BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16930.1
Length=2414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893605 jgi|Araly1|893605|Al_scaffold_0006_1601 3295 0.0
Ahg340454 jgi|Araly1|340454|fgenesh1_pg.C_scaffold_3000217 1358 0.0
> Ahg893605 jgi|Araly1|893605|Al_scaffold_0006_1601
Length=1932
Score = 3295 bits (1784), Expect = 0.0
Identities = 1881/1929 (98%), Gaps = 2/1929 (0%)
Strand=Plus/Plus
Query 186 ATGGCTCAGAAAATTGCGATTGGTGTGATCTCAGCCCTAGCTGCCTCCGCTTCTCTCGCG 245
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCAGAAACTTGCGATTGGTGTGATCTCAGCCCTAGCTGCCTCCGCTTCTCTCGCG 60
Query 246 CCGTCGAAATTCGCTGCTGCAGATGGACCTTTCACTTTCTCTGGCTTCTCCACTTCTCCG 305
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 CCGTCGAAATTCGCTGCTGCAGATGGACCTTTCACTTTCTCCGGCTTCTCCACCTCTCCG 120
Query 306 TCTGCTTCGATTCCTCAGCAGCAAGGTTCTACTCCGCCGGCGTCGGAATCTGGGAAAGAA 365
|||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||
Sbjct 121 TCTGCTTCGATTCCTCAGCAACAAGTTTCTTCTCCGCCGGCGTCGGAATCTGGAAAAGAA 180
Query 366 CCGTCTGTTGCTGGCGAAGAATCTGATGCTCCTCCTCGGATTCGGAACAATAATCCGAGA 425
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CCGTCTGTTACTGGCGAAGAATCTGATGCTCCTCCTCGGATTCAGAACAATAATCCGAGA 240
Query 426 ACAACTTCAGCTGGGTTTGATCCGGAAGCG-TTGGAGCGAGGAGCAAAGGCCTTGAAAGG 484
|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 241 ACAACTTCAGCTGGATTTGATCCGGAAGCGCTT-GAGCGAGGAGCAAAGGCCTTGAAGGG 299
Query 485 GATCAACAACTCAGCTCATGCCAAAAAGGTATTTGAAAGTATTAAGACTCGAGAAGAGAC 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GATCAACAACTCAGCTCATGCCAAAAAGGTATTTGAAAGTATTAAGACTCAAGAAGAGAC 359
Query 545 GAGGCAGGCTGAGTTTACCGCTAAGGCGCAGGAGTTTAAAGCTATGCAATCCCAAGCTGA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGGCAGGCTGAGTTTACCGCTAAGGCGCAGGAGTTTAAAGCTATGCAATCCCAAGCTGA 419
Query 605 AGCTGAGAGGCAAAGGGTGATATATGAGGAACAGAAGAAACTTGCTCAGCACCAAGCACA 664
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCTGAGAGGCAAAGGGTAATATATGAGGAACAGAAGAAACTTGCTCAGCACCAAGCACA 479
Query 665 AACAAAATCACAGATGGCCCGCTATGAAGATGAGTTAGCAAGAAAAAGGATGCAGGCTGA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AACAAAATCACAGATGGCCCGCTATGAAGATGAGTTAGCAAGAAAAAGGATGCAGGCTGA 539
Query 725 GAATGAAGCCCAGAGGACAAGAAACCAAGAACTTGTGAAAATGCAAGAAGAATCAGCAAT 784
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GAATGAGGCCCAGAGAACAAGAAACCAAGAACTTGTGAAAATGCAGGAAGAATCAGCAAT 599
Query 785 TAGGCGGGAAGTAGCTCGACGAGCTACTGAGGAAGAGATTCAAGCCCAGAGACGACAGAC 844
