BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16990.1
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941199 jgi|Araly1|941199|scaffold_601743.1 1550 0.0
Ahg941200 jgi|Araly1|941200|scaffold_601744.1 1511 0.0
Ahg941198 jgi|Araly1|941198|scaffold_601742.1 1467 0.0
Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248 817 0.0
Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605 808 0.0
Ahg472786 jgi|Araly1|472786|fgenesh2_kg.1__2740__AT1G26320.1 730 0.0
> Ahg941199 jgi|Araly1|941199|scaffold_601743.1
Length=1083
Score = 1550 bits (839), Expect = 0.0
Identities = 985/1057 (93%), Gaps = 4/1057 (0%)
Strand=Plus/Plus
Query 178 ACGATGACGACGAACAAGCAGGTCATATTCAAAGACCACGTGAGTGGTTTCCCTAAGGAA 237
|||| | |||||||||||||||| | ||| |||||| |||||||||||||||||||||||
Sbjct 29 ACGACGGCGACGAACAAGCAGGTGACATTGAAAGACTACGTGAGTGGTTTCCCTAAGGAA 88
Query 238 TCCGATTTCAATTTCACCACCACCACCGTCGAACTTAGGGTTCCGGAAGGTTCTAAATCG 297
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 89 TCCGATTTCGATTTCACCACCACCACCGTCGAACTTAAGGTTCCGGAAGGTTCTAACTCG 148
Query 298 GTTCTTGTGAAGAATCTCTACCTGTCATGCGATCCTTATATGCGGTCTCGCATGGGGAAA 357
||||| ||||| |||||||||||||||||||||||||| |||||| |||||||| | |||
Sbjct 149 GTTCTGGTGAAAAATCTCTACCTGTCATGCGATCCTTACATGCGGACTCGCATGAGCAAA 208
Query 358 CCTGATCCCTCCTCTGCTCTTGCTCAAGCTTACGCTCCCGGCAAGCCAATCTATGGGTAT 417
||| | || ||| |||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 209 CCTAAACCATCCACTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAATCTCTGGGTAT 268
Query 418 GGAGTGTCTAGAGTGATAGAATCTGGGCATCCAGATTA-CAAGAAAGGTGATTTACTCTG 476
||||||||||||||||||||||| || ||||||||||| ||| ||||| |||||||||||
Sbjct 269 GGAGTGTCTAGAGTGATAGAATCCGGACATCCAGATTACCAA-AAAGGCGATTTACTCTG 327
Query 477 GGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACACCAATGGCTCACA-TGCATTTCA 535
||| |||||||||||||||||||| |||||||| || |||| |||| | | |||||||
Sbjct 328 GGGGATAGTTGGATGGGAGGAGTACAGTGTTATCACTCCAACACCTCA-AGTTCATTTCA 386
Query 536 AGATCCAACATACAGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATGCCTGGTA 595
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGATCCAGCATACCGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATGCCTGGTA 446
Query 596 TGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGACAGTTTATG 655
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 447 TGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCCCCAAAGAAAGGAGAGACGGTTTATG 506
Query 656 TGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAATTTGCTAAGATGATGGGCT 715
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 507 TGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAACTTGCTAAGATGATGGGCT 566
Query 716 GTTATGTTGTTGGAAGCGCTGGAAGTAAAGAAAAGGTTGATCTCCTGAAGACCAAGTTTG 775
||||||||||||||||||| || || |||||||||||||||||||| |||||||||||||
Sbjct 567 GTTATGTTGTTGGAAGCGCCGGTAGCAAAGAAAAGGTTGATCTCCTCAAGACCAAGTTTG 626
