BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16910.1
Length=3728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488554 jgi|Araly1|488554|fgenesh2_kg.6__1688__AT5G16910.1 5541 0.0
Ahg477551 jgi|Araly1|477551|fgenesh2_kg.3__252__AT3G03050.1 3005 0.0
> Ahg488554 jgi|Araly1|488554|fgenesh2_kg.6__1688__AT5G16910.1
Length=3632
Score = 5541 bits (3000), Expect = 0.0
Identities = 3309/3461 (96%), Gaps = 9/3461 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCTAATAAGCATTTTGATAAAAGTCGATCAAATCTATCAAACAACTCTGATATT 60
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCATCTAATAAGCATTTCGATAAAAGTCCTTCAAATCTATCAAACAACTCTGATATT 60
Query 61 CAGGAGCCTGGAAGGCCACCTGCTGGTCACTCTGTCAAATTTGCTCAAAGAACTTCCTCG 120
|||||||||||||||||| ||| | ||| | || ||||||| || ||||||||||||
Sbjct 61 CAGGAGCCTGGAAGGCCATCTGTTCCTCAGACAGTAAAATTTGGTCGAAGAACTTCCTCC 120
Query 121 GGTCGCTATATCAATTACTCGAGGGACGATCTTGATAGCGAGTTGGGCGGTCAAGATTTC 180
||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GGTCGCTATATTAGTTACTCCAGGGACGATCTTGATAGCGAGTTGGGCAGTCAAGATTTC 180
Query 181 ATGAGCTATACAGTTCACATTCCTCCCACTCCAGATAACCAGCCAATGGACCCTTCCATT 240
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 181 ATGAGCTATACAGTTCAGATTCCTCCAACTCCAGATAACCAGCCGATGGACCCTTCTATT 240
Query 241 TCTCAGAAAGTTGAGGAGCAATATGTCGCTAACTCCATGTTCACTGGC-GGTTTCAAGAG 299
||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||| || ||
Sbjct 241 TCTCAGAAAGTTGAGGAACAATATGTCTCTAACTCGATGTTCACTGGCGGGTTT-AACAG 299
Query 300 CAACACCAGGGCTCACCTTATGCACAAAGTTATTGAGACAGAGCCTAACCATCCACAAAT 359
| ||||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||
Sbjct 300 CGCCACCAGGGCTCACCTTATGGACAAAGTGATTGAGACAAAGACTAACCATCCACAAAT 359
Query 360 GGCTGGCTCTAAAGGATCGTCTTGCGCGATCCCTGGCTGTGATGCTAAGGTTATGAGCGA 419
||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 360 GGCTGGCGCTAAAGGATCTTCTTGCGCCATCCCTGGCTGCGATGCTAAGGTTATGAGCGA 419
Query 420 TGAGAGAGGTCAAGACCTTCTTCCTTGTGAATGTGACTTTAAAATTTGTAGGGATTGCTT 479
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TGAGAGAGGTCAAGATCTTCTTCCCTGTGAATGTGACTTTAAAATTTGTAGGGATTGCTT 479
Query 480 CATAGATGCTGTCAAAACCGGAGGTGGGATTTGCCCCGGGTGTAAAGAACCGTACAAGAA 539
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATAGATGCGGTCAAAACCGGTGGTGGGATTTGCCCCGGGTGTAAAGAACCGTACAAGAA 539
Query 540 CACGCATTTGACCGATCAGGTTGATGAAAACGGTCAGCAAAGGCCTATGCTGCCTGGGGG 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 540 CACGCATTTGACCGATCAGGTTGATGATAACGGTCAGCAAAGGCCTATGCTGCCTGGTGG 599
Query 600 TGGCGGGTCAAAGATGGAGAGAAGATTGTCGATGGTGAAGTCAACTAATAAATCAGCTTT 659
||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 600 TGGCGGGTCGAAGATGGAGAGAAGATTGTCGTTGATGAAGTCAACTAATAAATCAGCTTT 659
Query 660 GATGAGGAGTCAGACTGGAGATTTTGATCACAACAGGTGGTTATTTGAGACGACTGGAAC 719
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 660 GATGAGGAGTCAGACTGGAGATTTTGATCACAATAGGTGGTTATTTGAGACGACCGGAAC 719
Query 720 TTATGGTTATGGGAATGCTTTTTGGACAAAGGACGGGGATTTCGGGAGCGGTAAGGATGG 779
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 TTATGGTTATGGAAATGCTTTTTGGACAAAGGACGGGAATTTCGGGAGCGGTAAGGATGG 779
Query 780 AGATGGAGATGGTGACGGTATGGGTATGGAGGCCCAAGATTTGATGAGCAGACCGTGGAG 839
|||||||||||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 780 AGATGGAGATGGTGAC------GGTATGGAGGCGCAAGATTTGATGAGCAAACCGTGGAG 833