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 600 TAGGCGGGAAGTAGCTCGACGAGCTACTGAAGAAGAGATTCAAGCACAGAGACGACAAAC 659
Query 845 AGAGAGGGAGAAAGCTGAGATTGAACGTGAGACAATCAGGGTCAAAGCTATGGCAGAAGC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAGAGGGAGAAAGCTGAGATTGAACGTGAGACAATCAGGGTCAAAGCTATGGCAGAAGC 719
Query 905 TGAAGGGAGAGCTCGTGAATCAAAGCTTTCTGAGGATGTCAACAGGAGAATGCTTGTTGA 964
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TGAAGGGAGAGCTCGTGAATCAAAGCTTTCTGAGGATGTTAACAGGAGAATGCTTGTTGA 779
Query 965 TCGTGCAAATGCAGAAAGAGAGAAATGGGTTTCTGCCATCAATACTACCTTCGATCATAT 1024
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 TCGTGCAAATGCAGAAAGAGAGAAATGGGTTTCTGCCATCAATACTACATTCGATCATAT 839
Query 1025 TGGAGGGGGGTTGCGTACCATTCTAACAGATCAAAATAAGCTAATTGTTGCTGTTGGAGG 1084
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 TGGAGGGGGCTTGCGTACCATTCTAACGGATCAAAATAAGCTAATTGTTGCTGTTGGAGG 899
Query 1085 TCTAACCGCTCTTGCAGCTGGGATCTACACAACGAGAGAAGGTGCCAAGGTTATCTGGAG 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCTAACCGCTCTTGCAGCTGGGATCTACACAACGAGAGAAGGTGCCAAGGTTATCTGGAG 959
Query 1145 CTACGTAGATAGAATATTAGGACAACCTTCTCTAATTAGAGAATCATCGAGAGGAAAGTA 1204
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 CTACGTGGATAGAATATTAGGACAACCTTCTCTAATTAGAGAATCATCAAGAGGAAAGTA 1019
Query 1205 CCCTTGGTCTGGTTCTGCTTCTCGTGTCTTGTCCACATTGCGGGGTGGTGGTAAGGAGTC 1264
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCCTTGGTCTGGTTCCGCTTCTCGTGTCTTGTCCACATTGCGGGGTGGTGGTAAGGAGTC 1079
Query 1265 TACTTCCAAAACTGGAAAAGGGTTTGGTGATGTTATCTTGCGCCCTGCTCTTGAAAAGAG 1324
||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1080 TACTTCCAAAAATGGAAAAGGGTTTGGTGATGTTATTTTGCGTCCTGCTCTTGAAAAGAG 1139
Query 1325 AATCGAACAGCTAGCTAATGCAACTGCCAACACAAAAGCCCACCAAGCACCTTTCCGAAA 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AATCGAACAGCTAGCTAATGCAACTGCCAACACAAAAGCCCACCAAGCACCTTTCCGAAA 1199
Query 1385 TATACTTTTCTACGGTCCACCAGGAACAGGGAAGACAATGGCTGCCCGAGAGCTGGCTCG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TATACTTTTCTACGGTCCACCAGGAACAGGGAAGACAATGGCTGCCCGAGAGCTGGCTCG 1259
Query 1445 AAGATCTGGTCTAGATTATGCATTGATGACGGGTGGAGATGTTGCTCCACTTGGAGCTCA 1504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TAGATCTGGTCTAGATTATGCATTGATGACGGGTGGAGATGTTGCTCCACTTGGAGCTCA 1319
Query 1505 GGCTGTAACAAAGATACACCAACTGTTTGACTGGTCCAAAAAATCTAAGAGAGGCTTGTT 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGCTGTAACAAAGATACACCAACTGTTTGACTGGTCCAAAAAATCTAAGAGAGGCTTGTT 1379
