BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16880.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488550 jgi|Araly1|488550|fgenesh2_kg.6__1684__AT5G16880.1 2364 0.0
Ahg927799 jgi|Araly1|927799|scaffold_300256.1 1016 0.0
> Ahg488550 jgi|Araly1|488550|fgenesh2_kg.6__1684__AT5G16880.1
Length=1588
Score = 2364 bits (1280), Expect = 0.0
Identities = 1495/1598 (94%), Gaps = 18/1598 (1%)
Strand=Plus/Plus
Query 1 GAAGGGAAACATAGTCAGGATAAAGTAATTCCCACGACCAAACACTTAAAAAAGGAACGC 60
||||||| |||||||| ||||||||| |||||| || ||||||||||||||||| |||||
Sbjct 1 GAAGGGAGACATAGTCGGGATAAAGTTATTCCCGCGGCCAAACACTTAAAAAAGAAACGC 60
Query 61 AGTTTTCTTCTTCTTCAGGATTTGTACGGCGTCAACGGG-CATTGACCTTGTCGCAGATT 119
|||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 61 AGTTTTATTCTGCTTCAGAATTTGTACGGCGTCAACGGGCCATTGACCTTGTCGCAGGTT 120
Query 120 TTCCTCTCTAGTCTCCGTCTTCTATT-ACCAGATCGAGCTTTGTTCTTCGAGCTTCTCAT 178
|||||||||||||||| | || | || |||||||||||||||||||||||||||||||||
Sbjct 121 TTCCTCTCTAGTCTCC-T-TTAT-TTCACCAGATCGAGCTTTGTTCTTCGAGCTTCTCAT 177
Query 179 CTCTTTGTTCAATCTCAAAGGTTCTTGCTGTTTTTCATTTACAGGTTTTTGAGTATCAGC 238
|||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 178 CTCTTTGTTCAATCTCAAAGGTACTTGCTGTGTTTCATTTACAGG--TTTGAGTATCAGC 235
Query 239 AAAGATGGGTGACAATCTTATGGACAAAGTTACCGCATTTGGTGAGCGCCTGAAGATCGG 298
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 236 AAAGATGAGTGACAATCTGATGGACAAAGTTACCGCATTTGGTGAGCGCCTGAAGATTGG 295
Query 299 AGGTTCGGAAGTGAGCAACAAGATCAGTGCTGGTGTGAGCTCAATGAGCTTTAAAGTGAA 358
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 296 TGGTTCAGAAGTGAGCAACAAGATCAGTGCTGGTGTGAGCTCAATGAGCTTCAAAGTGAA 355
Query 359 GGAACTTTTTCAAGGTCCAAACCCAACTGATAAAATAGTCGAAGATGCTACTACTGAGAA 418
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 356 GGAACTTTTTCAAGGTCCAAACCCTACTGATAAAATAGTCGAGGATGCTACTACGGAGAA 415
Query 419 TCTAGAGGAACCTGACTGGGATATGAATTTGGAAATTTGTGATATGATAAATCAAGAGAC 478
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 TCTAGAAGAACCTGACTGGGATATGAATTTGGAAATATGTGATATGATAAATCAAGAGAC 475
Query 479 AATTAATAGCGTTGAGTTGATCCGTGGTATAAAGAAGAGGATTATGATGAAGCAGCCGAG 538
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 476 AATTAATAGCGTTGAGTTGATCCGTGGGATAAAGAAGAGGATAATGATGAAGCAGCCGAG 535
Query 539 GATTCAGTACCTTGCCTTGGTTTTGCTCGAGACGTGTGTTAAGAACTGTGAGAAGGCGTT 598
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 536 AATTCAGTACCTTGCCTTGGTGTTGCTCGAGACGTGTGTTAAGAACTGTGAGAAGGCATT 595
Query 599 TTCAGAGGTGGCAGCAGAGAGAGTCCTTGATGAAATGGTAAAGCTGATTGATGATCCACA 658
