BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16890.1 Length=1747 Score E Sequences producing significant alignments: (Bits) Value Ahg941190 jgi|Araly1|941190|scaffold_601734.1 2374 0.0 > Ahg941190 jgi|Araly1|941190|scaffold_601734.1 Length=1573 Score = 2374 bits (1285), Expect = 0.0 Identities = 1481/1576 (94%), Gaps = 11/1576 (1%) Strand=Plus/Plus Query 16 TCGAAGAAGCAGATCTCACAATGTCTGGAAAACAGCAAAATCATCGTTCTACTTCCTCCA 75 ||||| || |||||||| |||||| ||| |||||||||||||||||||||||||| | || Sbjct 1 TCGAATAATCAGATCTCGCAATGTTTGGGAAACAGCAAAATCATCGTTCTACTTCTTGCA 60 Query 76 GACCCAGATCCAAAACCCTAAtcctcatcggctctctcttcaccgtctctctactcgtca 135 ||||||||||||||||||||||| |||| ||||||||| ||||||||||||| | || Sbjct 61 GACCCAGATCCAAAACCCTAATCATCAT---TTCTCTCTTCTCCGTCTCTCTACTGGGCA 117 Query 136 tcctctacacc-tcttcttcctcctcccgagcctccATCTCCAATCC-CAACCCGTCGGA 193 ||||||||||| || ||||||||||||||| |||| |||||||| || ||||||||||| Sbjct 118 TCCTCTACACCTTC-TCTTCCTCCTCCCGACCCTCAATCTCCAA-CCTGAACCCGTCGGA 175 Query 194 CCGACCAGAGACGTCCTTCGTTACCTCGCTTGAGCATTTCTTAATATATAAAGCTCCGAA 253 || ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| Sbjct 176 CCAACCAGAGACGTCCTTCGTTACCTCGCTGGAGCATTTCTTAATCCAGAAAGCTCCGAA 235 Query 254 GCTCTCGTTACCGGTTAGAGACGACACGGTGCGTGGCGAGAGTGATGATGATGTGAGGAA 313 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 236 GCTCTCGTTACCGGTTAGAGACGACACGGTGCGTGGCGAGAGTGATGATGATGCGAGGAA 295 Query 314 GCTCGATGAGATGGTGTTCGAGAGAGAGAATCGTTGGTTGAACGAAGATCCGGGATATCC 373 ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 296 GCTCGATGAGATGGTTTTTGAGAGAGAGAATCGGTGGTTGAACGAAGATCCGGGATATCC 355 Query 374 TGTTGAATTTCCGATTAAGGTTTACGTGTATGAGATGCCGAAGAAGTTTACTTTCGATCT 433 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TGTTGGGTTTCCGATTAAGGTTTACGTGTATGAGATGCCGAAGAAGTTTACTTTCGATCT 415 Query 434 TCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCC 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCC 475 Query 494 TGTGCATCGTCTAATCGAACAGCATTCTATTGACTATTGGCTTTGGGCTGATCTGATATC 553 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 476 TGTGCATCGTCTAATCGAACAGCATTCTATTGACTATTGGCTCTGGGCTGATCTGATCTC 535 Query 554 TCCTGAATCTGAAAGGCGTTTGAAAAGTGTCGTGAGAGTTCAGAAGCAGCAGGACGCCGA 613 ||||||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||| Sbjct 536 TCCTGAATCCGAAAGGCGTTTAAAAAGTGTCGTGAGGGTTCATAAGCAGCAAGACGCCGA 595 Query 614 CTTTTTCTATGTTCCGTTTTTCACTACAATCAGCTTTTTCTTGTTGGAGAAGCAGCAATG 673 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 596 CTTTTTCTATGTTCCGTTCTTCACTACAATCAGCTTTTTCTTGTTGGAGAAGCAGCAATG 655 Query 674 CAAAGCACTCTATAGGGAAGCTTTGAAGTGGGTCACTGATCAGCCTGCTTGGAAGAGGTC 733 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 CAAGGCACTCTATAGGGAAGCTTTGAAGTGGGTCACTGATCAGCCTGCTTGGAAGAGGTC 715 Query 734 CGAGGGAAGGGATCACATATTTCCTATTCATCATCCTTGGTCCTTCAAGTCTGTCCGCAA 793 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 716 CGAGGGAAGGGATCACATATTTCCTATTCATCATCCCTGGTCCTTTAAGTCTGTCCGCAA 