Query 776 GGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTAGTGCTGCCCTCAAAAGGT 835
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 627 GGTTTGATGATGCATTTAACTACAAGGAAGAACCAGACCTTAGTGCTGCCCTCAAAAGGT 686
Query 836 GTTTTCCCAAGGGCATCGACATGTACTTTGAGAACGTAGGAGGCAAAATGCTAGATGCAG 895
|||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 687 GTTTCCCCAAAGGCATAGACATATACTTTGAGAACGTAGGAGGCAAAATGCTAGATGCAG 746
Query 896 TGCTCTTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTCACAGTACA 955
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 747 TGCTCTTAAACATGAACCCACACGGACGTATCGCTGTGTGTGGAATGATCTCACAGTACA 806
Query 956 ATCTTGAAAATCAAGAAGGTGTACACAACCTATCCAATATCATCTACAAACGAATACGCA 1015
|||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 807 ATCTTGAAAACCAAGAAGGTGTACACAACCTATCCAACATAATCTACAAACGAATCCGCA 866
Query 1016 TTCAAGGCTTTGTAGTGGCTGATTTCTACGACAAATACCCAAAGTTCTTGGAGTTGGTGC 1075
|||||||||||| ||| ||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 867 TTCAAGGCTTTGCGGTGTTTGATTACTACGACAAATACTCAAAGTTCTTGGAGTTTGTGC 926
Query 1076 TTCCGCGCATTAAAGAAGGGAAGATAACGTATGTGGAAGATGTAGCTGATGGGCTCGAGA 1135
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 927 TTCCGTGCATTAAAGAAGGGAAGATAACGTATGTGGAAGATGTAGCTGATGGGCTTGAGA 986
Query 1136 AAGCTCCTGAAGCTCTTGTGGGGCTTTTCCATGGTAAGAACGTTGGGAAACAAGTTGTTG 1195
||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 987 AAGGTCCTGAAGCTCTTGTGGGACTCTTCCATGGTAAGAACGTTGGGAAACAAGTTGTCG 1046
Query 1196 TTATTGCTCGTGAGTGAAGAATACTTATTTGGGAGTA 1232
|| ||||||||||||||||||||||||||||||||||
Sbjct 1047 TTGTTGCTCGTGAGTGAAGAATACTTATTTGGGAGTA 1083
> Ahg941200 jgi|Araly1|941200|scaffold_601744.1
Length=1078
Score = 1511 bits (818), Expect = 0.0
Identities = 973/1048 (93%), Gaps = 10/1048 (1%)
Strand=Plus/Plus
Query 174 AACAACGATGA---CGACGAACAAGCAGGTCATATTCAAAGACCACGTGAGTGGTTTCCC 230
||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 14 AACAACGATGACGGCGACAAACAAGCAGGTCATATTGAAAGACTACGTGAGTGGTTTCCC 73
Query 231 TAAGGAATCCGATTTCAATTTCACCACCACCACCGTCGAACTTAGGGTTCCGGAAGGTTC 290
|||||||||| ||||| |||||| |||| |||||||||| ||| |||||||| ||| ||
Sbjct 74 TAAGGAATCCAATTTCGATTTCAAGACCAACACCGTCGAATTTAAGGTTCCGGGAGGGTC 133
Query 291 TAAATCGGTTCTTGTGAAGAATCTCTACCTGTCATGCGATCCTTATATGCGGT-CTCGCA 349
||| || ||||| |||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 134 TAATTCAGTTCTGGTGAAGAATCTCTACCTGTCATGCGATCCTTACATGC-GTATTCGCA 192
Query 350 TGGGGAAACCTGATCCCT-C-CT-CTGCTCTTGCTCAAGCTTACGCTCCCGGCAAGCCAA 406
|||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||
Sbjct 193 TGGGGAAACCTGATCCCTCCACTGCTGCTCTTGCTCAAGCTTACGCTCCCGGCCAGCCAA 252
Query 407 TCTATGGGTATGGAGTGTCTAGAGTGATAGAATCTGGGCATCCAGATTACAAGAAAGGTG 466
||| ||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 253 TCTTTGGGTATGGAGTGTCTAGAGTTATTGAATCTGGACATCCTGATTACAAGAAAGGTG 312
Query 467 ATTTACTCTGGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACACCAATGGCTCACA 526