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTCAGAAGTGGCAGCTGAAAGAGTCCTTGATGAAATGGTAAAGCTGATTGATGATCCACA 655
Query 659 AACAGTTGTTAATAACCGAAACAAAGCTTTGATGCTGATTGAAGCTTGGGGAGAATCAAC 718
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 656 AACAGTTGTGAATAATCGAAACAAGGCTTTGATGCTGATTGAAGCTTGGGGAGAATCCAC 715
Query 719 CAGTGAACTTCGCTACCTACCAGTTTTCGAAGAAACTTATAAGAGCTTAAAAGCAAGAGG 778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAGTGAACTCCGCTACCTACCAGTTTTCGAAGAAACTTATAAGAGCTTAAAAGCAAGAGG 775
Query 779 TATTCGCTTCCCTGGACGAGACAACGAAAGCTTGGCACCTATTTTCACTCCTGCTCGGTC 838
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 776 TATTCGCTTCCCTGGACGAGACAACGAGAGCTTGGCACCTATTTTCACTCCTGCTCGATC 835
Query 839 AACTCCAGCACCAGAACTGAATGCTGATCTTCCTCAGCATGTGCATGAACCTGCACATAT 898
|||||||||||||||| | ||||||||| ||||||||||||||||||| || ||||||||
Sbjct 836 AACTCCAGCACCAGAAGTAAATGCTGATATTCCTCAGCATGTGCATGAGCCCGCACATAT 895
Query 899 CCAGTATGATG-TGCCTGTAAGAAGCTTTACTGCTGAGCAGACAAAGGAAGCTTTTGATA 957
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 896 TCAGTATGATGCT-CCTGTAAGAAGCTTTACCGCTGAGCAGACAAAGGAAGCTTTCGATA 954
Query 958 TAGCAAGAAACAGCATTGAACTTCTTTCCACGGTTCTGTCCTCCTCGCCTCAACATGATG 1017
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 955 TAGCAAGAAACAGCATTGAACTTCTTTCCACGGTTCTGTCCTCCTCACCTCAACATGATG 1014
Query 1018 CTTTACAGGATGACTTAACAACGACACTTGTACAACAATGTCGTCAATCTCAAACCACTG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CTTTACAGGATGACTTAACAACGACACTTGTACAACAATGTCGTCAATCTCAAACCACTG 1074
Query 1078 TCCAAAGAATCATTGAAACAGCAGGTGAAAACGAAGCCCTTCT-TTTCGAAGCCTTGAAT 1136
||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1075 TCCAAAGAATCATCGAAACAGCAGGTGAAAACGAAGCACTTCTATTT-GAAGCCTTGAAT 1133
Query 1137 GTGAACGACGAGCTAGTGAAAACGCTGTCTAAGTATGAGGAGATGAACAAACCCTCTGCA 1196
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1134 GTGAACGACGAGCTAGTGAAAACGCTGTCCAAGTATGAAGATATGAACAAACCCTCTGCA 1193
Query 1197 CCGCTAACCTCACATGAACCAGCCATGATTCCCGTTGCTGAAGAGCCCGATGACTCTCCA 1256
||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1194 CCGCTAACCACACATGAGCCAGCCATGATTCCTGTTGCTGAAGAGCCTGATGACTCTCCG 1253
Query 1257 ATTCATGGAAGAGAAGAATCTCTGGTTAGAAAATCTTCTGGTGTTCGAGGTGGATTCCAT 1316
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GTTCATGGAAAAGAAGAATCTCTGGTTAGAAAATCTTCTGGTGTTCGAGGTGGATTCCAT 1313
Query 1317 GGAGGGGGTGGTAGTGGAGATGACATGATGGATGATCTTGATGAGATGATATTCGGTAAG 1376
||||| ||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GGAGGAGGTAGT-G-GG-GATGACATGATGGATGATCTTGATGAGATGATATTCGGTAAG 1370
Query 1377 AAAAACGGCTGTGATTCTTCGACTAATCCAGATCATGACCCAAAAAAGGAGCAGTCCTCA 1436