Query 1565 GCTCTTCATCGATGAAGCCGATGCATTTCTGTGCGAGCGGAACAAAACATACATGAGCGA 1624
|||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 1380 GCTCTTCATCGATGAAGCCGATGCATTTTTATGCGAGCGTAACAAAACATACATGAGCGA 1439
Query 1625 AGCCCAAAGGAGTGCACTAAATGCCCTCCTCTTCCGTACGGGTGACCAGTCCAAAGACAT 1684
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1440 AGCCCAAAGGAGTGCACTAAATGCACTCCTCTTCCGCACGGGTGACCAGTCCAAAGACAT 1499
Query 1685 AGTCCTAGCGCTTGCCACAAACAGACCTGGTGATCTAGACTCAGCAGTGGCTGACCGTAT 1744
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1500 AGTCCTAGCGCTTGCCACAAACAGACCTGGTGATCTAGACTCAGCAGTGTCTGACCGTAT 1559
Query 1745 CGATGAGACTCTTGAATTCCCCTTGCCTGGAGAAGAAGAGCGCTTCAAGCTTCTAAACCT 1804
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CGATGAGACGCTTGAGTTCCCCTTGCCTGGAGAAGAAGAGCGCTTCAAGCTTCTAAACCT 1619
Query 1805 CTACCTAGAGAAGTACATATCTAAGACGAATCTAAAAAAGCCGGGTTTGCTCCAAAGCCT 1864
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1620 CTACCTAGAAAAGTACATATCTAAGGCTAATCTAAAAAAGCCGGGTTTGCTCCAAAGCCT 1679
Query 1865 TTTCAAAAAAGAGCAGCAGACAATTGAGATAAAAGGCGTTACTGAGGATCTCCTGAAAGA 1924
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 1680 TTTCAAAAAAGAGCAGCAGAAAATTGGGATAAAAGGCATTACTGAGGATCTCCTGAAAGA 1739
Query 1925 AGCTGCCGCCAAAACAAAAGGGTTTTCGGGTAGAGAAATCGCGAAATTGATGGCAAGCGT 1984
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1740 AGCTGCCGCCAAAACAAAAGGGTTTTCAGGTAGAGAAATCGCGAAATTGATGGCAAGCGT 1799
Query 1985 TCAAGCTGCTGTGTATGGAAGCGCAAACTGCTTATTGGACGCAAACCTTTTCAGAGAGGT 2044
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1800 TCAAGCTGCTGTGTATGGAAGCGCAAACTGCTTATTGGACGCAACCCTTTTCAGAGAGGT 1859
Query 2045 CATTGATTACAAAGTCGCAGAGCATCAACAGAGaaaaaaaCTAGCTGGAACCGATGCAGG 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CATTGATTACAAAGTCGCAGAGCATCAACAGAGAAAAAAACTAGCTGGAACCGATGCAGG 1919
Query 2105 TAACAAGAA 2113
|||||||||
Sbjct 1920 TAACAAGAA 1928
> Ahg340454 jgi|Araly1|340454|fgenesh1_pg.C_scaffold_3000217
Length=1929
Score = 1358 bits (735), Expect = 0.0
Identities = 1182/1395 (85%), Gaps = 42/1395 (3%)
Strand=Plus/Plus
Query 719 GGCTGAGAATGAAG-CCCAGAGGA-CAAGAAACCAAGAACTTGTGAAAATGCAAGAAGAA 776
||| ||||||| || ||| | || ||||||| ||||||||||||||||||||||||||
Sbjct 546 GGCCGAGAATG-AGTTCCATA-GAGCAAGAAATCAAGAACTTGTGAAAATGCAAGAAGAT 603
Query 777 TCAGCAATTAGGCGGGAAGTAGCTCGACGAGCTACTGAGGAAG-AGATTCAAGCCCAGAG 835
