BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16920.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488555 jgi|Araly1|488555|fgenesh2_kg.6__1689__AT5G16920.1 1122 0.0
> Ahg488555 jgi|Araly1|488555|fgenesh2_kg.6__1689__AT5G16920.1
Length=928
Score = 1122 bits (607), Expect = 0.0
Identities = 733/790 (93%), Gaps = 23/790 (3%)
Strand=Plus/Plus
Query 70 AAAAATGAGAGCTATTCAAACTCATGTGATAACCTTCTGCATGTTAGTCATCATCGTAAC 129
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 28 AAAAATGAGAGCTATTCAAACTCAAGTGATAACCTTCTGCATGTTAGTCATCATCGTAAC 87
Query 130 ATCATCAACAAGAGCCCAAAAGAGTCCTCATGTGCCTAACAACCATGAACTTTCTATCGC 189
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 88 ATCATCAACAAGAGCCCAAAAGAGTCATCATGTGCCAAACAACCATGAACTTTCTGTCGC 147
Query 190 CATCGAAGAAATGGAGAAAGCAAATTACTTCTCTTTTGTGATGCTCATCAACATGTTACC 249
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 148 CATCGAAGAAATGGAGAAAGCAAATTACTTCTCTTTTGTGATGCTTATCAACATGTTACC 207
Query 250 ATCCGTAAATCCTCGATTCTTAGCCAATGTCACATTCTTGATGCCAAAGGACAAAACCCT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 ATCCGTAAATCCTCGATTCTTAGCCAATGTCACATTCTTGATGCCAAAGGACAAAACCCT 267
Query 310 TTCTACATCAAACATTATTAATCAACAAGATTCGGTTACCGAGTTCTTGCTTCGCCACTC 369
||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 268 TTCTAGATCAAACATTATTAATCAACAGGATTCGGTTTCTGAGTTCTTGCTTCGCCACTC 327
Query 370 AATCCCTTCTTCTCTTCTTTTCGAGCACCTTAATCTCATCCCCAATGGCTCCATTGTTCC 429
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 328 AATCCCTTCCTCTCTTCTTTTCGAGCATCTCAATCTCATCCCCAATGGCTCCATTGTTCC 387
Query 430 TTCCTCTTTACCACATTACACCCTCGAGATCTCCAATGGTGGAAGATCAAACTACTTTCT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TTCCTCTTTACCACATTACACCCTCGAGATCTCCAATGGTGGAAGATCAAACTACTTTCT 447
Query 490 CAATAACGTCAAGATTATAAGCCGCAACATATGTAGCTTAGGCTCTATCAAATGTCATGG 549
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 448 CAATAATGTCAAGATTATAAGCCGCAACATTTGTAGCTTAGGCTCTATCAAATGTCATGG 507
Query 550 AATCGACGGTATACTACAATCTCCAAGTACTGTCGACGACGATTCTCCTCGA-AATAATC 608
||| |||||||| |||||||||||||||||| ||||||| |||||||||| | |||||||
Sbjct 508 AATTGACGGTATCCTACAATCTCCAAGTACTATCGACGATGATTCTCCTC-ATAATAATC 566
Query 609 ACACATTACCCTTCATTTCTTGCCCTAGCAGTCACAACAATAGTGACCAAAATAGTCATA 668
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 567 ACACTTTACCCTTCATTTCTTGCCCTAGCAGTCACAACAATAGTGACCAAAGTAGTCATA 626
Query 669 ACAATAGTGATCAAAATAGTTCTCGTCCTGCTGATCATACTCTTACCGCTCCTCCTCCAG 728
|||||||| || | || |||| || |||||||||||||||||||| ||||
Sbjct 627 ACAATAGT--TC----T----CT--TCCTACT---CATACTCTTACCGCTCCTCCACCAG 671
Query 729 TCAGCAGTCCGATTAGCCAGCCAAAATCAGATTCTCCTAGCATCCATGACGTGAAAATGC 788
||||||||| || |||||||||||||||||| ||||||||||| ||| |||||
Sbjct 672 CCAGCAGTCC------CCTGCCAAAATCAGATTCTCCAAGCATCCATGAGGTGGAAATGT 725
Query 789 TGACTTCGATCGTTATTCCTTTGTTTGGATTATTAGCGAGTTTGATCGGCATGTGAAGTA 848
| | ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 726 TAAATTCGATCGTTATTCCTTTGCTTGGATTATTAGCGGGTTTGATCTGCATGTGAAGTA 785
Query 849 TAATACTGCA 858
|| |||||||
Sbjct 786 TACTACTGCA 795
Score = 111 bits (60), Expect = 8e-24
Identities = 127/155 (82%), Gaps = 21/155 (14%)
Strand=Plus/Plus
Query 891 CATTGTGTGTAATAGTACTCTCTTGTTATAGTTTATATTTACTATATACATGTAAAAGaa 950
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 794 CATTGTGTGTAATAGTACTCTCTTGTTATAGTTTATATCTAC-A----CATGTAAAAGAA 848
Query 951 aaaaaaCGATGAACCTTATTGTAACAATCAGTTAAATTATGAGTTT-AGTTTTTAAATTT 1009
||||| || | | | |||||| || |||| ||||||| | |||| ||||||
Sbjct 849 AAAAA----TG----T-A----A-CAATCAATTCAATT-TGAGTTTTAATTTTAAAATTT 893
Query 1010 CCTTTATAATATTTCTTTAGAGACTTTCCTCCAAA 1044
|||||||||||| | ||||||||||||||||||||
Sbjct 894 CCTTTATAATATCTATTTAGAGACTTTCCTCCAAA 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5