|||| |||| ||| ||||||||||||| | ||||||||| |||||||||||||| ||
Sbjct 1371 AAAAGCGGCGGTGGTTCTTCGACTAATACTGATCATGACTTGAAAAAGGAGCAGTCTTCG 1430
Query 1437 TCCAAAAACGACGATCTCATTCGATTCTGAGACGGATACTTTCAGGCGACATAATAAATC 1496
||||||||||||||||||||||||||||||||| | | ||||| || | ||||||| ||
Sbjct 1431 TCCAAAAACGACGATCTCATTCGATTCTGAGACTGTTTTTTTCAAGCAAAATAATAACTC 1490
Query 1497 TTTTA-TA-ATGTATTTGGTGTTTAATTGGTAGTATGAATGAACAGGTTC--AATGTAAG 1552
||||| | ||| |||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1491 TTTTAATGGATGGATTTGGTGTTTATTTGGTAGTATGAATGAACAGATTCTCAATGTAAG 1550
Query 1553 TAATCTGTGTTTGGAGATCTCTTTGACTTGTGTGATGG 1590
||||||||||||||||||||||| ||||||||||||||
Sbjct 1551 TAATCTGTGTTTGGAGATCTCTTCGACTTGTGTGATGG 1588
> Ahg927799 jgi|Araly1|927799|scaffold_300256.1
Length=1292
Score = 1016 bits (550), Expect = 0.0
Identities = 972/1171 (83%), Gaps = 47/1171 (4%)
Strand=Plus/Plus
Query 240 AAGATGGGTGACAATCTT-ATGGACAAAGTTACCGCATTTGGTGAGCGCCTGAAGATCGG 298
|||||| |||||||| || ||||||||||||| | | ||| ||||||| || ||||| ||
Sbjct 18 AAGATGAGTGACAAT-TTAATGGACAAAGTTAGCTCCTTTAGTGAGCGTCTCAAGATTGG 76
Query 299 AGGTTCGGAAGTGAGCAA-CAAGATCAGTGCTGGTGTGAGCTCAATGAGCTTT-AAAGTG 356
||||| || |||||||| ||| | | ||||||||||||||| ||||| ||| ||||||
Sbjct 77 TGGTTCTGAGGTGAGCAAGAAAG-TGACTGCTGGTGTGAGCTCTATGAG-TTTCAAAGTG 134
Query 357 AAGGAACTTTTTCAAGGTCCAAACCCAACTGATAAAATAGTCGAAGATGCTACTACTGAG 416
||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| |||||
Sbjct 135 AAGGAACTTTTCCAAGGTCCTAACCCAACTGATAAACTAGTCGAGGATGCTACTTCTGAG 194
Query 417 AATCTAGAGGAACCTGACTGGGATATGAATTTGGAAATTTGTGATATGATAAATCAAGAG 476
||||||||| ||||||| |||| |||||| |||||||| || |||||||| || || |||
Sbjct 195 AATCTAGAGCAACCTGATTGGGCTATGAACTTGGAAATATGCGATATGATCAACCAGGAG 254
Query 477 ACA-ATTAATAGCGTTGAGTTGATCCGTGGTATAAAGAAGAGGATTATGATGAAGCAGCC 535
| | || | ||||||||| |||||||| || ||||||||||||||||||||||| |||||
Sbjct 255 A-AGATCATTAGCGTTGATTTGATCCGCGGGATAAAGAAGAGGATTATGATGAAACAGCC 313
Query 536 GAGGATTCAGTACCTTGCCTTGGTTTTGCTCGAGACGTGTGTTAAGAACTGTGAGAAGGC 595
||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 314 GAGGATTCAGTACCTTGCCTTGGTTTTACTTGAGACTTGTGTTAAGAATTGTGAGAAAGC 373
Query 596 GTTTTCAGAGGTGGCAGCAGAGAGAGTCCTTGATGAAATGGTAAAGCTGATTGATGATCC 655
|| || ||| | || || || ||||| || ||||||||||| |||||||||||||||||
Sbjct 374 CTTCTCTGAGATTGCTGCTGAAAGAGTTCTCGATGAAATGGTTAAGCTGATTGATGATCC 433
Query 656 ACAAACAGTTGTTAATAACCGAAACAAAGCTTTGATGCTGATTGAAGCTTGGGGAGAATC 715
|||||| ||||| ||||| || || ||||||||||| ||||||||||||||||| |||||
Sbjct 434 ACAAACCGTTGTCAATAATCGGAATAAAGCTTTGATACTGATTGAAGCTTGGGGGGAATC 493
