BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16960.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605 1668 0.0
Ahg941199 jgi|Araly1|941199|scaffold_601743.1 822 0.0
Ahg941200 jgi|Araly1|941200|scaffold_601744.1 761 0.0
Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248 654 0.0
Ahg925647 jgi|Araly1|925647|scaffold_201208.1 158 1e-37
> Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605
Length=1041
Score = 1668 bits (903), Expect = 0.0
Identities = 996/1042 (96%), Gaps = 2/1042 (0%)
Strand=Plus/Plus
Query 27 ATGGCGACAACGATCAACAAGCAAGTCGTGTTACTTGATTACGTAACCGGTTTCGCCAAG 86
|||| ||| | |||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 1 ATGGAGACGATGATCAACAAGCAAGTCGTATTACGTGATTACGTAACCGGTTTTGCCAAC 60
Query 87 GAATCCGACCTTGTAATCACCTCCACCACCATCGATCTTAGGGTGCTAAAGGGATCTATG 146
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 61 GAATCCGACCTTGTAATCACCTCCACCACCGTCGATCTTAGGGTGCCGAAGGGATCTATG 120
Query 147 ACGGCGTTGGTGAAGAATCTCTACTTGTCTTGTGATCCTTACATGCGAAATCGTATGAGG 206
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 121 ACGGCGTTGGTGAAGAATCTCTACTTGTCTTGCGATCCTTACATGCGGAATCGTATGAGA 180
Query 207 AAACCTGATCCTCTGAGCCCTGCTACTGCTCAGTCCTTCACTCCCGGCAAGCCTATCTCA 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACCTGATCCTTTGAGCCCTGCTACTGCTCAGTCCTTCACTCCCGGCAAGCCTATCTCA 240
Query 267 GGGTTTGGAGTGTCTAAAGTGATAGATTCTGGACACTCAGATTACGAAGAAGGTGACTTA 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGTTTGGAGTGTCTAAAGTGATAGATTCTGGACACTCAGATTACGAAGAAGGTGACTTA 300
Query 327 ATTTGGGGAGCAGTAGGATGGGAAGAGTACAGTGTTATTACACCAATTCCTAATCTTCAC 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTGGGGAGCAGTAGGATGGGAAGAGTACAGTGTTATTACACCAATTCCTAATCTTCAC 360
Query 387 TTCAAGATCCATCATACCAATTTTCCTTTATCTTACTACACAGGACTTCTTGGTATGCCT 446
||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 361 TTCAAAATCCATCATACCGATTTTCCCTTATCTTACTACACTGGACTTCTTGGTATGCCT 420
Query 447 GGTATGACCGCGTATGTTGGGTTTTACGAGATATGTACTCCAAAGAAAGGAGATACTGTG 506
||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 421 GGTATGACCGCATATGTTGGGTTTTACGAGATCTGTTCTCCAAAGAAAGGAGATACCGTG 480
Query 507 TTTGTGTCGGCTGCATCTGGCGCGGTTGGTCAGCTTGTAGGACAATTTGCTAAGTTGATG 566
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 TTTGTGTCAGCTGCCTCTGGCGCGGTTGGTCAGCTTGTAGGACAATTTGCTAAGATGATG 540