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 313 ATTTACTCTGGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACTCCAATGACTCACA 372
Query 527 TGCATTTCAAGATCCAACATACAGATGTTCCATTATCCTACTATACTGGACTTCTCGGTA 586
|||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 373 TGCATTTCAAGATCCAACATACCGATGTTCCATTATCTTACTACGCTGGACTTCTCGGTA 432
Query 587 TGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGA 646
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 433 TGCCCGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCCCCAAAGAAAGGAGAGA 492
Query 647 CAGTTTATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAATTTGCTAAGA 706
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 493 CGGTTTATGTGTCAGCTGCATCTGGTGCAGTTGGTCAGCTTGTGGGACAATTTGCTAAGA 552
Query 707 TGATGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAAAAGGTTGATCTCCTGAAGA 766
||||||||||||||||||||||||| || || | |||||||| ||||||||||| ||||
Sbjct 553 TGATGGGCTGTTATGTTGTTGGAAGTGCCGGTACCAAAGAAAAAGTTGATCTCCTCAAGA 612
Query 767 CCAAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTAGTGCTGCCC 826
|||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 613 CCAAGTTTGGATTTGATGATGCATTTAACTACAAGGAAGAACCAGACCTTACTGCTGCCC 672
Query 827 TCAAAAGGTGTTTTCCCAAGGGCATCGACATGTACTTTGAGAACGTAGGAGGCAAAATGC 886
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 673 TCAAAAGGTGTTTTCCCAAAGGCATCGACATATACTTTGAGAACGTAGGAGGCAAAATGC 732
Query 887 TAGATGCAGTGCTCTTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCT 946
|||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 733 TAGACGCAGTGCTCTTAAACATGAACCCACTCGGGCGTATAGCTGTCTGTGGAATGATCT 792
Query 947 CACAGTACAATCTTGAAAATCAAGAAGGTGTACACAACCTATCCAATATCATCTACAAAC 1006
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 793 CACAGTACAATCTTGAAAACCAAGAAGGTGTACACAACCTATCCAACATAATCTACAAAC 852
Query 1007 GAATACGCATTCAAGGCTTTGTAGTGGCT-GATTTCTACGACAAATACCCAAAGTTCTTG 1065
|||| ||||||||||| |||||||| || |||||||||||||||||| |||||||||||
Sbjct 853 GAATCCGCATTCAAGGGTTTGTAGTC-CTTGATTTCTACGACAAATACTCAAAGTTCTTG 911
Query 1066 GAGTTGGTGCTTCCGCGCATTAAAGAAGGGAAGATAACGTATGTGGAAGATGTAGCTGAT 1125
||||| ||||||||| |||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 912 GAGTTTGTGCTTCCGTGCATCAAAGAAGGGAAGATCACGTACGTGGAAGATGTGGCTGAT 971
Query 1126 GGGCTCGAGAAAGCTCCTGAAGCTCTTGTGGGGCTTTTCCATGGTAAGAACGTTGGGAAA 1185
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 972 GGGCTTGAGAAAGCTCCTGAAGCTCTTGTGGGACTCTTCCATGGTAAGAACGTTGGGAAA 1031
Query 1186 CAAGTTGTTGTTATTGCTCGTGAGTGAA 1213
||||||||||||||||||||||||||||
Sbjct 1032 CAAGTTGTTGTTATTGCTCGTGAGTGAA 1059
> Ahg941198 jgi|Araly1|941198|scaffold_601742.1
Length=1083
Score = 1467 bits (794), Expect = 0.0
Identities = 964/1046 (92%), Gaps = 12/1046 (1%)
Strand=Plus/Plus
Query 177 AACGATGA---CGACGAACAAGCAGGTCATATTCAAAGACCACGTGAGTGGTTTCCCTAA 233