775 Query 794 ATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGCAATTGGTATAA 853 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 776 ATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGGAATTGGTATAA 835 Query 854 GCCTGGGCAAGTTTCATTGGAGAAAGACCTAATTCTTCCTTATGTTCCCAATGTTGATAT 913 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 836 GCCTGGGCAAGTTTCATTGGAGAAAGACCTAATCCTTCCTTATGTTCCCAATGTTGATAT 895 Query 914 CTGTGATACCAAATGCTTGTCAGAAAGTGCACCAATGAGAACCACATTACtttt-tttCC 972 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 896 CTGTGATGCCAAATGCTTGTCAGAAAGTGCACCGATGAGAACCACATTACTTTTCTTTC- 954 Query 973 GAGGGCGGCTTAAGCGAAATGCAGGGGGTAAAATACGTGCCAAACTTGGTGCAGAATTAA 1032 ||||||| |||||| | ||||| || |||||||||||||||||||| ||||||||| ||| Sbjct 955 GAGGGCGCCTTAAGAGGAATGCTGGAGGTAAAATACGTGCCAAACTCGGTGCAGAACTAA 1014 Query 1033 GTGGTATCAAGGATATAATAATTTCTGAGGGGACTGCCGGAGAGGGAGGAAAATTGGCAG 1092 ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GTGGTGTCAAGGGTGTAATAATTTCTGAGGGGACTGCCGGAGAGGGAGGAAAATTGGCAG 1074 Query 1093 CGCAACGTGGCATGCGTAGATCTTTATTCTGTTTGTGTCCTGCTGGTGACACACCATCTT 1152 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 CTCAAGGTGGCATGCGTAGATCTTTATTCTGTTTGTGTCCTGCTGGTGACACACCATCTT 1134 Query 1153 CAGCGAGGTTGTTTGATGCCATTGTCAGTGGCTGTATACCTGTTATAGTCAGTGACGAGT 1212 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 CGGCGAGATTGTTTGATGCCATTGTCAGTGGCTGTATACCTGTTATAGTCAGTGACGAGT 1194 Query 1213 TGGAATTTCCTTTTGAAGGAATACTTGATTACAAGAAGGTTGCTGTGCTTGTTTCTTCCA 1272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1195 TGGAATTTCCTTTTGAAGGAATACTTGATTACAAGAAGGTTGCTGTGCTTGTTTCTTCCA 1254 Query 1273 GTGATGCAATACAGCCAGGGTGGCTTGTAAACCATCTGAGAAGTCTTACGCCCTTCCAAG 1332 ||||||| |||| |||||||||||| |||| || || ||||| ||||||||||||||| Sbjct 1255 GTGATGCTGTACAACCAGGGTGGCTTCTAAATCACCTAAGAAGCCTTACGCCCTTCCAAA 1314 Query 1333 TCAAGGGGTTGCAGAATAATCTTGCTCAATACTCTCGCCATTTCCTATATTCGAGCCCTG 1392 |||||| ||||||||| || |||||||||||||| || |||||||||||||| ||||||| Sbjct 1315 TCAAGGAGTTGCAGAAAAACCTTGCTCAATACTCGCGGCATTTCCTATATTCAAGCCCTG 1374 Query 1393 CTCAGCCATTAGGTCCAGAGGACTTGACATGGAGAATGATAGCCGGAAAGCTGGTGAATA 1452 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1375 CTCAGCCATTAGGTCCAGAGGACTTGACATGGAGAATGATGGCCGGAAAGCTAGTGAATA 1434 Query 1453 TCAAGCTTCACACGAGGAGGTCACAGCGGGTCGTGAAAGGATCTAGGAGTATTTGCAGAT 1512 |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| Sbjct 1435 TCAAGCTTCACACGAGAAGGTCACAGCGGGTCGTGAAAGGATCTAGGAGCCTTTGTAGAT 1494 Query 1513 GCGATTGCTGGAGATCCAACTCTACAGCC-TCCAATTCTTTGAGTTCTCTCTTGTCTTAA 1571 |||||||||||| | ||||||| |||||| || ||| |||||| | |||||||||||||| Sbjct 1495 GCGATTGCTGGAAACCCAACTCCACAGCCATC-AATCCTTTGAATCCTCTCTTGTCTTAA 1553 Query 1572 GACCGATCACTCTGAC 1587 |||| || |||||||| Sbjct 1554 GACCTATAACTCTGAC 1569 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65553311645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5