Query 840 ACCGCTTACTCGGAAGCTGAAAATTCCTGCTGGTGTTATTAGTCCATACAGGCTTTTGAT 899
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACCACTTACTCGGAAGCTGAAAATTCCTGCTGGTGTTATTAGTCCATACAGGCTTTTGAT 893
Query 900 ATTTATCCGTATAGTTGTTCTTGCATTGTTCTTGACTTGGAGGGTTAAACATCAAAACCC 959
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 894 ATTTATCCGTATAGTTGTTCTTGCATTGTTCTTGACTTGGAGGATTAAACATCAAAACCC 953
Query 960 AGACGCTGTATGGTTATGGGGAATGTCTGTGGTTTGTGAGCTATGGTTTGCCTTGTCTTG 1019
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 AGACGCTATATGGTTATGGGGAATGTCTGTGGTTTGTGAGCTTTGGTTTGCCTTGTCTTG 1013
Query 1020 GCTTCTTGATCAGCTCCCTAAGCTATGCCCGATTAATCGTGCCACCGATCTTCAAGTCTT 1079
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1014 GCTTCTTGATCAGCTCCCTAAGCTATGCCCGATTAACCGTGCCACCGATCTTCAAGTCCT 1073
Query 1080 GAAGGAAAAGTTTGAAACACCGACAGCCAGCAACCCGACCGGCAAATCCGACCTTCCTGG 1139
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1074 GAAGGAAAAGTTTGAAACACCGACAGCCAGCAATCCGACCGGGAAATCCGACCTTCCTGG 1133
Query 1140 ATTCGATGTCTTTGTCTCTACTGCGGATCCGGAGAAAGAACCTCCTCTGGTCACTGCTAA 1199
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1134 ATTCGATGTGTTTGTCTCTACTGCGGATCCCGAGAAAGAACCTCCCCTGGTCACTGCTAA 1193
Query 1200 TACCATTTTATCTATTCTTGCTGCGGAATATCCTGTTGAGAAGCTTTCTTGCTATGTATC 1259
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1194 TACCATTTTATCGATTCTAGCTGCGGAATATCCGGTTGAGAAGCTTTCTTGCTATGTATC 1253
Query 1260 TGATGATGGAGGGGCGCTTCTTACGTTTGAAGCAATGGCTGAAGCTGCTAGCTTTGCCAA 1319
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1254 TGATGATGGAGGGGCGCTTCTTACGTTTGAAGCAATGGCTGAAGCTGCGAGCTTTGCAAA 1313
Query 1320 CATTTGGGTTCCTTTTTGTCGTAAACATGCGATCGAGCCGAGGAATCCTGATTCCTACTT 1379
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1314 CATTTGGGTTCCTTTTTGTCGTAAACATGCGATCGAGCCGAGGAATCCAGACTCCTACTT 1373
Query 1380 TAGCTTAAAGAGAGATCCTTACAAGAACAAAGTGAAGTCTGATTTCGTGAAGGATCGTAG 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1374 TAGCTTAAAGAGAGATCCTTACAAGAACAAAGTGAAGTCTGATTTCGTGAAGGACCGGAG 1433
Query 1440 ACGGGTTAAGCGTGAGTTTGATGAGTTTAAAGTCAGGGTTAACAGCTTGCCTGATTCTAT 1499
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1434 ACGGGTTAAGCGTGAGTTCGATGAGTTCAAAGTCAGGGTTAACAGCTTGCCTGATTCGAT 1493
Query 1500 CAGGCGACGTTCTGATGCTTATCATGCCAGAGAAGAAATCAAAGCCATGAAGATGCAGAG 1559
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1494 CAGGAGACGTTCTGATGCTTATCATGCCAGAGAAGAAATTAAAGCCATGAAGATGCAGAG 1553
Query 1560 GCAGAACAGGGACGATGAGCCTATGGAGCCCGTGAAGATTCCTAAAGCTACATGGATGGC 1619
|||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||
Sbjct 1554 GCAGAACAGGGACGATGAAATTTTGGAGCCCGTGAAGATTCCGAAAGCTACATGGATGGC 1613
Query 1620 TGATGGTACTCACTGGCCTGGAACTTGGTTGACTTCTGCCAGTGATCATGCCAAGGGAGA 1679
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1614 TGATGGTACTCACTGGCCTGGAACTTGGTTGACCTCTGCCAGTGATCATGCCAAAGGCGA 1673
Query 1680 CCACGCGGGTATCATTCAGGTGATGTTGAAGCCACCTAGTGATGAACCACTACACGGAGT 1739
|||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1674 CCACGCCGGTATCATTCAGGTGATGTTGAAGCCACCGAGTGATGAGCCATTACACGGAGT 1733
Query 1740 ATCCGAAGGGTTTCTTGATCTAACCGACGTGGACATTCGACTCCCGCTCCTTGTGTATGT 1799
||||||||||||||||||||||| || ||||| ||||||||||| |||||||| |||||