|||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 22 AACGATGACGGCGACGAACAAGCAGGTCATATTGAAAGACTACGTGAATGGTTTCCCTAA 81
Query 234 GGAATCCGATTTCAATTTCACCACCACCACCGTCGAACTTAGGGTTCCGGAAGGTTCTAA 293
||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 82 GGAATCCGATTTCGATTTCACAACCACCACCGTCGAACTTAAGGTTCCGGAAGGTTCTAA 141
Query 294 ATCGGTTCTTGTGAAGAATCTCTACCTGTCATGCGATCCTTATATGCGG-TCTCGCATGG 352
|||||||| ||||||||||||||| |||||||||||||||| ||| || | ||||||||
Sbjct 142 CTCGGTTCTGGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGGAT-TCGCATGG 200
Query 353 GGAAACCTGATCCCT-C-CT-CTGCTCTTGCTCAAGCTTACGCTCCCGGCAAGCCAATCT 409
||||||||||||| | | || |||||||||||||||||||| |||||||| ||||||||
Sbjct 201 GGAAACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAATCC 260
Query 410 ATGGGTATGGAGTGTCTAGAGTGATAGAATCTGGGCATCCAGATTACAAGAAAGGTGATT 469
| ||||||| |||||| ||||||||||||||||| |||||||||||||| ||||| || |
Sbjct 261 AAGGGTATGTAGTGTCCAGAGTGATAGAATCTGGACATCCAGATTACAAAAAAGGAGACT 320
Query 470 TACTCTGGGGAATAGTTGGATGGGAGGAGTA-TAGTGTTATTACACCAATGGCTCACATG 528
|||||||||| ||||||| |||||||||||| | |||||| || |||| ||||| ||
Sbjct 321 TACTCTGGGGTATAGTTGCATGGGAGGAGTACT-CTGTTATCACTCCAACACCTCACGTG 379
Query 529 CATTTCAAGATCCAACATACAGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATG 588
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 380 CATTTCAAGATCCAGCATACCGATGTTCCATTATCTTACTACACTGGACTTCTCGGTATG 439
Query 589 CCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGACA 648
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CCCGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGACA 499
Query 649 GTTTATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAATTTGCTAAGATG 708
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 500 GTTTATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGGCAATTTGCTAAGATG 559
Query 709 ATGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAAAAGGTTGATCTCCTGAAGACC 768
||||||| ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 560 TTGGGCTGCTATGTTGTTGGAAGCGCCGGTAGCAAAGAAAAGGTTGATCTCCTCAAGACC 619
Query 769 AAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTAGTGCTGCCCTC 828
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 620 AAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAACCTGACCTTACTGCTGCCCTC 679
Query 829 AAAAGGTGTTTTCCC-AAGGGCATCGACATGTACTTTGAGAACGTAGGAGGCAAAATGCT 887
||||||||||| ||| || ||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 680 AAAAGGTGTTT-CCCTAATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAAATGCT 738
Query 888 AGATGCAGTGCTCTTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTC 947
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGACGCAGTGCTCGTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTC 798
Query 948 ACAGTACAATCTTGAAAATCAAGAAGGTGTACACAACCTATCCAATATCATCTACAAACG 1007
||||||||||||||| || || ||||||||||||||||||||||| || |||||||||||