Query 567 GGTTGTTATGTTGTTGGAAGCGCTGGGAGTAAAGAAAAGGTTGATCTCCTCAAGAACAAG 626
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GGTTGTTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATCTCCTCAAGAACAAG 600
Query 627 TTTGGATTCGATGATGCCTTCAACTACAAGGAAGAACACAATCTTATTGGTGCCCTAAAA 686
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 601 TTTGGATTCGATGATGCATTCAACTACAAAGAAGAACACAATCTTATTGCTGCCCTAAAA 660
Query 687 AGGTGTTTCCCTGAAGGCATTGACATATACTTTGAGAACGTAGGAGGCAAGATGCTGGAT 746
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 AGGTGTTTCCCTGAAGGCATTGACATATACTTTGAGAACGTGGGAGGCAAGATGCTGGAT 720
Query 747 GCAGTGATCTTAAACATGAGACCACACGGCCGTATCGCGGCATGTGGGATGATCTCACAG 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAGTGATCTTAAACATGAGACCACACGGCCGTATCGCGGCATGTGGGATGATCTCACAG 780
Query 807 TACAATCTGAAGAATCCGGAAGGTATATACGGCCTCTCGCTCATTACATACAAACGAATC 866
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 781 TACAATCTGAAGAATCCGGAAGGCATATACGGGCTCTCGCTCATTACCTACAAACGAATC 840
Query 867 CGTATTGAAGGGTTCAACTGTTTCGATTACTTCCACAAATACTCGGAGTTCTTGGAGTTT 926
||||| |||||||| |||||||||||||||||| |||||||||| || ||||||||||||
Sbjct 841 CGTATCGAAGGGTTTAACTGTTTCGATTACTTCGACAAATACTCAGAATTCTTGGAGTTT 900
Query 927 GTGGTTCCGTATATAAAAGAAGGGAAGATAAAGTATGTGGAAGATGTTGCTGATGG-ACT 985
|||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| | |
Sbjct 901 GTGGTTCCGTATATAAGAGAAGGTAAGATAACGTATGTGGAAGATGTTGCTGATGGGA-T 959
Query 986 CGAGAGTGCTCCTGCTGCTCTCGTTGGACTCTTTCACGGTAAAAACGTCGGGAAACAACT 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGAGAGTGCTCCTGCTGCTCTCGTTGGACTCTTTCACGGTAAAAACGTCGGGAAACAACT 1019
Query 1046 TGTCGTGGTTTCGCCATCATAA 1067
|||||||||||||||||| |||
Sbjct 1020 TGTCGTGGTTTCGCCATCTTAA 1041
> Ahg941199 jgi|Araly1|941199|scaffold_601743.1
Length=1083
Score = 822 bits (445), Expect = 0.0
Identities = 825/1003 (82%), Gaps = 47/1003 (5%)
Strand=Plus/Plus
Query 75 GGTTTCGCC-AAGGAATCCGACCTT-GTA-ATCACCTCCACCACCATCGATCTT-AGGGT 130
|||||| || ||||||||||| || | | ||||| |||||||| |||| ||| ||| |
Sbjct 74 GGTTTC-CCTAAGGAATCCGA-TTTCG-ATTTCACCACCACCACCGTCGAACTTAAGGTT 130
Query 131 GCTAAAGGGATCTATGACGGCGT-TGGTGAAGAATCTCTACTTGTCTTGTGATCCTTACA 189
| || || |||| ||| | ||||||| ||||||||| |||| || ||||||||||
Sbjct 131 CCGGAA-GGTTCTAACTCGG-TTCTGGTGAAAAATCTCTACCTGTCATGCGATCCTTACA 188
Query 190 TGCGAAATCGTATGAGGAAACCTGATCCTCTGAGCC-CTGCTAC-TGCTC-AGTCCTT-C 245