Sbjct 1734 GTCCGAAGGGTTTCTTGATCTAACTGATGTGGATATTCGACTCCCACTCCTTGTCTATGT 1793
Query 1800 TTCTCGTGAGAAGCGACCTGGTTATGATCATAACAAGAAGGCTGGAGCCATGAACGCCTT 1859
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1794 TTCTCGTGAGAAACGACCTGGTTATGATCATAACAAGAAGGCTGGAGCCATGAACGCCCT 1853
Query 1860 AGTCAGAGCTTCTGCGATTATGTCAAATGGACCGTTCATACTCAATCTTGACTGTGATCA 1919
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1854 CGTCAGAGCTTCTGCGATTATGTCAAATGGACCATTCATACTCAATCTTGACTGTGATCA 1913
Query 1920 TTACATATACAACTCTGAGGCTCTGAGAGAAGGCATGTGTTTCATGATGGATAGAGGCGG 1979
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1914 TTACATATACAACTCTGAGGCACTGAGAGAAGGTATGTGCTTCATGATGGATAGAGGCGG 1973
Query 1980 GGATCGTCTTTGCTACGTTCAGTTTCCGCAGCGGTTTGAAGGTATTGACCCATCTGATAG 2039
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1974 GGATCGGCTTTGCTACGTTCAGTTTCCGCAGCGGTTTGAAGGTATTGACCCGTCGGATAG 2033
Query 2040 ATATGCTAATCACAACACTGTCTTCTTTGACGTCAACATGAGAGCTCTTGATGGGCTTAT 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 ATATGCTAATCACAACACTGTCTTCTTTGACGTCAACATGAGAGCTCTTGATGGGCTTAT 2093
Query 2100 GGGTCCGGTTTATGTCGGAACCGGTTGTCTCTTCCGAAGAATCGCGCTTTATGGATTCAA 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 GGGTCCGGTTTATGTCGGAACCGGTTGTCTCTTCCGAAGAATCGCGCTTTATGGATTCAA 2153
Query 2160 TCCGCCTCGAAGCAAGGACTTTTCCCCAAGTTGCTGGAGTTGTTGTTTCCCTCGTAGCAA 2219
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TCCGCCTCGATCCAAGGACTTTTCCCCAAGTTGCTGGAGTTGTTGTTTCCCTCGTAGCAA 2213
Query 2220 GAAGAAGAATATTCCTGAAGAAAACCGAGCTCTGCGTATGAGTGATTATGATGACGAAGA 2279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 AAAGAAGAATATTCCTGAAGAAAACCGAGCTCTGCGTATGAGTGATTATGATGACGAAGA 2273
Query 2280 GATGAATCTCTCTCTAGTCCCGAAGAAGTTCGGTAACTCAACATTCCTCATTGATTCAAT 2339
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 2274 AATGAATCTCTCTCTAGTCCCTAAGAAATTCGGTAACTCGACATTCCTCATTGATTCAAT 2333
Query 2340 TCCCGTTGCTGAGTTCCAAGGCCGGCCTCTCGCGGACCACCCTGCGGTTAAAAACGGGCG 2399
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2334 TCCCGTTGCTGAGTTCCAAGGCCGGCCTCTTGCAGACCACCCTGCGGTTAAAAATGGGCG 2393
Query 2400 TCCACCGGGTGCACTCACCATTCCTCGAGAACTTCTTGATGCATCGACTGTAGCAGAAGC 2459
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2394 CCCACCCGGTGCACTCACCATTCCGCGAGAACTTCTTGATGCATCGACAGTAGCAGAAGC 2453
Query 2460 CATTGCTGTTATCTCTTGCTGGTACGAGGATAAAACTGAGTGGGGATCACGTATCGGATG 2519
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2454 CATTGCTGTTATCTCTTGCTGGTACGAGGATAAAACCGAGTGGGGATCACGTATCGGTTG 2513
Query 2520 GATTTACGGTTCAGTCACTGAAGATGTTGTCACAGGTTATAGAATGCATAACCGAGGCTG 2579
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 GATTTACGGGTCAGTCACTGAAGATGTTGTCACAGGTTATAGAATGCATAACCGAGGCTG 2573
Query 2580 GAAATCGGTTTACTGTGTGACGAAACGGGATGCTTTCCGTGGCACAGCTCCTATTAACTT 2639
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2574 GAAATCGGTTTACTGTGTGACGAAACGGGATGCTTTCCGTGGCACAGCTCCAATTAACTT 2633
Query 2640 GACGGATAGGCTTCACCAGGTTCTCCGTTGGGCTACTGGCTCGGTGGAGATCTTTTTCTC 2699
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 2634 GACGGATAGGCTTCACCAGGTTCTCCGGTGGGCTACTGGCTCGGTCGAGATCTTCTTCTC 2693
Query 2700 CCGTAACAACGCTCTTCTCGCAAGCTCGAAAATGAAAATACTCCAGAGAATTGCCTACTT 2759