Sbjct 799 ACAGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCTACAAACG 858
Query 1008 AATACGCATTCAAGGCTTTGTAGTGGCTGATTTCTACGACAAATACCCAAAGTTCTTGGA 1067
||| |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 859 AATCCGCATTCAAGGCTTTGTAGTTTCTGATTTCTATGACAAATACTCAAAGTTCTTGGA 918
Query 1068 GTTGGTGCTTCCGCGCATTAAAGAAGGGAAGATAACGTATGTGGAAGATGTAGCTGATGG 1127
||| |||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 919 GTTTGTGCTTCCGCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAGCTGATGG 978
Query 1128 GCTCGAGAAAGCTCCTGAAGCTCTTGTGGGGCTTTTCCATGGTAAGAACGTTGGGAAACA 1187
|||||||||||||||||||||||| || || || |||||||||||||| |||||||||||
Sbjct 979 GCTCGAGAAAGCTCCTGAAGCTCTCGTTGGACTCTTCCATGGTAAGAATGTTGGGAAACA 1038
Query 1188 AGTTGTTGTTATTGCTCGTGAGTGAA 1213
||||||||||||||||||||||||||
Sbjct 1039 AGTTGTTGTTATTGCTCGTGAGTGAA 1064
> Ahg903120 jgi|Araly1|903120|Al_scaffold_0003_248
Length=1056
Score = 817 bits (442), Expect = 0.0
Identities = 834/1021 (82%), Gaps = 36/1021 (4%)
Strand=Plus/Plus
Query 186 GACGAACAAGCAGGTCATA-TTCAAAGACCACGTGAGTGGTTTCCCTAAGGAATCCGATT 244
||| ||||||||||| ||| | | ||| |||| | |||||||| |||||||| ||
Sbjct 30 GACCAACAAGCAGGTGATACTGC-GAGATTACGTCACCGGTTTCCCCAAGGAATCAGACC 88
Query 245 TCAAT-TTCACC-ACCACCACCGTCGAACTT-AGGGTTCCGGAAGGTTCTAA-ATCGGTT 300
|| || |||||| | ||||| ||| | || | | ||||||| || || || | |||||
Sbjct 89 TC-ATCTTCACCGA-TTCCACCATCG-ATTTAAAGATTCCGGAGGGATCGAAGA-CGGTT 144
Query 301 CTTGTGAAGAATCTCTACCTGTCATGCGATCCTTATATGCG-GTCTCGCATGGGGAA-AC 358
|| ||||||||||||||| |||| ||||||||||| ||||| | |||||| ||||| |
Sbjct 145 CTGGTGAAGAATCTCTACTTGTCTTGCGATCCTTACATGCGCAT-TCGCAT-GGGAATTC 202
Query 359 CTGATCCC--TCCT-CTGCTCTTGCTCAAGCTTACGCTCCCGGCAAGCCAATCTATGGGT 415
| |||||| | || |||| || |||| | ||||| ||||||| ||||||| |||||||
Sbjct 203 CCGATCCCGGTACTGCTGCGCTCGCTCCACCTTACATTCCCGGCGAGCCAATTTATGGGT 262
Query 416 ATGGAGTGTCTAGAGTGATAGAATCTGGGCATCCAGATTACAAGAAA-GGTGATTTACTC 474
| |||||| | ||||||||| |||||||||||||||||||| ||| || || |||||
Sbjct 263 TTTCAGTGTCAAAAGTGATAGATTCTGGGCATCCAGATTACAA-AAAGGGAGACTTACTT 321
Query 475 TGGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACACCA-ATGGCTCACATGCATTT 533
|||||| |||||||||||| |||||| ||| |||| || ||| || | || ||||
Sbjct 322 TGGGGATTAGTTGGATGGGGGGAGTACAGTCTTATAACTCCAGAT--TTTTCA--CATTA 377
Query 534 CAAGATCCAACATACAGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATGCCTGG 593
|||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 378 CAAGATCCAACACACCGATGTTCCGTTATCCTACTACACTGGACTTCTCGGTATGCCTGG 437
Query 594 TATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGACAGT-TT 652
|||||||||||||||||||||||||||| | |||||||| ||||||||||| || || ||
Sbjct 438 TATGACTGCCTATGCTGGGTTTTATGAAATCTGTTCTCCTAAGAAAGGAGAAACTGTCTT 497
Query 653 ATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAATTTGCTAAGATGATGG 712
|||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct 498 C-GTGTCAGCTGCATCGGGTGCAGTTGGTCAGCTCGTGGGACAATTTGCAAAGATTATGG 556
Query 713 GCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAAAAGGTTGATCTCCTGAAGACCAAGT 772
|||| ||||| |||||||| || || ||||| |||||||||||||| || |||| |||||
Sbjct 557 GCTGCTATGTCGTTGGAAGTGCAGGCAGTAATGAAAAGGTTGATCTTCTCAAGAACAAGT 616
Query 773 TTGGGTTTGATGATGCATTTAACTACAAGGAAGA-ATCTGACCTTAGTGCTGCCCTCAAA 831
| ||||||||||| ||||| || ||||| ||||| | ||||||| || |||||| ||
Sbjct 617 TCGGGTTTGATGACGCATTCAATTACAAAGAAGAGAAA-GACCTTAATGTTGCCCTGAAG 675
Query 832 AGGTGTTTTCCC--AAGGGCATCGACATGTACTTTGAGAACGTAGGAGGCAAAATGCTAG 889
|||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 676 AGGTGTTT-CCCGGAAGGA-ATCGACATATACTTTGAGAACGTAGGAGGCAAAATGCTAG 733
Query 890 ATGCAGTGCTCTTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTCAC 949
| ||||||||| |||||||||| | |||||| |||||||| || ||||| ||||||||||
Sbjct 734 ACGCAGTGCTCCTAAACATGAAGCTACACGGCCGTATCGCAGTATGTGGTATGATCTCAC 793
Query 950 AGTACAATCTTGAAAATCAAGAAGGTGTACACAACCTATCCAATATCATCTACAAACGAA 1009
||||||| ||||| | || |||||||||||||||||| | || | |||||||| || |
Sbjct 794 AGTACAACCTTGAGGACCAGGAAGGTGTACACAACCTAGCAAACGTGATCTACAAGCGGA 853
Query 1010 TACGCATTCAAGGCTTTGTAGTGGCTGATTTCTACGACAAATACCCAAAGTTCTTGGAGT 1069
| || |||||||| || || ||| |||||| || |||||| || ||||||| |||| |
Sbjct 854 TTCGGATTCAAGGGTTCGTGGTGTCTGATTACTTTGACAAACACTTAAAGTTCCTGGATT 913
Query 1070 TGGTGCTTCCGCGCATTAA-AGAAGGGAAGATAACGTATGTGGAAGATGTAGCTGATGGG 1128
| ||||||||| || || |||||| |||||||| ||||| || ||| ||| ||| ||
Sbjct 914 TTGTGCTTCCGTATAT-AAGAGAAGGAAAGATAACTTATGTTGAGGATATAGTTGAAGGA 972
Query 1129 CTCGAGAAAGCTCCTGAAGCTCTTG-TGGGGCTTTTCCATGGTAAGAACGTTGGGAAACA 1187
|| ||||| | ||| |||| ||| | || || ||||||||||||||||| || |||||
Sbjct 973 CTTGAGAACGGACCTTCAGCT-TTGCTTGGACTGTTCCATGGTAAGAACGTCGGCAAACA 1031
Query 1188 A 1188
|
Sbjct 1032 A 1032
> Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605
Length=1041
Score = 808 bits (437), Expect = 0.0
Identities = 804/973 (83%), Gaps = 57/973 (6%)
Strand=Plus/Plus
Query 251 TCACCACCACCACCGTCGAACTTAGGGTTCCGGAA-GGTTCTA-AATCGGTTC-TT-GTG 306
||||| ||||||||||||| |||||||| || ||| || |||| | ||| | || |||
Sbjct 77 TCACCTCCACCACCGTCGATCTTAGGGTGCC-GAAGGGATCTATGA-CGG--CGTTGGTG 132
Query 307 AAGAATCTCTACCTGTCATGCGATCCTTATATGCGGTCTCGCATGGGGAAACCTGATCC- 365
|||||||||||| |||| ||||||||||| |||||| ||| ||| | |||||||||||
Sbjct 133 AAGAATCTCTACTTGTCTTGCGATCCTTACATGCGGAATCGTATGAGAAAACCTGATCCT 192
Query 366 CT---CCTCTGCT-CTTGCTCAAG--CTTACGCTCCCGGCAAGCCAATCT-ATGGGTATG 418
| || ||||| | ||||| || ||| | ||||||||||||| |||| | |||| ||
Sbjct 193 TTGAGCC-CTGCTAC-TGCTC-AGTCCTT-CACTCCCGGCAAGCCTATCTCA-GGGTTTG 247
Query 419 GAGTGTCTAGAGTGATAGAATCTGGGCATC-CAGATTAC-AAGAAAGGTGATTTACTCTG 476
||||||||| ||||||||| ||||| || | |||||||| ||| ||||||| ||||| ||
Sbjct 248 GAGTGTCTAAAGTGATAGATTCTGGACA-CTCAGATTACGAAG-AAGGTGACTTACTTTG 305