|||| | ||| ||||| |||||| | | | | || ||||| | ||||| || ||| |
Sbjct 189 TGCGGACTCGCATGAGCAAACCT-AAAC-C--ATCCACTGCT-CTTGCTCAAG--CTTAC 241
Query 246 ACTCCCGGCAAGCCTATCTCAGGGTTTGGAGTGTCTAAAGTGATAGATTCTGGACACT-C 304
||||||||| |||| ||||| |||| ||||||||||| ||||||||| || ||||| | |
Sbjct 242 ACTCCCGGCCAGCCAATCTCTGGGTATGGAGTGTCTAGAGTGATAGAATCCGGACA-TCC 300
Query 305 AGATTACGAAGAAGGTGACTTAAT-TTGGGGAGCAGTAGGATGGGAAGAGTACAGTGTTA 363
||||||| || |||| || ||| | | ||||| ||| |||||||| |||||||||||||
Sbjct 301 AGATTACCAAAAAGGCGATTTACTCTGGGGGA-TAGTTGGATGGGAGGAGTACAGTGTTA 359
Query 364 TTACACCAATTCCT-AATCTTCACTTCAAGATCCATCATACCAATTTTCCTTTATCTTAC 422
| || |||| ||| || |||| ||||||||||| |||||| || |||| ||||| |||
Sbjct 360 TCACTCCAACACCTCAA-GTTCATTTCAAGATCCAGCATACCGATGTTCCATTATCCTAC 418
Query 423 TACACAGGACTTCTTGGTATGCCTGGTATGACCGCGTATGTTGGGTTTTACG-AGATATG 481
|| || |||||||| ||||||||||||||||| || |||| ||||||||| | || | ||
Sbjct 419 TATACTGGACTTCTCGGTATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAG-TTTG 477
Query 482 TACTCCAAAGAAAGGAGATACTGTGTT-TGTGTCGGCTGCATCTGGCGCGGTTGGTCAGC 540
| | |||||||||||||| || || || |||||| ||||||||||| |||||||||||||
Sbjct 478 TTCCCCAAAGAAAGGAGAGACGGT-TTATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGC 536
Query 541 TTGTAGGACAATTTGCTAAGTTGATGGGTTGTTATGTTGTTGGAAGCGCTGGGAGTAAAG 600
|||| |||||| |||||||| ||||||| |||||||||||||||||||| || || ||||
Sbjct 537 TTGTGGGACAACTTGCTAAGATGATGGGCTGTTATGTTGTTGGAAGCGCCGGTAGCAAAG 596
Query 601 AAAAGGTTGATCTCCTCAAGAACAAGTTTGGATTCGATGATGCCTTCAACTACAAGGAAG 660
||||||||||||||||||||| ||||||||| || |||||||| || |||||||||||||
Sbjct 597 AAAAGGTTGATCTCCTCAAGACCAAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAG 656
Query 661 AACACA-ATCTTATTGGTGCCCTAAAAAGGTGTTTCCCTGAAGGCATTGACATATACTTT 719
||| || | |||| || |||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 657 AAC-CAGACCTTAGTGCTGCCCTCAAAAGGTGTTTCCCCAAAGGCATAGACATATACTTT 715
Query 720 GAGAACGTAGGAGGCAAGATGCTGGATGCAGTGATCTTAAACATGAGACC-ACACGGCCG 778
||||||||||||||||| ||||| ||||||||| |||||||||||| ||| |||||| ||
Sbjct 716 GAGAACGTAGGAGGCAAAATGCTAGATGCAGTGCTCTTAAACATGA-ACCCACACGGACG 774
Query 779 TATCGCGGCATGTGGGATGATCTCACAGTACAATCT-GAAGAATCCG-GAAGGTATATAC 836
|||||| | ||||| |||||||||||||||||||| ||| || || |||||| || ||
Sbjct 775 TATCGCTGTGTGTGGAATGATCTCACAGTACAATCTTGAA-AA-CCAAGAAGGTGTACAC 832
