BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16870.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488549 jgi|Araly1|488549|fgenesh2_kg.6__1683__AT5G16870.1 1144 0.0
Ahg477548 jgi|Araly1|477548|fgenesh2_kg.3__249__AT3G03010.1 416 1e-115
> Ahg488549 jgi|Araly1|488549|fgenesh2_kg.6__1683__AT5G16870.1
Length=732
Score = 1144 bits (619), Expect = 0.0
Identities = 698/735 (95%), Gaps = 9/735 (1%)
Strand=Plus/Plus
Query 1 ATCATCGGAGCCGTTTCTCTCTCTC--GAACTCGATTTAAGTATTTGAATCTTGCC-AAT 57
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 1 ATCATCAGAGCCGTTTCTCTCTCTCTGGAACTCGATTTAAGTATTTGAGTCTTGCCAAAT 60
Query 58 GGATTTGACGTGGTTAAGTGCCCTAATTGTTGGAGCTGCACTTGGATACTGCATTGGCAC 117
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GGATTTGACGTGGTTAAGTGCCCTAATTGTTGGAGCTGCACTTGGATTCTGCATTGGCAC 120
Query 118 TCGCCGTTCCAAACCTGTTGTTGCTGCTGTTGATAAGGATATC-AAAACTCAATCCTCCA 176
|||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||
Sbjct 121 TCGCCGTTCCAAACCTGTTGTTGCTGCTGTTGATGGGGATACCAAAAAC-CAATCCTCCA 179
Query 177 AAAGTCCACTCGAGATTGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGG 236
| |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGGTCCTCTCGAAATCGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGG 239
Query 237 TGGTGAGAAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAA 296
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGTGAGGAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAA 299
Query 297 CTTTAGGATTATACAAGAAGCTTGTTCGTCGAGCGCCAAAAGCATTGGACTGCTGGGAGG 356
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 CTTTAGGTTTATACAAAAAGCTTGTTCGTCGAGCACCAAAAGCATTGGACTGCTGGGAGG 359
Query 357 AATGTGCACAGCCAAAAGTTGTTGTGAAAATCGAGGACGAGGACGAGATGCTAGAATTGC 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 AATGTGCACAGCCAAAAGTTGTTGTCAAAATCGAGGACGAGGACGAGATGCTAGAATTGC 419
Query 417 AAGAAAGAGCTAAATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACAC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 AAGAAAGAGCTAAATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACCC 479
Query 477 AGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGAAGTTGTTGATG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGAAGTTGTTGATG 539
Query 537 AAGTAACAGGTGGACTAAAGCTTCTTTAGCAGATTCGAATTTCGATATGACATTTCTTCA 596
||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||
Sbjct 540 AAGTAACAGGTGGACTAAAGCTTCTTTAGAAGCTTCGTATTTCGATATGACATATCTTCA 599
Query 597 ACCTGATCTCTCAGATGGACCAAGCAGAAAGGAGAGACATGAACTCCACCTTCTCTG-TT 655
|||||||||||||||| |||||||||||| |||||| ||||||||||||||| |||| ||
Sbjct 600 ACCTGATCTCTCAGATAGACCAAGCAGAAGGGAGAGGCATGAACTCCACCTTTTCTGGTT 659
Query 656 CGCCCGAGG-TTACCTGTGAGAAATCTGTAGTTGTTACGTATACTCGTTCCTGATGATGA 714
|||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 -GCCC-AGGGTTACCTGTGAGAAATCTGTAGTTGTTACGTTTACTCGTTCCTGATGATGA 717
Query 715 CGAAATATTCATTTT 729
|||||||| ||||||
Sbjct 718 CGAAATATCCATTTT 732
> Ahg477548 jgi|Araly1|477548|fgenesh2_kg.3__249__AT3G03010.1
Length=921
Score = 416 bits (225), Expect = 1e-115
Identities = 328/378 (87%), Gaps = 6/378 (2%)
Strand=Plus/Plus
Query 185 CTCGAGATTGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGGTGGTGAGA 244
|||||||| ||||||||||||||| ||| | | ||||||| ||||||||||| |||||
Sbjct 284 CTCGAGATAGAGAAACTCGCTGATCTTCGCAAAAATTTCAAAATGGTTTTGGTTGTGAGG 343
Query 245 AATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGA 304
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 344 AATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGT 403
Query 305 TTATACAAGAAGCTTGTTCGTCGAGCGCCAAAAGCATTGGACTGCTGGGAGGAATGTGCA 364
||||||||||| || ||| || ||||||| ||| ||| || | ||||| | |||||
Sbjct 404 TTATACAAGAAACTCCTTCAACGGGCGCCAAGAGCCTTGAACAGATGGGAATATTGTGCT 463
Query 365 CAGCCAAAAGTTGTTGTGAAAATCGAG-GACGAGGACGAGATGCTAGAATTGCAAGAAAG 423
||||||||||||||||| |||||||| | ||||| |||||||||| |||||||||||
Sbjct 464 CAGCCAAAAGTTGTTGTCAAAATCGAAAGT-GAGGAAGAGATGCTAGTTTTGCAAGAAAG 522
Query 424 AGCTAA-ATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACACAGATTG 482
||| || | ||||||||||||| |||||||||||||||||||| |||| ||||||||| |
Sbjct 523 AGCAAAGA-CCCTTAAACTGCCAACCCATATCACCATTGATGCCGGAAAAACACAGATCG 581
Query 483 CCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGA-AGTTGTTGATGAAGTA 541
| ||||||||||| || || ||||||||||||||||| || || | | ||||||||||||
Sbjct 582 CTCCAAATTCAAGAACAGTAATGGCTATTCTTGGACCGGTTGATAAT-GTTGATGAAGTA 640
Query 542 ACAGGTGGACTAAAGCTT 559
||||||||||||||||||
Sbjct 641 ACAGGTGGACTAAAGCTT 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5