BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16970.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941198 jgi|Araly1|941198|scaffold_601742.1 1646 0.0
Ahg941200 jgi|Araly1|941200|scaffold_601744.1 1441 0.0
Ahg941199 jgi|Araly1|941199|scaffold_601743.1 1428 0.0
Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248 798 0.0
> Ahg941198 jgi|Araly1|941198|scaffold_601742.1
Length=1083
Score = 1646 bits (891), Expect = 0.0
Identities = 1006/1063 (95%), Gaps = 2/1063 (0%)
Strand=Plus/Plus
Query 71 AACGATGACGGCGACGAACAAGCAAGTCATATTGAAAGACTACGTGAGTGGTTTCCCTAC 130
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 22 AACGATGACGGCGACGAACAAGCAGGTCATATTGAAAGACTACGTGAATGGTTTCCCTAA 81
Query 131 GGAATCCGATTTCGATTTCACTACCACCACCGTCGAACTTAGGGTTCCGGAAGGTACTAA 190
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 82 GGAATCCGATTTCGATTTCACAACCACCACCGTCGAACTTAAGGTTCCGGAAGGTTCTAA 141
Query 191 CTCTGTTCTAGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGAATTCGCATGGG 250
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 142 CTCGGTTCTGGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGGATTCGCATGGG 201
Query 251 GAAACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAATCCA 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GAAACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAATCCA 261
Query 311 AGGGTATGGAGTGTCTAGAATAATAGAATCTGGACATCCAGATTACAAGAAAGGAGATTT 370
|||||||| |||||| ||| | |||||||||||||||||||||||||| |||||||| ||
Sbjct 262 AGGGTATGTAGTGTCCAGAGTGATAGAATCTGGACATCCAGATTACAAAAAAGGAGACTT 321
Query 371 ACTCTGGGGTATAGTTGCATGGGAGGAGTACAGTGTTATCACTCCAATGA-CTCACGCGC 429
||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||
Sbjct 322 ACTCTGGGGTATAGTTGCATGGGAGGAGTACTCTGTTATCACTCCAA-CACCTCACGTGC 380
Query 430 ATTTCAAGATCCAACATACTGATGTTCCATTATCTTATTACACTGGACTTTTAGGTATGC 489
||||||||||||| ||||| ||||||||||||||||| |||||||||||| | |||||||
Sbjct 381 ATTTCAAGATCCAGCATACCGATGTTCCATTATCTTACTACACTGGACTTCTCGGTATGC 440
Query 490 CTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGGAAGGAGAGACAG 549
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 441 CCGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGACAG 500
Query 550 TTTATGTGTCAGCTGCATCTGGTGCTGTTGGTCAGCTTGTGGGACAACTTGCTAAGATGA 609
||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 501 TTTATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGGCAATTTGCTAAGATGT 560
Query 610 TGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAGAAGGTTGATCTTCTGAAGACCA 669
||||||| ||||||||||||||||| || || ||||| ||||||||||| || |||||||
Sbjct 561 TGGGCTGCTATGTTGTTGGAAGCGCCGGTAGCAAAGAAAAGGTTGATCTCCTCAAGACCA 620
Query 670 AGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTACTGCTGCCCTAA 729
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 621 AGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAACCTGACCTTACTGCTGCCCTCA 680
Query 730 AAAGGTGTTTCCCTAATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAAATGCTAG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AAAGGTGTTTCCCTAATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAAATGCTAG 740
Query 790 ATGCAGTGCTTGTGAACATGAACATGCACGGGCGTATCGCTGTCTGTGGAATGATCTCAC 849
| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 741 ACGCAGTGCTCGTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTCAC 800
