BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16890.1
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941190 jgi|Araly1|941190|scaffold_601734.1 2374 0.0
> Ahg941190 jgi|Araly1|941190|scaffold_601734.1
Length=1573
Score = 2374 bits (1285), Expect = 0.0
Identities = 1481/1576 (94%), Gaps = 11/1576 (1%)
Strand=Plus/Plus
Query 16 TCGAAGAAGCAGATCTCACAATGTCTGGAAAACAGCAAAATCATCGTTCTACTTCCTCCA 75
||||| || |||||||| |||||| ||| |||||||||||||||||||||||||| | ||
Sbjct 1 TCGAATAATCAGATCTCGCAATGTTTGGGAAACAGCAAAATCATCGTTCTACTTCTTGCA 60
Query 76 GACCCAGATCCAAAACCCTAAtcctcatcggctctctcttcaccgtctctctactcgtca 135
||||||||||||||||||||||| |||| ||||||||| ||||||||||||| | ||
Sbjct 61 GACCCAGATCCAAAACCCTAATCATCAT---TTCTCTCTTCTCCGTCTCTCTACTGGGCA 117
Query 136 tcctctacacc-tcttcttcctcctcccgagcctccATCTCCAATCC-CAACCCGTCGGA 193
||||||||||| || ||||||||||||||| |||| |||||||| || |||||||||||
Sbjct 118 TCCTCTACACCTTC-TCTTCCTCCTCCCGACCCTCAATCTCCAA-CCTGAACCCGTCGGA 175
Query 194 CCGACCAGAGACGTCCTTCGTTACCTCGCTTGAGCATTTCTTAATATATAAAGCTCCGAA 253
|| ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 176 CCAACCAGAGACGTCCTTCGTTACCTCGCTGGAGCATTTCTTAATCCAGAAAGCTCCGAA 235
Query 254 GCTCTCGTTACCGGTTAGAGACGACACGGTGCGTGGCGAGAGTGATGATGATGTGAGGAA 313
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 236 GCTCTCGTTACCGGTTAGAGACGACACGGTGCGTGGCGAGAGTGATGATGATGCGAGGAA 295
Query 314 GCTCGATGAGATGGTGTTCGAGAGAGAGAATCGTTGGTTGAACGAAGATCCGGGATATCC 373
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 GCTCGATGAGATGGTTTTTGAGAGAGAGAATCGGTGGTTGAACGAAGATCCGGGATATCC 355
Query 374 TGTTGAATTTCCGATTAAGGTTTACGTGTATGAGATGCCGAAGAAGTTTACTTTCGATCT 433
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGTTGGGTTTCCGATTAAGGTTTACGTGTATGAGATGCCGAAGAAGTTTACTTTCGATCT 415
Query 434 TCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCC 475
Query 494 TGTGCATCGTCTAATCGAACAGCATTCTATTGACTATTGGCTTTGGGCTGATCTGATATC 553
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 476 TGTGCATCGTCTAATCGAACAGCATTCTATTGACTATTGGCTCTGGGCTGATCTGATCTC 535
Query 554 TCCTGAATCTGAAAGGCGTTTGAAAAGTGTCGTGAGAGTTCAGAAGCAGCAGGACGCCGA 613
||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct 536 TCCTGAATCCGAAAGGCGTTTAAAAAGTGTCGTGAGGGTTCATAAGCAGCAAGACGCCGA 595
Query 614 CTTTTTCTATGTTCCGTTTTTCACTACAATCAGCTTTTTCTTGTTGGAGAAGCAGCAATG 673
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTTTTTCTATGTTCCGTTCTTCACTACAATCAGCTTTTTCTTGTTGGAGAAGCAGCAATG 655
Query 674 CAAAGCACTCTATAGGGAAGCTTTGAAGTGGGTCACTGATCAGCCTGCTTGGAAGAGGTC 733
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAAGGCACTCTATAGGGAAGCTTTGAAGTGGGTCACTGATCAGCCTGCTTGGAAGAGGTC 715
Query 734 CGAGGGAAGGGATCACATATTTCCTATTCATCATCCTTGGTCCTTCAAGTCTGTCCGCAA 793
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 716 CGAGGGAAGGGATCACATATTTCCTATTCATCATCCCTGGTCCTTTAAGTCTGTCCGCAA 775