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2694 CCGTAACAACGCTCTTCTGGCAAGCTCGAAAATGAAAATACTCCAGAGAATTGCCTACTT 2753
Query 2760 AAACGTCGGTATCTACCCGTTCACATCGATCTTCCTCATCGTATACTGTTTCCTACCAGC 2819
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2754 AAACGTCGGTATCTACCCCTTCACATCGATCTTCCTCATCGTCTACTGTTTCCTCCCAGC 2813
Query 2820 GCTCTCCCTCTTCTCTGGTCAGTTCATCGTCCAGACGCTCAACGTCACTTTCCTAGTCTA 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2814 GCTCTCCCTCTTCTCTGGTCAGTTCATCGTCCAGACGCTCAACGTCACTTTCCTAGTATA 2873
Query 2880 CCTTCTCATCATCTCCATCACTCTCTGCTTACTGGCCCTCCTCGAGATCAAATGGTCAGG 2939
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2874 CCTTCTCATCATCTCCATCACTCTCTGCTTACTCGCCCTCCTCGAGATCAAATGGTCAGG 2933
Query 2940 AATCTCACTCGAGGAATGGTGGAGAAACGAACAGTTTTGGCTCATTGGAGGAACAAGTGC 2999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2934 AATCTCACTCGAGGAATGGTGGAGAAACGAACAGTTTTGGCTCATTGGAGGAACAAGCGC 2993
Query 3000 TCATCTCGCAGCTGTGCTTCAAGGTTTGCTCAAAGTTGTAGCAGGAGTCGAAATCTCCTT 3059
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2994 TCATCTAGCAGCTGTGCTTCAAGGTTTGCTCAAAGTTGTAGCAGGAGTCGAAATCTCCTT 3053
Query 3060 CACGCTCACGAGTAAATCCGGAGGAGATGATATAGACGACGAGTTTGCGGATTTGTACAT 3119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3054 CACGCTCACTAGTAAATCCGGAGGAGATGATATAGACGACGAGTTTGCGGATTTGTACAT 3113
Query 3120 GGTGAAATGGACTTCACTTATGATCCCTCCGATTACCATCATTATGGTGAATCTGATAGC 3179
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 3114 GGTGAAATGGACTTCACTTATGATCCCTCCGATTACGATCATTATGGTGAATTTGATCGC 3173
Query 3180 GATTGCGGTTGGATTCAGCAGGACGATTTACAGTGTGGTTCCTCAGTGGAGTAAACTGAT 3239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 3174 GATTGCGGTTGGATTCAGCAGGACAATTTACAGTGTGGTTCCTCAGTGGAGTAAATTGAT 3233
Query 3240 TGGAGGAGTGTTCTTCAGTTTTTGGGTTTTGGCACATCTTTATCCATTTGCTAAAGGTCT 3299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3234 TGGAGGAGTGTTCTTCAGTTTTTGGGTTTTGGCACATCTTTATCCATTTGCTAAAGGTCT 3293
Query 3300 AATGGGAAGAAGAGGAAGAACACCAACGATTGTGTATGTTTGGTCTGGTCTTGTGGCCAT 3359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3294 AATGGGAAGAAGAGGAAGAACACCGACGATTGTGTATGTTTGGTCTGGTCTTGTGGCCAT 3353
Query 3360 TACCATTTCTCTTCTTTGGGTCGCCATTAATCCACCGGCTGGTAATACTGAGATCGGAGG 3419
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 3354 TACCATTTCTCTTCTTTGGGTCGCTATTAATCCTCCGGCTGGTAATACTGAGATTGGAGG 3413
Query 3420 AAACTTCAGTTTTCCATGATAGGTTGATTTCTTTC-TTGTC 3459
||||||||||||||||||||||||||||||||||| |||||
Sbjct 3414 AAACTTCAGTTTTCCATGATAGGTTGATTTCTTTCGTTGTC 3454
Score = 278 bits (150), Expect = 3e-73
Identities = 174/185 (94%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 3488 TCGTTGTCTTTTTATTGTATTAAATCATATTCCTTTATTAGA-T-TTTTTG-TTTTC-TT 3543
|||||||||||||||| ||| |||||| |||||||||||||| | |||||| ||||| ||
Sbjct 3447 TCGTTGTCTTTTTATTATATGAAATCACATTCCTTTATTAGATTATTTTTGTTTTTCTTT 3506
Query 3544 TCTGTCTGAAGATGATGATGGATCATGTTAGGACAAAGATCGGTTAAATATAGTTTGAAC 3603
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3507 TCTGTCTGAAGATGATGATGGATCATGTTAGGACAAAGATCGACTAAATATAGTTTGAAC 3566
Query 3604 GAGTGCAGGAACTTAGTTTCCCTCGTTGTCCTTTTTTGGTTCTCTGTTGTATCATTTGTT 3663
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 3567 GAGTGCAGGAACTTAGTTTCTCTCGTTGTCTTTTTTTGGTTCTCTGTTGTATCATTTGTT 3626