Query 850 AGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCTACAAAAGAA 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 801 AGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCTACAAACGAA 860
Query 910 TCCGCATTCAAGGCTTTGTAGTGTCTGATTTCTACGACAAATACTCAAAGTTCTTGGAGT 969
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 861 TCCGCATTCAAGGCTTTGTAGTTTCTGATTTCTATGACAAATACTCAAAGTTCTTGGAGT 920
Query 970 TTGTGCTTCCCCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAGCTGATGGGC 1029
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TTGTGCTTCCGCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAGCTGATGGGC 980
Query 1030 TTGAGAAAGCTCCCGAAGCTCTTGTGGGACTCTTCCATGGTAAGAATGTTGGGAAACAAG 1089
| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 981 TCGAGAAAGCTCCTGAAGCTCTCGTTGGACTCTTCCATGGTAAGAATGTTGGGAAACAAG 1040
Query 1090 TTGTTGTTGTTGCTCGTGAGTGAAACTATGTTTGATACTTGTA 1132
|||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1041 TTGTTGTTATTGCTCGTGAGTGAAACAATGTTTGATACTTGTA 1083
> Ahg941200 jgi|Araly1|941200|scaffold_601744.1
Length=1078
Score = 1441 bits (780), Expect = 0.0
Identities = 971/1064 (91%), Gaps = 10/1064 (1%)
Strand=Plus/Plus
Query 65 AGAATCAACGATGACGGCGACGAACAAGCAAGTCATATTGAAAGACTACGTGAGTGGTTT 124
|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 11 AGAAACAACGATGACGGCGACAAACAAGCAGGTCATATTGAAAGACTACGTGAGTGGTTT 70
Query 125 CCCTACGGAATCCGATTTCGATTTCACTACCACCACCGTCGAACTTAGGGTTCC-GGAAG 183
||||| ||||||| |||||||||||| |||| |||||||||| ||| |||||| ||| |
Sbjct 71 CCCTAAGGAATCCAATTTCGATTTCAAGACCAACACCGTCGAATTTAAGGTTCCGGGAGG 130
Query 184 GTACTAACTCTGTTCTAGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGAATTC 243
|| |||| || ||||| ||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 131 GT-CTAATTCAGTTCTGGTGAAGAATCTCTACCTGTCATGCGATCCTTACATGCGTATTC 189
Query 244 GCATGGGGAAACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACACTCCCGGCCAGC 303
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 190 GCATGGGGAAACCTGATCCCTCCACTGCTGCTCTTGCTCAAGCTTACGCTCCCGGCCAGC 249
Query 304 CAATCCAAGGGTATGGAGTGTCTAGAATAATAGAATCTGGACATCCAGATTACAAGAAAG 363
||||| |||||||||||||||||| | || |||||||||||||| |||||||||||||
Sbjct 250 CAATCTTTGGGTATGGAGTGTCTAGAGTTATTGAATCTGGACATCCTGATTACAAGAAAG 309
Query 364 GAGATTTACTCTGGGGTATAGTTGCATGGGAGGAGTACAGTGTTATCACTCCAATGACTC 423
| |||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 310 GTGATTTACTCTGGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACTCCAATGACTC 369
Query 424 ACGCGCATTTCAAGATCCAACATACTGATGTTCCATTATCTTATTACACTGGACTTTTAG 483
|| ||||||||||||||||||||| ||||||||||||||||| ||| |||||||| | |
Sbjct 370 ACATGCATTTCAAGATCCAACATACCGATGTTCCATTATCTTACTACGCTGGACTTCTCG 429
Query 484 GTATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGGAAGGAG 543
||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 430 GTATGCCCGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCCCCAAAGAAAGGAG 489
Query 544 AGACAGTTTATGTGTCAGCTGCATCTGGTGCTGTTGGTCAGCTTGTGGGACAACTTGCTA 603
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 490 AGACGGTTTATGTGTCAGCTGCATCTGGTGCAGTTGGTCAGCTTGTGGGACAATTTGCTA 549
Query 604 AGATGATGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAGAAGGTTGATCTTCTGA 663
|||||||||||||||||||||||||||| || || | ||||| || |||||||| || |
Sbjct 550 AGATGATGGGCTGTTATGTTGTTGGAAGTGCCGGTACCAAAGAAAAAGTTGATCTCCTCA 609
Query 664 AGACCAAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTACTGCTG 723
||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 610 AGACCAAGTTTGGATTTGATGATGCATTTAACTACAAGGAAGAACCAGACCTTACTGCTG 669
Query 724 CCCTAAAAAGGTG-TTTCCCTAATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAA 782
|||| |||||||| |||||| || ||||| ||||||||||||||||| ||||||||||||
Sbjct 670 CCCTCAAAAGGTGTTTTCCC-AAAGGCATCGACATATACTTTGAGAACGTAGGAGGCAAA 728
Query 783 ATGCTAGATGCAGTGCT-TGTGAACATGAACATGCACGGGCGTATCGCTGTCTGTGGAAT 841
|||||||| |||||||| | | ||||||||| | ||||||||| ||||||||||||||
Sbjct 729 ATGCTAGACGCAGTGCTCT-TAAACATGAACCCACTCGGGCGTATAGCTGTCTGTGGAAT 787
Query 842 GATCTCACAGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCTA 901
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 788 GATCTCACAGTACAATCTTGAAAACCAAGAAGGTGTACACAACCTATCCAACATAATCTA 847
Query 902 CAAAAGAATCCGCATTCAAGGCTTTGTAGTGTC-TGATTTCTACGACAAATACTCAAAGT 960
|||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 848 CAAACGAATCCGCATTCAAGGGTTTGTAGT-CCTTGATTTCTACGACAAATACTCAAAGT 906
Query 961 TCTTGGAGTTTGTGCTTCCCCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAG 1020
||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||| |
Sbjct 907 TCTTGGAGTTTGTGCTTCCGTGCATCAAAGAAGGGAAGATCACGTACGTGGAAGATGTGG 966
Query 1021 CTGATGGGCTTGAGAAAGCTCCCGAAGCTCTTGTGGGACTCTTCCATGGTAAGAATGTTG 1080
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 967 CTGATGGGCTTGAGAAAGCTCCTGAAGCTCTTGTGGGACTCTTCCATGGTAAGAACGTTG 1026
Query 1081 GGAAACAAGTTGTTGTTGTTGCTCGTGAGTGAA-ACTATGTTTG 1123
||||||||||||||||| ||||||||||||||| | ||| ||||
Sbjct 1027 GGAAACAAGTTGTTGTTATTGCTCGTGAGTGAATA-TATTTTTG 1069
> Ahg941199 jgi|Araly1|941199|scaffold_601743.1
Length=1083
Score = 1428 bits (773), Expect = 0.0
Identities = 957/1046 (91%), Gaps = 11/1046 (1%)
Strand=Plus/Plus
Query 72 ACGATGACGGCGACGAACAAGCAAGTCATATTGAAAGACTACGTGAGTGGTTTCCCTACG 131
|||| |||||||||||||||||| || | ||||||||||||||||||||||||||||| |
Sbjct 26 ACGACGACGGCGACGAACAAGCAGGTGACATTGAAAGACTACGTGAGTGGTTTCCCTAAG 85
Query 132 GAATCCGATTTCGATTTCACTACCACCACCGTCGAACTTAGGGTTCCGGAAGGTACTAAC 191
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 86 GAATCCGATTTCGATTTCACCACCACCACCGTCGAACTTAAGGTTCCGGAAGGTTCTAAC 145
Query 192 TCTGTTCTAGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGAATTCGCATGGGG 251
|| ||||| ||||| ||||||||| |||||||||||||||||||| | | ||||||| |
Sbjct 146 TCGGTTCTGGTGAAAAATCTCTACCTGTCATGCGATCCTTACATGCGGACTCGCATGAGC 205
Query 252 AAACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAATC-CA 310
|||||| | || |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 206 AAACCTAAACCATCCA---CTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAATCTC- 261
Query 311 AGGGTATGGAGTGTCTAGAATAATAGAATCTGGACATCCAGATTA-CAAGAAAGGAGATT 369
|||||||||||||||||| | |||||||| |||||||||||||| ||| ||||| ||||
Sbjct 262 TGGGTATGGAGTGTCTAGAGTGATAGAATCCGGACATCCAGATTACCAA-AAAGGCGATT 320
Query 370 TACTCTGGGGTATAGTTGCATGGGAGGAGTACAGTGTTATCACTCCAATGA-CTCACGCG 428
|||||||||| ||||||| ||||||||||||||||||||||||||||| | |||| |
Sbjct 321 TACTCTGGGGGATAGTTGGATGGGAGGAGTACAGTGTTATCACTCCAA-CACCTCAAGTT 379