Query 477 GGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACACCAATGGCTCA-CATGCATTTCA 535
|||| ||| |||||||| ||||| ||||||||||||||||| || | | | || ||||
Sbjct 306 GGGAGCAGTAGGATGGGAAGAGTACAGTGTTATTACACCAATTCCTAATC-TTCACTTCA 364
Query 536 AGATCCAACATACAGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATGCCTGGTA 595
| ||||| ||||| ||| |||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 365 AAATCCATCATACCGATTTTCCCTTATCTTACTACACTGGACTTCTTGGTATGCCTGGTA 424
Query 596 TGACTGCCTATGCTGGGTTTTATGAAG-TTTGTTCTCCAAAGAAAGGAGAGACAGT-TTA 653
|||| || |||| ||||||||| | || | |||||||||||||||||||| || || ||
Sbjct 425 TGACCGCATATGTTGGGTTTTACG-AGATCTGTTCTCCAAAGAAAGGAGATACCGTGTT- 482
Query 654 TGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAATTTGCTAAGATGATGGG 713
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 483 TGTGTCAGCTGCCTCTGGCGCGGTTGGTCAGCTTGTAGGACAATTTGCTAAGATGATGGG 542
Query 714 CTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAAAAGGTTGATCTCCTGAAGACCAAGTT 773
||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 543 TTGTTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATCTCCTCAAGAACAAGTT 602
Query 774 TGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGAC-CTTAGTGCTGCCCTCAAAA 832
||| || ||||||||||| |||||||| |||||| | | |||| ||||||||| ||||
Sbjct 603 TGGATTCGATGATGCATTCAACTACAAAGAAGAA-CACAATCTTATTGCTGCCCTAAAAA 661
Query 833 GGTGTTTTCCC--AAGGGCATCGACATGTACTTTGAGAACGTAGGAGGCAAAATGCTAGA 890
||||||| ||| |||| ||| ||||| |||||||||||||| |||||||| ||||| ||
Sbjct 662 GGTGTTT-CCCTGAAGG-CATTGACATATACTTTGAGAACGTGGGAGGCAAGATGCTGGA 719
Query 891 TGCAGTGCTCTTAAACATGA-ACCCACACGGGCGTATCGCTGTC-TGTGGAATGATCTCA 948
||||||| |||||||||||| ||| |||||| |||||||| | | ||||| |||||||||
Sbjct 720 TGCAGTGATCTTAAACATGAGACC-ACACGGCCGTATCGCGG-CATGTGGGATGATCTCA 777
Query 949 CAGTACAATCTTGAA-AATCAAGAAGGTGTACACAACCTATC-CA-ATATCATCTACAAA 1005
||||||||||| ||| |||| ||||| || || || || | || | | |||||||
Sbjct 778 CAGTACAATCT-GAAGAATCCGGAAGGCATATACGGGCTCTCGCTCAT-T-ACCTACAAA 834
Query 1006 CGAATACGCATTC-AAGGCTTTGTAGTGGCT-GATTTCTACGACAAATACCCA-AAGTTC 1062
||||| || || | |||| ||| | || | |||| || |||||||||| || || |||
Sbjct 835 CGAATCCGTAT-CGAAGGGTTTA-ACTGTTTCGATTACTTCGACAAATACTCAGAA-TTC 891
Query 1063 TTGGAGTTGGTGCTTCCGCGCATTAA-AGAAGGGAAGATAACGTATGTGGAAGATGTAGC 1121
|||||||| ||| ||||| || || |||||| ||||||||||||||||||||||| ||
Sbjct 892 TTGGAGTTTGTGGTTCCGTATAT-AAGAGAAGGTAAGATAACGTATGTGGAAGATGTTGC 950
Query 1122 TGATGGGCTCGAGAAAGCTCCTGAAGCTCTTGTGGGGCT-TTTCCATGGTAAGAACGTTG 1180
||||||| |||||| ||||||| ||||| || || || |||| | ||||| ||||| |
Sbjct 951 TGATGGGATCGAGAGTGCTCCTGCTGCTCTCGTTGGACTCTTTC-ACGGTAAAAACGTCG 1009
Query 1181 GGAAACAAGTTGT 1193
|||||||| ||||
Sbjct 1010 GGAAACAACTTGT 1022
> Ahg472786 jgi|Araly1|472786|fgenesh2_kg.1__2740__AT1G26320.1
Length=1177
Score = 730 bits (395), Expect = 0.0
