BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16940.1
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488557 jgi|Araly1|488557|fgenesh2_kg.6__1691__AT5G16940.1 798 0.0
> Ahg488557 jgi|Araly1|488557|fgenesh2_kg.6__1691__AT5G16940.1
Length=692
Score = 798 bits (432), Expect = 0.0
Identities = 495/526 (94%), Gaps = 2/526 (0%)
Strand=Plus/Plus
Query 9 TGAACAAAATCTGAGAATCTTCATCGATCGCGAAATAAACACACTGGTCAACAAAATCTG 68
|||||||||| ||||||| |||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1 TGAACAAAATTTGAGAATTTTCATCGATCGCTAAATATACACACTGTTCAACAAAATCTG 60
Query 69 ATTTCAGCAATAATTAGGAATGGAATCAGAGTTAATATTTCATGAAGGTGGATGTCATTG 128
|||| ||||||||||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 61 ATTTAAGCAATAATTAGGCATGGAATCAGAGTTGAGACTTCATGAAGGTGGATGTCATTG 120
Query 129 TGGGAAAATCAAATGGAGAGTTAAAGCAGCAAGAAGTGTGATTGCTTGGAGCTGCAACTG 188
|||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||| ||
Sbjct 121 TGGGAAAATCAAATGGAGAGTTAAAGCAGCAACAAGTGTGGTGGCTTGGAGATGCAATTG 180
Query 189 CTCAGATTGTTCAATGAGAGGCAATGTTCACTTTATTGTTCCTTCAAGCAACTTTGAGCT 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CTCAGATTGTTCAATGAGAGGCAATGTTCACTTTATTGTTCCTTCAAGCAACTTTGAACT 240
Query 249 TCTTGATGACTC-AAAGGACTTCATTACTACTTACACTTTTGGGACTCACACGGCCAAAC 307
||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TCTTGATGATTCCAAAG-ACTTCATTACTACTTACACTTTTGGGACTCACACGGCCAAGC 299
Query 308 ATACCTTCTGCAAGGTTTGTGGGATCACATCGTTTTATATCCCGAGGTCTAACCCTGATG 367
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 300 ATACCTTCTGCAAGGTTTGTGGGATCACATCGTTTTATATCCCGAGATCTAACCCCGATG 359
Query 368 GAGTCGCTGTCACAGTTAAGTGTGTCAAGTCGGGGACACTGGCTCACATCGAGGTCAAAA 427
||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct 360 GAGTCGCTGTCACAGTTAAGTGTGTCAAGTCAGGGACACTGGATCACGTCGAGGTCAAAA 419
Query 428 GCTATGATGGTCAGAACTGGGAAATGTCGCACAAAAAGACTGGTATTGCCTCGTTTTCCA 487
||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct 420 GCTATGATGGTCAGAACTGGGAAGTGTCTCACAAAAAGACCGGTATTGCCTCCTTTTCCA 479
Query 488 AGGAGTGATATGACAAGATCAACTCAAGATGGTAATGGCTAAGAAA 533
||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 480 AGGAGTGATATGATAAGATCAACTCAAGATTGTAATGGCTAAGAAA 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27334131489
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5