Query 837 GGCCTCTCGCT-CATTA-CATACAAACGAATCCGTATTGAAGGGTT--CAACTGTTTCGA 892
||| || | ||| | | |||||||||||||| ||| |||| || | ||||| ||
Sbjct 833 AACCTATC-CAACATAATC-TACAAACGAATCCGCATTCAAGGCTTTGCGG-TGTTT-GA 888
Query 893 TTACTTCCACAAATACTCGGAGTTCTTGGAGTTTGTGGTTCCGTATATAAAAGAAGGGAA 952
||||| | |||||||||| ||||||||||||||||| |||||| || |||||||||||
Sbjct 889 TTACTACGACAAATACTCAAAGTTCTTGGAGTTTGTGCTTCCGTGCATTAAAGAAGGGAA 948
Query 953 GATAAAGTATGTGGAAGATGTTGCTGATGGACTCGAGAGTGCTCCTGCTGCTCTCGTTGG 1012
||||| ||||||||||||||| |||||||| || |||| | ||||| ||||| || ||
Sbjct 949 GATAACGTATGTGGAAGATGTAGCTGATGGGCTTGAGAAAGGTCCTGAAGCTCTTGTGGG 1008
Query 1013 ACTCTTTCACGGTAAAAACGTCGGGAAACAACTTGTCGTGGTT 1055
|||||| || ||||| ||||| ||||||||| ||||||| |||
Sbjct 1009 ACTCTTCCATGGTAAGAACGTTGGGAAACAAGTTGTCGTTGTT 1051
> Ahg941200 jgi|Araly1|941200|scaffold_601744.1
Length=1078
Score = 761 bits (412), Expect = 0.0
Identities = 753/914 (82%), Gaps = 38/914 (4%)
Strand=Plus/Plus
Query 154 TGGTGAAGAATCTCTACTTGTCTTGTGATCCTTACATGCGAAATCGTATGAGGAAACCTG 213
||||||||||||||||| |||| || |||||||||||||| | ||| ||| |||||||||
Sbjct 145 TGGTGAAGAATCTCTACCTGTCATGCGATCCTTACATGCGTATTCGCATGGGGAAACCTG 204
Query 214 AT-CCTCTGAGC-CCTGCTAC-TGCTC-AGTCCTT-CACTCCCGGCAAGCCTATCTCAGG 268
|| |||| | | ||||| | ||||| || ||| | |||||||| |||| |||| ||
Sbjct 205 ATCCCTC-CA-CTGCTGCT-CTTGCTCAAG--CTTACGCTCCCGGCCAGCCAATCTTTGG 259
Query 269 GTTTGGAGTGTCTAAAGTGATAGATTCTGGACACT-CAGATTACGAAG-AAGGTGACTTA 326
|| ||||||||||| ||| || || |||||||| | | |||||| ||| ||||||| |||
Sbjct 260 GTATGGAGTGTCTAGAGTTATTGAATCTGGACA-TCCTGATTAC-AAGAAAGGTGATTTA 317
Query 327 ATTTGGGGAGCAGTAGGATGGGAAGAGTACAGTGTTATTACACCAATTCCTAATC-TTCA 385
| |||||| ||| |||||||| ||||| ||||||||||| ||||| || | | | ||
Sbjct 318 CTCTGGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACTCCAATGACTCA-CATGCA 376
Query 386 CTTCAAGATCCATCATACCAATTTTCCTTTATCTTACTACACAGGACTTCTTGGTATGCC 445
||||||||||| |||||| || |||| |||||||||||| | |||||||| ||||||||
Sbjct 377 TTTCAAGATCCAACATACCGATGTTCCATTATCTTACTACGCTGGACTTCTCGGTATGCC 436
Query 446 TGGTATGACCGCGTATGTTGGGTTTTACG-AGATATGTACTCCAAAGAAAGGAGATACTG 504
|||||||| || |||| ||||||||| | || | ||| | |||||||||||||| || |
Sbjct 437 CGGTATGACTGCCTATGCTGGGTTTTATGAAG-TTTGTTCCCCAAAGAAAGGAGAGACGG 495
Query 505 TGTT-TGTGTCGGCTGCATCTGGCGCGGTTGGTCAGCTTGTAGGACAATTTGCTAAGTTG 563