Query 794 ATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGCAATTGGTATAA 853
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 ATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGGAATTGGTATAA 835
Query 854 GCCTGGGCAAGTTTCATTGGAGAAAGACCTAATTCTTCCTTATGTTCCCAATGTTGATAT 913
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 836 GCCTGGGCAAGTTTCATTGGAGAAAGACCTAATCCTTCCTTATGTTCCCAATGTTGATAT 895
Query 914 CTGTGATACCAAATGCTTGTCAGAAAGTGCACCAATGAGAACCACATTACtttt-tttCC 972
||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 896 CTGTGATGCCAAATGCTTGTCAGAAAGTGCACCGATGAGAACCACATTACTTTTCTTTC- 954
Query 973 GAGGGCGGCTTAAGCGAAATGCAGGGGGTAAAATACGTGCCAAACTTGGTGCAGAATTAA 1032
||||||| |||||| | ||||| || |||||||||||||||||||| ||||||||| |||
Sbjct 955 GAGGGCGCCTTAAGAGGAATGCTGGAGGTAAAATACGTGCCAAACTCGGTGCAGAACTAA 1014
Query 1033 GTGGTATCAAGGATATAATAATTTCTGAGGGGACTGCCGGAGAGGGAGGAAAATTGGCAG 1092
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTGGTGTCAAGGGTGTAATAATTTCTGAGGGGACTGCCGGAGAGGGAGGAAAATTGGCAG 1074
Query 1093 CGCAACGTGGCATGCGTAGATCTTTATTCTGTTTGTGTCCTGCTGGTGACACACCATCTT 1152
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCAAGGTGGCATGCGTAGATCTTTATTCTGTTTGTGTCCTGCTGGTGACACACCATCTT 1134
Query 1153 CAGCGAGGTTGTTTGATGCCATTGTCAGTGGCTGTATACCTGTTATAGTCAGTGACGAGT 1212
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CGGCGAGATTGTTTGATGCCATTGTCAGTGGCTGTATACCTGTTATAGTCAGTGACGAGT 1194
Query 1213 TGGAATTTCCTTTTGAAGGAATACTTGATTACAAGAAGGTTGCTGTGCTTGTTTCTTCCA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TGGAATTTCCTTTTGAAGGAATACTTGATTACAAGAAGGTTGCTGTGCTTGTTTCTTCCA 1254
Query 1273 GTGATGCAATACAGCCAGGGTGGCTTGTAAACCATCTGAGAAGTCTTACGCCCTTCCAAG 1332
||||||| |||| |||||||||||| |||| || || ||||| |||||||||||||||
Sbjct 1255 GTGATGCTGTACAACCAGGGTGGCTTCTAAATCACCTAAGAAGCCTTACGCCCTTCCAAA 1314
Query 1333 TCAAGGGGTTGCAGAATAATCTTGCTCAATACTCTCGCCATTTCCTATATTCGAGCCCTG 1392
|||||| ||||||||| || |||||||||||||| || |||||||||||||| |||||||
Sbjct 1315 TCAAGGAGTTGCAGAAAAACCTTGCTCAATACTCGCGGCATTTCCTATATTCAAGCCCTG 1374
Query 1393 CTCAGCCATTAGGTCCAGAGGACTTGACATGGAGAATGATAGCCGGAAAGCTGGTGAATA 1452
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1375 CTCAGCCATTAGGTCCAGAGGACTTGACATGGAGAATGATGGCCGGAAAGCTAGTGAATA 1434
Query 1453 TCAAGCTTCACACGAGGAGGTCACAGCGGGTCGTGAAAGGATCTAGGAGTATTTGCAGAT 1512
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1435 TCAAGCTTCACACGAGAAGGTCACAGCGGGTCGTGAAAGGATCTAGGAGCCTTTGTAGAT 1494
Query 1513 GCGATTGCTGGAGATCCAACTCTACAGCC-TCCAATTCTTTGAGTTCTCTCTTGTCTTAA 1571
|||||||||||| | ||||||| |||||| || ||| |||||| | ||||||||||||||
Sbjct 1495 GCGATTGCTGGAAACCCAACTCCACAGCCATC-AATCCTTTGAATCCTCTCTTGTCTTAA 1553
Query 1572 GACCGATCACTCTGAC 1587
|||| || ||||||||
Sbjct 1554 GACCTATAACTCTGAC 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65553311645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5