Query 3664 TATGA 3668
|||||
Sbjct 3627 TATGA 3631
> Ahg477551 jgi|Araly1|477551|fgenesh2_kg.3__252__AT3G03050.1
Length=4124
Score = 3005 bits (1627), Expect = 0.0
Identities = 2899/3503 (83%), Gaps = 128/3503 (4%)
Strand=Plus/Plus
Query 1 ATGGCATCTAATAAGCATTTTGATAAA-AGTCGATCAAATCTATCAAAC-AACTCTGAT- 57
||||| |||||||| |||| | | ||| ||| |||| |||||||| ||| |||||||||
Sbjct 480 ATGGCGTCTAATAATCATTAT-ACAAACAGTAGATCCAATCTATC-AACAAACTCTGATG 537
Query 58 ATTCAGGAGCCTGGAAGG--CCACCTG-CTG-GTC--ACTCTGTCAAATTTGCTCAAAGA 111
| | | || |||| ||| ||| | | ||| ||| || |||||| |||||| | ||
Sbjct 538 CTGCTGAAG-CTGGGAGGCACCAGCAGCCTGTGTCAAACACTGTCACATTTGCCCGCAGG 596
Query 112 ACTTCCTC-GGGTCGCTATATCAATTACTCGAGGGACGATCTTGATAGCG-AGTTGGGCG 169
||| |||| ||| |||||| |||| ||||| || || ||||| ||||||| | || ||
Sbjct 597 ACTCCCTCTGGG-CGCTATGTCAACTACTCCAGAGATGATCTCGATAGCGAACTT-GGAA 654
Query 170 GTCAAGATTTCA-TGAGCTATACAGTTCACATTCCTCCCACTCCAGATAACCAGCCAATG 228
|| ||| ||| | |||||||| ||||| ||||| || ||||| ||||||||||| |||
Sbjct 655 GTGTTGATCTCACT-AGCTATACGGTTCATATTCCGCCAACTCCTGATAACCAGCCTATG 713
Query 229 GACCCTTCCATTTCTCAGAAAGTTGAGGAGCAATATGTCG-CTAACTCCATGTTCACTGG 287
|| || ||||| |||||||| ||||||||||| ||||| | | || || ||||||||||
Sbjct 714 GATCCATCCATCTCTCAGAAGGTTGAGGAGCAGTATGT-GTCGAATTCGTTGTTCACTGG 772
Query 288 CGGTTTCAAGAGCAACAC-CAGGGCTCACCTTATGCACAAAGTTATTGAGACAGAGCCTA 346
|||||| || ||| || | ||||||| |||||| ||||||| || || || ||| |||
Sbjct 773 CGGTTTTAACAGCGTGACTC-GGGCTCATCTTATGGACAAAGTGATCGACACGGAGACTA 831
Query 347 ACCATCCACAAATGGCTGGCT-CTAAAGGATCGTCTTGCGCGATCCCTGGCTGTGATGCT 405
|||||| || ||||| || | |||||||||||||||||||| | ||||| ||||||| |
Sbjct 832 GCCATCCGCAGATGGC-GGGTGCTAAAGGATCGTCTTGCGCGGTTCCTGGTTGTGATG-T 889
Query 406 -AAGGTTATGAGCGATGAGAGAGGTCAAGACCTTCTTCCTTGTGAATGTGACTTT-AAAA 463
||||| ||||| || |||||||||||||| |||||||| ||||| ||||| ||| ||||
Sbjct 890 GAAGGTGATGAGTGACGAGAGAGGTCAAGATCTTCTTCCCTGTGAGTGTGA-TTTCAAAA 948
Query 464 TTTGTAGGGATTGCTTCATAGATGCTGTCAAAACCGGAGGTGGGATTTGCCCCGGGTGTA 523
| |||||||||||||| | |||||||| |||| | ||| ||||| || ||||||||||
Sbjct 949 TCTGTAGGGATTGCTTTGTTGATGCTGTGAAAA-C--AGGCGGGATGTGTCCCGGGTGTA 1005
Query 524 AAGAACCGTACAAGAACACGCATTTGACCGATCAGGTTGATGAA-AA-CGGTCAGCAAAG 581
| || || |||| ||||||| ||||| | ||| | ||| || || | | |||||| |
Sbjct 1006 AGGAGCCTTACAGGAACACGGATTTGGCGGATTTTGCCGAT-AACAAGCAG-CAGCAACG 1063
Query 582 GCCTATGC-T--GCC-TGGGGGTGGCGGGTCAAAGATGGAGAGAAGATTGTCGA-TGGTG 636
|||||||| | ||| | | || ||| | ||| ||||||| |||||||| | || ||
Sbjct 1064 GCCTATGCTTCCGCCACCAGCG-GGTGGGCCCAAGGTGGAGAGGAGATTGTC-ATTGATG 1121
Query 637 AAGTCAACTAATAAATCAGCTTTGATGAGGAGTCAGACTGGAGATTTTGATCACAACAGG 696
||||| || ||| || | ||||||||||||||| || || |||||||||||||| ||
Sbjct 1122 AAGTCGAC---TAAGTCTGGTTTGATGAGGAGTCAAACCGGGGATTTTGATCACAATAGA 1178
Query 697 TGGTTATTTGAGACGACTGGAACTTATGGTTAT-GGGAATGCTTTTTGGACAAAGGACGG 755
||||| |||||||| | ||| ||||| |||| | || |||||||| |||||||| |||||
Sbjct 1179 TGGTTGTTTGAGACTAGTGGGACTTACGGTT-TCGGTAATGCTTTCTGGACAAAAGACGG 1237
Query 756 GGATTTCGGGAGCGGTAAGGATGGAGATGGAGATGGTGACGGTATGGGTATGGAGGCC-C 814
| |||||||||| | |||||| | ||| || | | | | ||||||| |||| |
Sbjct 1238 GAATTTCGGGAGTGACAAGGAT---G--GGA-AT-G-G-C--CA-CGGTATGG-GGCCGC 1284