| || |||||| ||||||||||| || |||||||||||||| ||||||||||||||| ||
Sbjct 496 T-TTATGTGTCAGCTGCATCTGGTGCAGTTGGTCAGCTTGTGGGACAATTTGCTAAGATG 554
Query 564 ATGGGTTGTTATGTTGTTGGAAGCGCTGGGAGTAAAGAAAAGGTTGATCTCCTCAAGAAC 623
||||| ||||||||||||||||| || || | |||||||| |||||||||||||||| |
Sbjct 555 ATGGGCTGTTATGTTGTTGGAAGTGCCGGTACCAAAGAAAAAGTTGATCTCCTCAAGACC 614
Query 624 AAGTTTGGATTCGATGATGCCTTCAACTACAAGGAAGAACACA-ATCTTATTGGTGCCCT 682
||||||||||| |||||||| || |||||||||||||||| || | |||| || ||||||
Sbjct 615 AAGTTTGGATTTGATGATGCATTTAACTACAAGGAAGAAC-CAGACCTTACTGCTGCCCT 673
Query 683 AAAAAGGTG-TTTCCCTGAAGGCATTGACATATACTTTGAGAACGTAGGAGGCAAGATGC 741
|||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 674 CAAAAGGTGTTTTCCC-AAAGGCATCGACATATACTTTGAGAACGTAGGAGGCAAAATGC 732
Query 742 TGGATGCAGTGATCTTAAACATGAGACC-ACACGGCCGTATCGCGG-CATGTGGGATGAT 799
| || |||||| |||||||||||| ||| || ||| ||||| || | | ||||| |||||
Sbjct 733 TAGACGCAGTGCTCTTAAACATGA-ACCCACTCGGGCGTATAGCTGTC-TGTGGAATGAT 790
Query 800 CTCACAGTACAATCT-GAAGAATCCG-GAAGGTATATACGGCCTCTCGCT-CATTA-CAT 855
||||||||||||||| ||| || || |||||| || || ||| || | ||| | | |
Sbjct 791 CTCACAGTACAATCTTGAA-AA-CCAAGAAGGTGTACACAACCTATC-CAACATAATC-T 846
Query 856 ACAAACGAATCCGTATTGAAGGGTTCA-ACTGTTTCGATTACTTCCACAAATACTCGGAG 914
||||||||||||| ||| ||||||| | | || |||| || | |||||||||| ||
Sbjct 847 ACAAACGAATCCGCATTCAAGGGTTTGTAGTCCTT-GATTTCTACGACAAATACTCAAAG 905
Query 915 TTCTTGGAGTTTGTGGTTCCGTATATAAAAGAAGGGAAGATAAAGTATGTGGAAGATGTT 974
||||||||||||||| |||||| || |||||||||||||| | ||| |||||||||||
Sbjct 906 TTCTTGGAGTTTGTGCTTCCGTGCATCAAAGAAGGGAAGATCACGTACGTGGAAGATGTG 965
Query 975 GCTGATGGACTCGAGAGTGCTCCTGCTGCTCTCGTTGGACTCTTTCACGGTAAAAACGTC 1034
|||||||| || |||| ||||||| ||||| || |||||||| || ||||| |||||
Sbjct 966 GCTGATGGGCTTGAGAAAGCTCCTGAAGCTCTTGTGGGACTCTTCCATGGTAAGAACGTT 1025
Query 1035 GGGAAACAACTTGT 1048
||||||||| ||||
Sbjct 1026 GGGAAACAAGTTGT 1039
> Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248
Length=1056
Score = 654 bits (354), Expect = 0.0
Identities = 796/1005 (79%), Gaps = 47/1005 (5%)
Strand=Plus/Plus
Query 63 GATTACGTAACCGGTTTCGCCAAGGAATCCGACCTTGTAATCACCTCCACCACCATCGAT 122
|||||||| ||||||||| |||||||||| ||||| | ||||| |||||||||||
Sbjct 55 GATTACGTCACCGGTTTCCCCAAGGAATCAGACCTCATCTTCACCGATTCCACCATCGAT 114
Query 123 CTT-AGGGTGCTAAAGGGATCTATGACGGCGT-TGGTGAAGAATCTCTACTTGTCTTGTG 180