|| |||||||||| |||| |||||||||||||||||||| || |||| || || |||||
Sbjct 604 TCGGCAATTAGGCAGGAACAAGCTCGACGAGCTACTGAGG-AGCAGATCCAGGCGCAGAG 662
Query 836 ACGACAGACAGAGAGGGAGAAAGCTGAGATTGAACGTGAGACAATCAGGGTCAAAGCTAT 895
|||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 663 ACGACAAACTGAGAGGGAGAAGGCTGAGATTGAACGTGAGACCATCAGGGTCAAAGCTAT 722
Query 896 GGCAGAAGCTGAAGGGAGAGCTCGTGAATCAAAGCTTTCTGAGGATGTCAACAGGAGAAT 955
|||||||| ||||| ||||| | |||| | | |||| |||| ||||| ||||| |||||
Sbjct 723 AGCAGAAGCGGAAGGAAGAGCCCATGAAGCTAGGCTTGCTGAAGATGTAAACAGAAGAAT 782
Query 956 GCTTGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTTCTGCCATCAATACTACCTT 1015
|||||||||||||||||||||||||||||||||||||||| ||||||| || || || ||
Sbjct 783 GCTTGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTGCTGCCATAAACACAACATT 842
Query 1016 CGATCATATTGGAGGGGGGTTGCGTACCATTCTAACAGATCAAAATAAGCTAATTGTTGC 1075
|| ||||||||||| || || ||| | ||||| || ||||||||||| || |||||||
Sbjct 843 TGACCATATTGGAGGCGGTTTACGTGCAATTCTGACGGATCAAAATAAACTGGTTGTTGC 902
Query 1076 TGTTGGAGGTCTAACCGCTCTTGCAGCTGGGATCTACACAACGAGAGAAGGTGCCAAGGT 1135
|||||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 903 TGTTGGGGGTGTAACTGCTCTAGCAGCTGGAATCTACACAACGAGAGAAGGTGC-AAGGG 961
Query 1136 T-ATCTGGAGCTACGTAGATAGAATATTAGGACAACCTTC-TCTAATTAGAGAATCATCG 1193
| ||||||||||| || || ||||||||||||||||| || | |||| ||||||||||
Sbjct 962 TCATCTGGAGCTATGTGGACAGAATATTAGGACAACCATCGT-TAATCCGAGAATCATCA 1020
Query 1194 AGAGGAAAGTACCCTTGGTCTGGTTCTGCTT-CTCGTGTCTTGTCCACATTGCGGGGTGG 1252
||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||
Sbjct 1021 AGAGGCAAGTACCCTTGGTCTGGTTC-GCTTTCTCGTGTAATGTCCACATTGCGGGGT-- 1077
Query 1253 TGGTAAGGAGTCTA-CTTCCAAAACTGGAAAAGGGTTTGGTGATGTTAT-CTTGCGCCCT 1310
|||||| | | ||||||||| |||| ||||||||||||||||||| || || |||
Sbjct 1078 ----AAGGAGCC-AGCTTCCAAAAGTGGACAAGGGTTTGGTGATGTTATTCT-GCATCCT 1131
Query 1311 GCTCTTGAAAAGAGAATCGAACAGCT-AGCTAATGCAACTGCCAACACAAAAGC-CCACC 1368
| ||| ||| |||||| || || || |||||||||||| |||||||||||| | ||| |
Sbjct 1132 CCCCTTCAAAGGAGAATTGAGCA-CTTAGCTAATGCAACCGCCAACACAAAA-CTCCATC 1189
Query 1369 AAGCACCTTTCCGAAATATACTTTTCTACGGTCCACCAGGAACAGGGAAGACAATGGCTG 1428
| || |||||||||||| | |||||||||||||| ||||||||||| || ||||||||||
Sbjct 1190 AGGCTCCTTTCCGAAATGTGCTTTTCTACGGTCCTCCAGGAACAGGAAAAACAATGGCTG 1249
Query 1429 CCCGAGAGCTGGCTCG-AAGATCTGGTCTAGATTATGCATTGATGACGGGTGGAGATGTT 1487
| ||||||||||||| || ||||||| | ||||||||| ||||||| ||||||||||||