Query 815 AAGATTTGATGAGCAGACCGTGGAGACCGCTTACTCGGAAGCTGAAAATTCCTGCTGGTG 874
| ||| |||||||| ||||||||||||| ||||||||||| ||| | |||||||| ||||
Sbjct 1285 AGGATCTGATGAGCCGACCGTGGAGACCACTTACTCGGAAACTGCAGATTCCTGCAGGTG 1344
Query 875 TTATTAGTCCATACAGGCTTTTGATAT-TTATCCGTATAGTTGTTCTTGC-ATTGTTCTT 932
|||| ||||| |||||||||||||| | ||||||| || ||||||||||| || |||||
Sbjct 1345 TTATCAGTCCTTACAGGCTTTTGAT-TGTTATCCGAATTGTTGTTCTTGCGCTT-TTCTT 1402
Query 933 GACT-TGGAGGGTTAAACATC-AAAACCCAGACGCTGTATGGTTATGGGGAATGTCTGTG 990
|| | |||||| |||| || | |||||| ||| || ||||| |||||||||||||||||
Sbjct 1403 GA-TGTGGAGGATTAAGCA-CAAAAACCAAGATGCAATATGGCTATGGGGAATGTCTGTG 1460
Query 991 GTTTGTGAGCTATGGTTTGCCTTGTCTTGGCTTCTTGATCAGCTCCCTAAGCTATGCCCG 1050
||||||||||||||||| ||||| |||||||||||||||||||| || ||||| || |||
Sbjct 1461 GTTTGTGAGCTATGGTTCGCCTTATCTTGGCTTCTTGATCAGCTTCCAAAGCTGTGTCCG 1520
Query 1051 ATTAATCGTGCCACCGATCTTCAA-G-TCTTGAAGGAAAAGTTTGAAACACCGACAGCC- 1107
||||| || || || |||| |||| | |||| || ||||| || |||||||| ||| ||
Sbjct 1521 ATTAACCGAGCTACGGATC-TCAATGTTCTT-AAAGAAAAATTCGAAACACCTACA-CCG 1577
Query 1108 AGCAACCCGACCGGCAAATCCGACCTTCCTGGATTCGATGTCTTTGTCTCTACTGCGGAT 1167
||||||||||| || ||||| || || || ||| ||||| | ||||| ||||| || |||
Sbjct 1578 AGCAACCCGACTGGGAAATCTGATCTCCCAGGACTCGATATGTTTGTATCTACAGCAGAT 1637
Query 1168 CCGGAGAAAGAACCTCCTCTGGTCACTGCTAATACCATTTTATCTATTCTTGCTGCGGAA 1227
|| ||||||||||||||||| |||||| | || ||||||||||| ||||| ||||| ||
Sbjct 1638 CCAGAGAAAGAACCTCCTCTTGTCACTTCCAACACCATTTTATCGATTCTCGCTGCTGAC 1697
Query 1228 TATCCTGTTGAGAAGCTTTCTTGCTATGTATCTGATGATGGAGGGGCGCTTCTT-ACGTT 1286
|| ||||| || |||||| |||||||||| || ||||||||||| |||||| || || ||
Sbjct 1698 TACCCTGTCGAAAAGCTTGCTTGCTATGTTTCAGATGATGGAGGAGCGCTT-TTGACATT 1756
Query 1287 TGAAGCAATGGCTGAAGCTGCTAGCTTTGCCAACATTTGGGTTCCTTTTTGTCGTAAACA 1346
|||||| ||||||||||| || || ||||| ||||| ||||||||||| || ||||||||
Sbjct 1757 TGAAGCCATGGCTGAAGCAGCGAGTTTTGCAAACATGTGGGTTCCTTTCTGCCGTAAACA 1816
Query 1347 TGCGATCGAGCCGAGGAATCCTGATTCCTACTTTAG-CTTAAAGAGAGATCCTTACAAGA 1405
||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||
Sbjct 1817 CAATATCGAGCCGAGGAATCCGGATTCATACTTTAGTCTTAAA-AGAGATCCTTACAAGA 1875
Query 1406 ACAAAGTGAAGTCTGATTTCGTGAAGGATCGTAGACGGGTTAAGCGTGAGTTTGATGAGT 1465
||||||||||| |||||||||| |||||||| |||||||| |||||||||| ||||||||
Sbjct 1876 ACAAAGTGAAGGCTGATTTCGTTAAGGATCGGAGACGGGTGAAGCGTGAGTATGATGAGT 1935
Query 1466 TTAAAGTCAGGGTTAACAGCTTGCCTGATTCTATCAGGCGACGTTCTGATGCTTATCATG 1525
|||| || ||| | |||||||||||||| || |||||||| |||||||||||||| || |
Sbjct 1936 TTAAGGTTAGGATCAACAGCTTGCCTGACTCCATCAGGCGCCGTTCTGATGCTTACCACG 1995
Query 1526 CCAGAGAAGAAATCAAAGCCATGAAGATGCAGAGGCAGAACAGGGACGATGAGCCTA-TG 1584
| || ||||| || || ||||||||| ||||||| |||||||| || |||||| || |
Sbjct 1996 CAAGGGAAGAGATTAAGGCCATGAAGCTGCAGAGACAGAACAGAGATGATGAG-GTAGTA 2054
Query 1585 GAGCCCGTGAAGATTCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCTGGAACT 1644
||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2055 GAGCCAGTCAAGATTCCTAAAGCTACATGGATGGCTGATGGTACTCATTGGCCTGGCACT 2114
Query 1645 TGGTTGACTTCT-G-CCAGTGATCATGCCAAGG-GAGACCACGCGGGTATCATTCAGGTG 1701
||| | | |||| | || ||||||| || | | ||||| || |||||||||||||||
Sbjct 2115 TGGATAAATTCTAGTCC--TGATCATTCCC-GTAGTGACCATGCTGGTATCATTCAGGTG 2171