|| | | | | ||||||| | ||||| | ||||||||||||||||||||||||| |
Sbjct 115 -TTAAAGATTCCGGAGGGATCGAAGACGG-TTCTGGTGAAGAATCTCTACTTGTCTTGCG 172
Query 181 ATCCTTACATGCGAAATCGTATGAGGAA-ACCTGATCCTCTGAGCCCTGCT--ACT-GCT 236
||||||||||||| | ||| ||| |||| || ||||| | | | ||||| || |||
Sbjct 173 ATCCTTACATGCGCATTCGCATG-GGAATTCCCGATCC-C-G-GTACTGCTGCGCTCGCT 228
Query 237 -CAGTCCTT-CACTCCCGGCAAGCCTATCTCA-GGGTTTGGAGTGTCTAAAGTGATAGAT 293
|| |||| || ||||||| |||| || | | |||||| |||||| ||||||||||||
Sbjct 229 CCA--CCTTACATTCCCGGCGAGCCAAT-TTATGGGTTTTCAGTGTCAAAAGTGATAGAT 285
Query 294 TCTGGACACT-CAGATTACGAAGAA-GGTGACTTAATTTGGGGAGCAGTAGGATGGGAAG 351
||||| || | |||||||| || || || |||||| |||||||| ||| ||||||| |
Sbjct 286 TCTGGGCA-TCCAGATTAC-AAAAAGGGAGACTTACTTTGGGGATTAGTTGGATGGGGGG 343
Query 352 AGTACAGTGTTATTACACCA-ATTCCTAATCTTCAC-TT-CAAGATCCATCATACCAATT 408
|||||||| |||| || ||| | | | | ||||| || ||||||||| || ||| ||
Sbjct 344 AGTACAGTCTTATAACTCCAGA-T--T--T-TTCACATTACAAGATCCAACACACCGATG 397
Query 409 TTCCTTTATCTTACTACACAGGACTTCTTGGTATGCCTGGTATGACCGCGTATGTTGGGT 468
|||| ||||| |||||||| |||||||| ||||||||||||||||| || |||| |||||
Sbjct 398 TTCCGTTATCCTACTACACTGGACTTCTCGGTATGCCTGGTATGACTGCCTATGCTGGGT 457
Query 469 TTTACGAGATATGTACTCCAAAGAAAGGAGATACTGTGTTTGTGTCGGCTGCATCTGGCG 528
|||| || || ||| |||| ||||||||||| ||||| || ||||| |||||||| || |
Sbjct 458 TTTATGAAATCTGTTCTCCTAAGAAAGGAGAAACTGTCTTCGTGTCAGCTGCATCGGGTG 517
Query 529 CGGTTGGTCAGCTTGTAGGACAATTTGCTAAG-TTGATGGGTTGTTATGTTGTTGGAAGC 587
| ||||||||||| || ||||||||||| ||| || ||||| || ||||| ||||||||
Sbjct 518 CAGTTGGTCAGCTCGTGGGACAATTTGCAAAGATT-ATGGGCTGCTATGTCGTTGGAAGT 576
Query 588 GCTGGGAGTAAAGAAAAGGTTGATCTCCTCAAGAACAAGTTTGGATTCGATGATGCCTTC 647
|| || ||||| |||||||||||||| |||||||||||||| || || ||||| || |||
Sbjct 577 GCAGGCAGTAATGAAAAGGTTGATCTTCTCAAGAACAAGTTCGGGTTTGATGACGCATTC 636
Query 648 AACTACAAGGAAGAACACA-ATCTTATTGGTGCCCTAAAAAGGTGTTTCCCTGAAGGCAT 706
|| ||||| |||| | | | | |||| || |||||| || ||||||||||| ||||| ||
Sbjct 637 AATTACAAAGAAG-AGAAAGACCTTAATGTTGCCCTGAAGAGGTGTTTCCCGGAAGGAAT 695
Query 707 TGACATATACTTTGAGAACGTAGGAGGCAAGATGCTGGATGCAGTGATCTTAAACATGAG 766
||||||||||||||||||||||||||||| ||||| || |||||| || |||||||||
Sbjct 696 CGACATATACTTTGAGAACGTAGGAGGCAAAATGCTAGACGCAGTGCTCCTAAACATGA- 754
Query 767 ACC-ACACGGCCGTATCGCGGCATGTGGGATGATCTCACAGTACAATCT-GAAGAATCC- 823
