BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16950.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941195 jgi|Araly1|941195|scaffold_601739.1 473 4e-133
> Ahg941195 jgi|Araly1|941195|scaffold_601739.1
Length=346
Score = 473 bits (256), Expect = 4e-133
Identities = 303/325 (93%), Gaps = 6/325 (2%)
Strand=Plus/Plus
Query 46 ATTCGTTGGGCGATTCAAAATGGCAAGTGAGGGAGCAAAGGATCCATGGAAAGGAGAAGA 105
||| ||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2 ATTTGTTAGGCGATTAAAAATGGCAAGTGAAGAAGCAAAGGATCCATGGAAAGGAGAAGA 61
Query 106 GTGGGGAACTGAGAATGAGAAGACGAAGAAGCCAACAA------CAAGTGGTGTGAAAAC 159
|||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 62 GTGGGGGACTGAGAATGAGAAGACGAAGAAGCCAACAAGTGGTGGTGGTGGTGTGAAAAC 121
Query 160 GGTGACGAGAGCGAGGAAACAAATACCGAGGGGACTTGAAGACAAGTACGAAGCTTACTT 219
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 122 GGTGACGAGAGCGAGAAAACAAATACCGAGGGGACTTGAAGATAAATACGAAGCTTACTT 181
Query 220 CCTCCCGCGAAAGCCATGGCCAAGGGCTCTTGCCTACTATGGAAGTTTCATCCTTGGTGG 279
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 182 CCTCCCGCGAAAGCCATGGCCGAGGGCTCTTGCCTACTATGGAAGTTTTATCCTTGGTGG 241
Query 280 GATCGGTGCTGGTATGGTTATTGAAGCTTGGATCAACAAAAAAGTCAAAGAAGATGGAGG 339
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 242 GATTGGTGCTGGTATGGTTATTGAAGCTTGGATCAACAAGAAAGTCAAAGAAGATGGAGG 301
Query 340 AGTCATTTGGGAATTCGACAAGTGA 364
|||||||||||||||||||||||||
Sbjct 302 AGTCATTTGGGAATTCGACAAGTGA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5