Query 1702 ATGTTGAAGCCACCTAGTGATGAACCACTACACGGAGTATCCGAAGGGTTTCTT-GATCT 1760
||||||||||| || |||||||| ||| |||| ||||| || |||||||| ||| |||||
Sbjct 2172 ATGTTGAAGCCGCCGAGTGATGAGCCATTACATGGAGTGTCTGAAGGGTT-CTTAGATCT 2230
Query 1761 AACCGACGTGGACATTCGACTCCCGCTCCTTGTGTATGTTTCTCGTGAGAAGCGACCTGG 1820
|| || || |||||||| || ||||| ||||| |||||||| || ||||||||||| ||
Sbjct 2231 TACAGATGTTGACATTCGTCTTCCGCTTCTTGTCTATGTTTCGCGCGAGAAGCGACCGGG 2290
Query 1821 TTATGATCATAACAAGAAGGCTGGAGCCATGAACGC-CTTAGTCAGAGCTTCTGCGATTA 1879
|||||||||||||||||| || ||||||||||| || || ||| |||||||||| ||||
Sbjct 2291 TTATGATCATAACAAGAAAGCAGGAGCCATGAATGCGCTG-GTCCGAGCTTCTGCAATTA 2349
Query 1880 TGTCAAATGGACCGTTCATACTCAATCTTGACTGTGATCATTACATATACAACTCTGAGG 1939
|||| || || || ||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 2350 TGTCCAACGGTCCATTCATACTCAATCTTGATTGTGATCATTACATATACAACTCTCAAG 2409
Query 1940 CTCTGAGAGAAGGCATGTGTTTCATGATGGATAGAGGCGGGGATCGTCTTTGCTACGTTC 1999
|| | |||||||| |||||||||||||||||| |||| || || || |||||||||||||
Sbjct 2410 CTTTAAGAGAAGGAATGTGTTTCATGATGGATCGAGGTGGTGACCGGCTTTGCTACGTTC 2469
Query 2000 AGTTTCCGCAGCGGTTTGAAGGTATTGACCCATCTGATAGATATGCTAATCACAACACTG 2059
|||| ||||| ||||||||||||||||||||||| ||| | ||||| ||||| ||||| |
Sbjct 2470 AGTTCCCGCAACGGTTTGAAGGTATTGACCCATCAGATCGTTATGCGAATCATAACACAG 2529
Query 2060 TCTTCTTTGACGTCAACATGAGAGCTCTTGATGGGCTTA-TGGGTCCGGTTTATGTCGGA 2118
|||||||||| || |||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 2530 TCTTCTTTGATGTGAACATGAGAGCTCTTGATGGT-TTAATGGGTCCGGTATATGTCGGA 2588
Query 2119 ACCGGTTGTCTCTTCCGAAGAATCGCGCTT-TATGGATTCAATCCGCCTCGAAGC-AAGG 2176
|| ||||||||||| ||||||||||| || || |||||| ||||||| || || || |
Sbjct 2589 ACGGGTTGTCTCTTTAGAAGAATCGCG-TTGTACGGATTCGATCCGCCCCGG-GCTAAAG 2646
Query 2177 A-CTTT-TCCCCAAGTTGCTGGAGTTGTTGTTTCCCTCGTAGCAAGAAGAAGAATA---- 2230
| | |||| | || ||| ||||| || ||| |||| |||||||||||| |
Sbjct 2647 AACACCATCCCGGA-TT-CTGCAGTTGCTGCTTCTCTCG---CAAGAAGAAGAAAAGCCG 2701
Query 2231 T-TCCT-GAAGAAAACCGAGCTCTGCGTATGAGTGAT---T-A--TGATGACGAAGAGAT 2282
| ||| |||||||||||| || || | ||| ||| | | | |||||| ||||||||
Sbjct 2702 TGTCCCAGAAGAAAACCGATCTTTGAGAATGGGTGGTGACTCAGATGATGATGAAGAGAT 2761
Query 2283 GAATCTCTCTCTAGTCCCGAAGAAGTTCGGTAACTCAACATTCCTCATTGATTCAATTCC 2342
|||||| ||| | || || ||||| ||||| ||||| || ||||| || |||||||||||
Sbjct 2762 GAATCTTTCTTTGGTTCCAAAGAAATTCGGAAACTCCACTTTCCTTATCGATTCAATTCC 2821
Query 2343 CGTTGCTGAGTTCCAAGGCCGGCCTCTCGCGGACCACCCTGCGGTTAAAAACGGGCGTCC 2402
||||| ||||||||||| || ||||| ||||| ||||| || || ||||||| || ||
Sbjct 2822 GGTTGCCGAGTTCCAAGGTCGTCCTCTTGCGGATCACCCAGCTGTGCAAAACGGACGACC 2881
Query 2403 ACCGGGTGCACTCACCATTCCTCGAGAACTTCTTGATGCATCGACTGTAGCAGAAGCCAT 2462
||| || || |||||||||||||| || ||||| |||||||| ||||| |||||||||||
Sbjct 2882 ACCCGGAGCTCTCACCATTCCTCGCGAGCTTCTCGATGCATCAACTGTGGCAGAAGCCAT 2941
Query 2463 TGCTGTTATCTCTTGCTGGTACGAGGATAAAACTGAGTGGGGATCACGTATCGGATGGAT 2522
|| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 2942 AGCCGTCATCTCTTGTTGGTACGAGGATAAAACTGAGTGGGGATCTCGGATCGGTTGGAT 3001
Query 2523 TTACGGTTCAGTCACTGAAGATGTTGTCACAGGTTATAGAATGCATAACCGAGGCTGGAA 2582
||| || || ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3002 TTATGGATCTGTCACGGAAGATGTGGTCACAGGTTATAGAATGCATAACCGAGGCTGGAA 3061