Query 429 CATTTCAAGATCCAACATACTGATGTTCCATTATCTTATTACACTGGACTTTTAGGTATG 488
|||||||||||||| ||||| |||||||||||||| || || ||||||||| | ||||||
Sbjct 380 CATTTCAAGATCCAGCATACCGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATG 439
Query 489 CCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGGAAGGAGAGACA 548
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 440 CCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCCCCAAAGAAAGGAGAGACG 499
Query 549 GTTTATGTGTCAGCTGCATCTGGTGCTGTTGGTCAGCTTGTGGGACAACTTGCTAAGATG 608
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 500 GTTTATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAACTTGCTAAGATG 559
Query 609 ATGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAGAAGGTTGATCTTCTGAAGACC 668
|||||||||||||||||||||||||| || || ||||| ||||||||||| || ||||||
Sbjct 560 ATGGGCTGTTATGTTGTTGGAAGCGCCGGTAGCAAAGAAAAGGTTGATCTCCTCAAGACC 619
Query 669 AAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTACTGCTGCCCTA 728
||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 620 AAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAACCAGACCTTAGTGCTGCCCTC 679
Query 729 AAAAGGTGTTTCCCTAATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAAATGCTA 788
|||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 680 AAAAGGTGTTTCCCCAAAGGCATAGACATATACTTTGAGAACGTAGGAGGCAAAATGCTA 739
Query 789 GATGCAGTGCT-TGTGAACATGAACATGCACGGGCGTATCGCTGTCTGTGGAATGATCTC 847
||||||||||| | | ||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 740 GATGCAGTGCTCT-TAAACATGAACCCACACGGACGTATCGCTGTGTGTGGAATGATCTC 798
Query 848 ACAGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCTACAAAAG 907
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 799 ACAGTACAATCTTGAAAACCAAGAAGGTGTACACAACCTATCCAACATAATCTACAAACG 858
Query 908 AATCCGCATTCAAGGCTTTGTAGTGTCTGATTTCTACGACAAATACTCAAAGTTCTTGGA 967
|||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 859 AATCCGCATTCAAGGCTTTGCGGTGTTTGATTACTACGACAAATACTCAAAGTTCTTGGA 918
Query 968 GTTTGTGCTTCCCCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAGCTGATGG 1027
|||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 919 GTTTGTGCTTCCGTGCATTAAAGAAGGGAAGATAACGTATGTGGAAGATGTAGCTGATGG 978
Query 1028 GCTTGAGAAAGCTCCCGAAGCTCTTGTGGGACTCTTCCATGGTAAGAATGTTGGGAAACA 1087
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 979 GCTTGAGAAAGGTCCTGAAGCTCTTGTGGGACTCTTCCATGGTAAGAACGTTGGGAAACA 1038
Query 1088 AGTTGTTGTTGTTGCTCGTGAGTGAA 1113
|||||| |||||||||||||||||||
Sbjct 1039 AGTTGTCGTTGTTGCTCGTGAGTGAA 1064
> Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248
Length=1056
Score = 798 bits (432), Expect = 0.0
Identities = 835/1029 (81%), Gaps = 29/1029 (3%)
Strand=Plus/Plus
Query 73 CGATGACGGCGACGAACAAGCAAGTCATATTGAAAGACTACGTGAGTGGTTTCCCTACGG 132
||| ||||| ||| |||||||| || ||| || ||| ||||| | |||||||| | ||
Sbjct 20 CGACGACGGTGACCAACAAGCAGGTGATACTGCGAGATTACGTCACCGGTTTCCCCAAGG 79
Query 133 AATCCGATTTCGAT-TTCA-CTACCACCACCGTCGAACTT-AGGGTTCCGGAAGGTA-CT 188
|||| || || || |||| | | ||||| ||| | || | | |||||| ||| | |
Sbjct 80 AATCAGACCTC-ATCTTCACCGA-TTCCACCATCG-ATTTAAAGATTCCGG-AGGGATCG 135
Query 189 AACTCTGTTCTAGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGAATTCGCATG 248