Query 716 AACCAGTGAACTTCGCTACCTACCAGTTTTCGAAGAAACTTATAAGAGCTTAAAAGCAAG 775
|||||||||||| || ||| |||||||||||||||||||||| |||||| ||||| ||||
Sbjct 494 AACCAGTGAACTCCGTTACTTACCAGTTTTCGAAGAAACTTACAAGAGCCTAAAATCAAG 553
Query 776 AGGTATTCGCTTCCCTGGACGAGACAACGAAAGCTTGGCACCTATTTTCACTCCTGCTCG 835
|||||| |||||||||||||| |||||||| ||||| || ||||||||||| ||| || |
Sbjct 554 AGGTATCCGCTTCCCTGGACGTGACAACGAGAGCTTAGCGCCTATTTTCACCCCTCCTAG 613
Query 836 GTCAACTCCAGCACCAGAACT-GA-ATGCTGATCTTCCTCAGCATGTGCAT-GAACCTGC 892
||| || || ||||||| | || | ||| |||| |||||||||| || || | |||
Sbjct 614 GTCTTCTTCAATACCAGAAGTTGACA--CTGGTCTTGCTCAGCATGT-CAACGAGCATGC 670
Query 893 ACATATCCAGTATGATG-TGC-C-TGTAAGAAGCTTTACTGCTGAGCAGACAAAGGAAGC 949
|||| | ||||| ||| | | | ||| |||| ||||||||| ||| |||||||||||||
Sbjct 671 ACATGTGCAGTACAATGCTCCTCCTGTTAGAACCTTTACTGCGGAGGAGACAAAGGAAGC 730
Query 950 TTTTGATATAGCAAGAAACAGCATTGAACTTCTTTCCACGGTTCTGTCCTCCTCGCCTCA 1009
||||||| | ||||| |||||||||||||||||| | || ||| |||| || || |||||
Sbjct 731 TTTTGATGTTGCAAGGAACAGCATTGAACTTCTTACTACAGTTTTGTCATCTTCACCTCA 790
Query 1010 ACATGATGCTTTACAGGATGACTTAACAACG-ACACTTGTACAACAATGTCGTCAATCTC 1068
|| || | |||||| |||||||| ||| || |||||||||||||||||||| ||||| |
Sbjct 791 TCAGGACGTTTTACATGATGACTTGACA-CGTACACTTGTACAACAATGTCGCCAATCCC 849
Query 1069 AAACCACTGTCCAAAGAATCATTGAAACA-GCAGGTGAAAACGAAGCCCTTCTT-TTCGA 1126
||||||| |||||||||||||| || ||| | || ||| ||||||||||| || |||||
Sbjct 850 AAACCACAGTCCAAAGAATCATAGAGACATGT-GGAGAAGACGAAGCCCTT-TTATTCGA 907
Query 1127 AGCCTTGAATGTGAACGACGAGCTAGTGAAAACGCTGTCTAAGTATGAGGAGATGAACAA 1186
||| |||||||| |||||||||||||||||||||||||| || ||||| ||| |||| ||
Sbjct 908 AGCATTGAATGTAAACGACGAGCTAGTGAAAACGCTGTCAAAATATGAAGAGTTGAAGAA 967
Query 1187 ACCCTCTGCACCGCTAACCT-CAC-ATGAACCAGCCATGATTCCCGTTGCTGAA-GAGCC 1243
||| |||||||| || | ||| | || |||||||||||||| |||||| | || |
Sbjct 968 ACCGTCTGCACCATTAGT-TGCACCA-GAGCCAGCCATGATTCCTGTTGCT-ACTGAATC 1024
Query 1244 CGATGACTCTCCA-ATTCATGGAA--GA-GAAGAATCTCTGGTTAGAAAAT-CTTCTGGT 1298
|||||||||| | ||| ||| || || |||||||| ||||| || |||| || | ||
Sbjct 1025 TGATGACTCTC-ATATTTATGCAAAAGAAGAAGAATCACTGGTCAGGAAATACT-CAGGC 1082
Query 1299 -GT--TCGAGGTGG-ATT-C-CATGG-AGGGGGTGGTAGTGGAGATGACATGATG--G-A 1348
|| || |||||| | | | ||||| || || | || | |||||||||||| | |
Sbjct 1083 AGTGCTCAAGGTGGGACTACTCATGGGAGCGGAAGC-AGCAGCGATGACATGATGATGGA 1141
Query 1349 TGATCTTGATGAGATGATATTCGGTAAGAAA 1379
|||||| |||||||||||||| |||||||||
Sbjct 1142 TGATCTGGATGAGATGATATTTGGTAAGAAA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5