Query 2583 ATCGGTTTACTGTGTGACGAAACGGGATGCTTTCCGTGGCACAGCTCCTATTAACTTGAC 2642
|||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||
Sbjct 3062 ATCGGTTTACTGTGTGACCAAAAGGGATGCTTTCCGTGGCACAGCTCCAATCAACTTGAC 3121
Query 2643 GGATAGGCTTCACCAGGTTCTCCGTTGGGCTACTGGCTCGGTGGAGATCTTTTTCTCCCG 2702
|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 3122 GGATAGGCTTCACCAGGTTCTCCGATGGGCTACTGGCTCGGTAGAGATCTTCTTCTCAAA 3181
Query 2703 TAACAACGCTCTTCTC-GCAAGCTCGAAAATGAAAATACTCCAGAGAATTGCCTACTTAA 2761
||||| || ||||| || ||| ||| ||||||||| ||||||||||| || ||| |||
Sbjct 3182 AAACAATGC-CTTCTTTGCTAGCCCGAGAATGAAAATCCTCCAGAGAATCGCTTACCTAA 3240
Query 2762 ACGTCGGTATCTACCCGTTCACATCGAT-CTTCCTCATCGTATACTGTTTCCTACCAGCG 2820
||||||| |||||||| |||||||| || ||||||||| || ||||| ||||| || ||
Sbjct 3241 ACGTCGGAATCTACCCATTCACATC-ATTCTTCCTCATAGTGTACTGCTTCCTCCCCGCT 3299
Query 2821 CTCTCCCTCTTCTCTGGTCAGTTCATCGTCCAGACGCTCAACGTCACTTTCCTAGTCTAC 2880
|||||||| ||||| || || ||||| ||||| || ||||| ||||| ||||| ||||||
Sbjct 3300 CTCTCCCTATTCTCAGGCCAATTCATAGTCCAAACACTCAATGTCACATTCCTTGTCTAC 3359
Query 2881 CTTCTCA-TCATCTCCATCACTCTCTGCTTACTGGCCCTCCTCGAGATCAAATGGTCAGG 2939
|| || | |||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 3360 CT-CTTAATCATCTCCATTACACTCTGCTTACTCGCTCTCCTCGAGATCAAATGGTCAGG 3418
Query 2940 AATCTCACTCGAGGAATGGTGGAGAAACGAACAGTTTTGGCTCATTGGAGGAACAAGTGC 2999
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 3419 AATCTCACTCGAGGAATGGTGGCGAAACGAGCAGTTCTGGCTCATTGGAGGAACAAGCGC 3478
Query 3000 TCATCTC-GCAGCTGTGCTTCAAGGTTTGCTCAAAGTTGTAGCAGGAGTCGAAATCTCCT 3058
||| || || || || | ||||| ||||||||||||| || ||| |||||||||| |
Sbjct 3479 TCA-CTTAGCCGCGGTTATCCAAGGGCTGCTCAAAGTTGTTGCCGGAATCGAAATCTCAT 3537
Query 3059 TCACGCTCACGAG-TAAATCCGGAGGAGATGATATAGACGACGAGTTTGCGGATTTGTAC 3117
|||| | || | ||||||||||||||| ||| |||| ||||| ||||||||| |||||
Sbjct 3538 TCACATTGAC-ATCTAAATCCGGAGGAGAGGATGTAGATGACGAATTTGCGGATCTGTAC 3596
Query 3118 ATGGTGAAATGGACTTCACTTATGATCCCTCCGATTACCATCATTATGGTGAATCTGATA 3177
|| ||||||||||| || || |||||||| || || || ||||| ||||||||||| ||
Sbjct 3597 ATTGTGAAATGGACATCCCTCATGATCCCACCAATCACAATCATGATGGTGAATCTCATC 3656
Query 3178 GCGATTGCGGTTGGATTCAGCAGGACGATTTACAGTGTGGTTCCTCAGTGGAGTAAACTG 3237
||||| ||||| || || ||||||||||| ||||||||| |||| ||||||||||| ||
Sbjct 3657 GCGATCGCGGTCGGGTTTAGCAGGACGATATACAGTGTGATTCCGCAGTGGAGTAAGTTG 3716
Query 3238 ATTGGAGGAGTGTTCTTCAGTTTTTGGGTTTTGGCACATCTTTATCCATTTGCTAAAGGT 3297
||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||
Sbjct 3717 ATTGGAGGAGTGTTCTTCAGTTTCTGGGTACTGGCTCATCTTTATCCATTCGCTAAAGGG 3776
Query 3298 CTAATGGGAAGAAGAGGAAGAACACCAACGATTGTGTATGTTTGGTCTGGTCTTGTGGCC 3357
|| ||||||||||||||||| || || || ||||| |||||||||||||| ||||| |||
Sbjct 3777 CTTATGGGAAGAAGAGGAAGGACTCCGACTATTGTATATGTTTGGTCTGGACTTGTTGCC 3836
Query 3358 ATTACCATTTCTCTTCTTTGGGTCGCCATTAATCCACCGGCTGGTAATACTGAGATCGGA 3417
|| ||||||||||| |||||||| |||||||||||||| |||||| |||| | ||||||
Sbjct 3837 ATCACCATTTCTCTGCTTTGGGTTGCCATTAATCCACCTGCTGGTTCTACTCAAATCGGA 3896
Query 3418 GGAAACTT-CAGTTTTCCATGAT 3439
||| ||| || ||| |||||||
Sbjct 3897 GGAT-CTTTCACTTTCCCATGAT 3918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140851077673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5