAAGATAAATATCTATTGTACAGATTCTTTATATATACTCCATCTTCCCC 1076
Query 1061 ATTCAACCAAATTGATCTTAACTTCTCATCGTGTGAATGTTT 1102
|||||| | |||||||||||||| ||||||||||||||||||
Sbjct 1077 ATTCAATCGAATTGATCTTAACTACTCATCGTGTGAATGTTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5