|| | ||||| |||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 136 AAGACGGTTCTGGTGAAGAATCTCTACTTGTCTTGCGATCCTTACATGCGCATTCGCAT- 194
Query 249 GGGAA-ACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAAT 307
||||| || ||||| |||||||| || |||| | |||||| ||||||| |||||||
Sbjct 195 GGGAATTCCCGATCCCGGTACTGCTGCGCTCGCTCCACCTTACATTCCCGGCGAGCCAAT 254
Query 308 CCAAGGGTATGGAGTGTCTAGAA-TAATAGAATCTGGACATCCAGATTACAAGAAA-GGA 365
| |||| | |||||| | || | ||||| ||||| |||||||||||||| ||| |||
Sbjct 255 TTATGGGTTTTCAGTGTC-AAAAGTGATAGATTCTGGGCATCCAGATTACAA-AAAGGGA 312
Query 366 GATTTACTCTGGGGTA-TAGTTGCATGGGAGGAGTACAGTGTTATCACTCCAATGACTCA 424
|| ||||| ||||| | |||||| ||||| |||||||||| |||| ||||| | || |
Sbjct 313 GACTTACTTTGGGG-ATTAGTTGGATGGGGGGAGTACAGTCTTATAACTCC-A-GA-TTT 368
Query 425 CGCGCATTTCAAGATCCAACATACTGATGTTCCATTATCTTATTACACTGGACTTTTAGG 484
| |||| |||||||||||| || |||||||| ||||| || |||||||||||| | ||
Sbjct 369 TTCACATTACAAGATCCAACACACCGATGTTCCGTTATCCTACTACACTGGACTTCTCGG 428
Query 485 TATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGGAAGGAGA 544
||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||
Sbjct 429 TATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAATCTGTTCTCCTAAGAAAGGAGA 488
Query 545 GACAGT-TTATGTGTCAGCTGCATCTGGTGCTGTTGGTCAGCTTGTGGGACAACTTGCTA 603
|| || || |||||||||||||| ||||| ||||||||||| ||||||||| |||| |
Sbjct 489 AACTGTCTTC-GTGTCAGCTGCATCGGGTGCAGTTGGTCAGCTCGTGGGACAATTTGCAA 547
Query 604 AGATGATGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAGAAGGTTGATCTTCTGA 663
|||| |||||||| ||||| |||||||| || || ||||| || |||||||||||||| |
Sbjct 548 AGATTATGGGCTGCTATGTCGTTGGAAGTGCAGGCAGTAATGAAAAGGTTGATCTTCTCA 607
Query 664 AGACCAAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGA-ATCTGACCTTACTGCT 722
||| |||||| ||||||||||| ||||| || ||||| ||||| | ||||||| || |
Sbjct 608 AGAACAAGTTCGGGTTTGATGACGCATTCAATTACAAAGAAGAGAAA-GACCTTAATGTT 666
Query 723 GCCCTAAAAAGGTGTTTCCCT-AATGGCATTGACATATACTTTGAGAATGTAGGAGGCAA 781
||||| || ||||||||||| || || || ||||||||||||||||| |||||||||||
Sbjct 667 GCCCTGAAGAGGTGTTTCCCGGAA-GGAATCGACATATACTTTGAGAACGTAGGAGGCAA 725
Query 782 AATGCTAGATGCAGTGCTTGTGAACATGAA-CATGCACGGGCGTATCGCTGTCTGTGGAA 840
||||||||| |||||||| | |||||||| | | ||||| |||||||| || ||||| |
Sbjct 726 AATGCTAGACGCAGTGCTCCTAAACATGAAGC-TACACGGCCGTATCGCAGTATGTGGTA 784
Query 841 TGATCTCACAGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCT 900
|||||||||||||||| |||||| ||||||||||||||||||||||| | ||| | ||||
Sbjct 785 TGATCTCACAGTACAACCTTGAGGACCAGGAAGGTGTACACAACCTAGCAAACGTGATCT 844
Query 901 ACAAAAGAATCCGCATTCAAGGCTTTGTAGTGTCTGATTTCTACGACAAATACTCAAAGT 960
|||| | || || |||||||| || || |||||||||| || |||||| ||| |||||
Sbjct 845 ACAAGCGGATTCGGATTCAAGGGTTCGTGGTGTCTGATTACTTTGACAAACACTTAAAGT 904
Query 961 TCTTGGAGTTTGTGCTTCCCCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAG 1020
|| |||| ||||||||||| | || |||||||| |||||||| || || || ||| |||
Sbjct 905 TCCTGGATTTTGTGCTTCCGTATATAAGAGAAGGAAAGATAACTTATGTTGAGGATATAG 964
Query 1021 CTGATGGGCTTGAGAAAGCTCCCGAAGCTCTTG-TGGGACTCTTCCATGGTAAGAATGTT 1079
||| || |||||||| | || |||| ||| | ||||| |||||||||||||| ||
Sbjct 965 TTGAAGGACTTGAGAACGGACCTTCAGCT-TTGCTTGGACTGTTCCATGGTAAGAACGTC 1023
Query 1080 GGGAAACAA 1088
|| ||||||
Sbjct 1024 GGCAAACAA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5