Sbjct 1250 CTAGAGAGCTGGCTCGTAA-ATCTGGTTTGGATTATGCACTGATGACTGGTGGAGATGTT 1308
Query 1488 GCTCCACTTGGAGCTCAGGCTGTAACAAAGATACACCAACTGTTTGACTGGTCCAAAAAA 1547
||||| |||||| |||||||||| ||||| || ||| || ||||||| ||| ||||||
Sbjct 1309 GCTCCCCTTGGATCTCAGGCTGTTACAAAAATTCACGAATTGTTTGATTGGGGCAAAAAG 1368
Query 1548 TCTAAGAGAGGCTTGTTGCTCTTCATCGATGAAGCCGATGCATTTCTGTGCGAGCGGAAC 1607
||||||||||| || ||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct 1369 TCTAAGAGAGGTTTATTGCTCTTCATTGATGAAGCCGATGCATTTTTGTGCGAGAGGAAC 1428
Query 1608 AAAACATACATGAGCGAAGCCCAAAGGAGTGCACTAAATGCCCTCCTCTTCCGTACGGGT 1667
|||||||||||||| ||||||||||||||||| |||||||| || ||||| || ||||||
Sbjct 1429 AAAACATACATGAGTGAAGCCCAAAGGAGTGCTCTAAATGCTCTTCTCTTTCGCACGGGT 1488
Query 1668 GACCAGTCCAAAGACATAGTCCTAGCGCTTGCCACAAACAGACCTGGTGATCTAGACTCA 1727
|| |||||||||||||||||| |||| ||||| || ||| |||||||||| |||||||||
Sbjct 1489 GATCAGTCCAAAGACATAGTCTTAGCACTTGCTACTAACCGACCTGGTGACCTAGACTCA 1548
Query 1728 GCAGTGGCTGACCGTATCGATGAGACT-CTTGAATTCCCCTTGCCTGGAGAAGAAGAGCG 1786
|| |||||||||||| ||||||| | | |||||||||||||| |||||||||||||||||
Sbjct 1549 GCTGTGGCTGACCGTGTCGATGA-AGTTCTTGAATTCCCCTTACCTGGAGAAGAAGAGCG 1607
Query 1787 CTTCAAGCTTCTAAACCTCTACCTAGAGAAGTACATATCTAAGAC-GAATCTAAAAAAGC 1845
||||||||| ||||||| || ||||| ||||||||| || || | | || ||||||||
Sbjct 1608 GTTCAAGCTTTTAAACCTATATCTAGAAAAGTACATAGCTGAGGCTGG-TCCAAAAAAGC 1666
Query 1846 CGGGTTTGCTCCAAAGCCTTTTCAAAAAAGAGCAGCAGACA-ATTGAGATAAAAGGCGTT 1904
|| ||||| || | |||| ||||| ||||| ||||||| | || |||||||| || ||
Sbjct 1667 CGAGTTTGTTCGACCGCCTCTTCAAGAAAGAACAGCAGA-AGATCGAGATAAAGGGTGTC 1725
Query 1905 ACTGAGGATCTCCTGAAAG-AAGCTGCCGCCAAAACAAAAGGGTTTTCGGGTAGAGAAAT 1963
|||||||| ||| | |||| |||| || || ||||| |||||||||| |||||||| ||
Sbjct 1726 ACTGAGGAGCTCTT-AAAGGAAGCAGCTGCAAAAACCGAAGGGTTTTCAGGTAGAGAGAT 1784
Query 1964 CGCGAAATTGATGGCAAGCGTTCAAGCTGCTGTGTATGGAAGCGCAA-ACTGCT-TATTG 2021
|||||| |||||||||| |||||||| ||||| |||||||| | | |||| | | |||
Sbjct 1785 TGCGAAACTGATGGCAAGTGTTCAAGCAGCTGTTTATGGAAGTG-AGGACTG-TGTGTTG 1842
Query 2022 GACGCAAACCT-TTTCAGAGAGGTCATTGATTACAAAGTCGCAGAGCATCAACAGAGaaa 2080
||| | || ||| |||||||| |||| |||||||| |||||||||||||||||||
Sbjct 1843 GACTCTGTGCTATTT-AGAGAGGTTGTTGAGTACAAAGTTGCAGAGCATCAACAGAGAAG 1901
Query 2081 aaaaCTAGCTGGAAC 2095
|||| | ||||||||
Sbjct 1902 AAAATTGGCTGGAAC 1916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90959505060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5