| | ||||||||||||||| | |||||| ||||||||||||||||| || || || ||
Sbjct 755 AGCTACACGGCCGTATCGCAGTATGTGGTATGATCTCACAGTACAACCTTGAGGA--CCA 812
Query 824 GGAAGGTATATACGGCCTCTCGCTCATTA-CATACAAACGAATCCGTATTGAAGGGTTCA 882
||||||| || || ||| | | | | | ||||| || || || ||| ||||||||
Sbjct 813 GGAAGGTGTACACAACCTAGCAAACGTGATC-TACAAGCGGATTCGGATTCAAGGGTTCG 871
Query 883 AC-TGTTTCGATTACTTCCACAAATACTCGGAGTTCTTGGAGTTTGTGGTTCCGTATATA 941
||| | |||||||| ||||| ||| ||||| |||| |||||| |||||||||||
Sbjct 872 TGGTGTCT-GATTACTTTGACAAACACTTAAAGTTCCTGGATTTTGTGCTTCCGTATATA 930
Query 942 AAAGAAGGGAAGATAAAGTATGTGGAAGATGTTGCTGATGGACTCGAGAGTGCTCCTGCT 1001
| |||||| ||||||| ||||| || ||| | | ||| ||||| |||| | ||| |
Sbjct 931 AGAGAAGGAAAGATAACTTATGTTGAGGATATAGTTGAAGGACTTGAGAACGGACCTTCA 990
Query 1002 GCTCT-CGTTGGACTCTTTCACGGTAAAAACGTCGGGAAACAACT 1045
||| | | ||||||| || || ||||| |||||||| ||||||||
Sbjct 991 GCTTTGC-TTGGACTGTTCCATGGTAAGAACGTCGGCAAACAACT 1034
> Ahg925647 jgi|Araly1|925647|scaffold_201208.1
Length=1093
Score = 158 bits (85), Expect = 1e-37
Identities = 260/344 (76%), Gaps = 14/344 (4%)
Strand=Plus/Plus
Query 429 GGACTTCTTGGTATGCCTGG-TATGACCGCGTATGTTGGGTTTTACGAGATATGTACTCC 487
||||||||||| ||| |||| | | || || |||| |||||| | ||||||||| |||
Sbjct 432 GGACTTCTTGGGATGGCTGGATTT-ACAGCATATGCAGGGTTTAATGAGATATGTTGTCC 490
Query 488 AAAGAAAGGAGATACTGTGTTTGTGTCGGCTGCATCTGGCGCGGTTGGTCAGCTTGTAGG 547
||||||||||| | ||| ||||| || || |||||||| || ||||| || ||||| ||
Sbjct 491 TAAGAAAGGAGAGAGTGTTTTTGTATCTGCAGCATCTGGAGCAGTTGGACAACTTGTTGG 550
Query 548 ACAATTTGCTAAGTTG-ATGGGTTGTTATGTTGTTGGAAGCGCTGGGAGTAAAG-AAAAG 605
|| | ||||| ||| | || | | |||||||||| ||||| || ||||| | |||||
Sbjct 551 TCAGCTAGCTAAATTGCACGGCT-GCCATGTTGTTGGGAGCGCCGGTAGTAA-GCAAAAG 608
Query 606 GTTGATCTCCT-CAAGAACAAGTTTGGATTCGATGATGCCTTCAACTACAAGGAAGAA-C 663
||||| ||||| ||| ||| || |||| || ||| | ||||| |||||||||||||| |
Sbjct 609 GTTGAGCTCCTTCAA-AACGAGCTTGGGTTTGATAAAGCCTTTAACTACAAGGAAGAGGC 667
Query 664 ACAATCTT-ATTGGTGCCCTAAAAAGGTGTTTCCCTGAAGGCATTGACATATACTTTGAG 722
| |||| || | ||| | || |||| ||||| || || || || || ||||| ||
Sbjct 668 TGA-TCTTGAT-GCTGCTTTGAAGAGGTACTTCCCGGAGGGGATCGATATTTACTTCGAC 725
Query 723 AACGTAGGAGGCAAG-ATGCTGGATGCAGTGATCTTAAACATGA 765
|| || ||||| | ||||| ||||||| | || | |||||||
Sbjct 726 AATGTGGGAGG-ATCCATGCTTGATGCAGCGCTCCTCAACATGA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5