Identities = 843/1054 (80%), Gaps = 51/1054 (5%)
Strand=Plus/Plus
Query 186 GACGAACAAGCAGGTCATATTCAAAGACCACGTGAGTGGTTTCCCTAAG-GAATCCGAT- 243
||| ||||||||| |||||||| |||| | |||||||| ||||| ||| ||||| |||
Sbjct 30 GACCAACAAGCAGATCATATTCCGAGACTATGTGAGTGGATTCCC-AAGAGAATCTGATC 88
Query 244 TTCAATTTCACCACCACCACCGTCGAACTTAGGGTTCCGGAAGGTTCTAAATCGGTTCTT 303
|| || | ||||| || ||| |||| || ||| ||||||| || || | || || ||
Sbjct 89 TT-AACCTAACCACAACTACCATCGATCTAAGGCTTCCGGAGGGATCCACGTCAGTGCTG 147
Query 304 GTGAAGAATCTCTACCTGTCATGCGATCCTTATATGCG-GTCTCGCATGGGGAAA-CCTG 361
||||||||||| ||| |||| ||||||||||| ||||| | | |||| |||||| || |
Sbjct 148 GTGAAGAATCTTTACTTGTCTTGCGATCCTTACATGCGCAT-TTGCAT-GGGAAAGCCCG 205
Query 362 ATCCC---TCCTCTGCTCTTGCTCAAGCTTACGCTCCCGGCAAGCCAATCTA-TGGG-TA 416
||||| || ||| | |||| || | | ||| | ||| ||||||| | |||| |
Sbjct 206 ATCCCTTGTCTTCTTCCCTTGTTCCACCGTACAAGACTGGCGTGCCAATC-ATTGGGCT- 263
Query 417 TGGAGTGTCTAGAGTGATAGAATCTGGGCATCCAGATTACAAGAAA-GGTGATTTACTCT 475
||||||||||| ||||||||| || ||||||||||||||||| ||| || || ||||| |
Sbjct 264 TGGAGTGTCTAAAGTGATAGATTCAGGGCATCCAGATTACAA-AAAGGGAGACTTACTTT 322
Query 476 GGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACACCAA-TGGCT-CACATGCATTT 533
||||| ||||||||||||||||||||||||||||||| || | | | || |||||
Sbjct 323 GGGGACTAGTTGGATGGGAGGAGTATAGTGTTATTACTTTAACTCATTACTCA--CATTT 380
Query 534 CAAGATCCAACATACAGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATGCCTGG 593
||| |||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct 381 CAAAATCCAACACACCGATGTCCCGTTATCTTACTACACTGGACTTCTTGGTATGCCTGG 440
Query 594 TATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCC-AAAGAAAGGAGAGACAGT-T 651
||||||||| |||||||| ||||| ||| ||||||| || ||| ||||||||||| || |
Sbjct 441 TATGACTGCTTATGCTGGATTTTACGAAATTTGTTCACCTAAA-AAAGGAGAGACTGTCT 499
Query 652 TATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAATTTGCTAAGATGATG 711
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||
Sbjct 500 TC-GTGTCAGCTGCATCTGGCGCGGTTGGTCAGCTCGTGGGACAATTTGCAAAGTTGATG 558
Query 712 GGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAAAAGGTTGATCTCCTGAAGACCAAG 771
|| |||||||| ||||| || || || |||||||||||||||||||| || ||||| |||
Sbjct 559 GGTTGTTATGTCGTTGGTAGTGCCGGCAGTAAAGAAAAGGTTGATCTTCTCAAGACTAAG 618
Query 772 TTTGGGTTTGATGATGCATTT-AACTACAAGGAAGA-ATCTGACCTTAGTGCTGCCCTCA 829
||||||| ||||||||| ||| || ||||||||||| | ||| ||||||||||||| |
Sbjct 619 TTTGGGTATGATGATGC-TTTCAATTACAAGGAAGAGAAG-GACTTTAGTGCTGCCCT-A 675
Query 830 AA-AGGTGTTTTCCC-AAGGGCATCGACATGTACTTTGAGAACGTAGGAGGCAAAATGCT 887
| |||| |||||| ||||| |||||||| || ||||||||||| |||||||||||| |
Sbjct 676 AGGAGGTATTTTCCGGAAGGG-ATCGACATATATTTTGAGAACGTTGGAGGCAAAATGTT 734
Query 888 AGATGCAGTGCTCTTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTC 947
|||||| || ||| ||||||||| || || ||| |||| || ||||||||||||||
Sbjct 735 AGATGCCGTACTCATAAACATGAGGTTGCATGGTCGTGTCGCAGTATGTGGAATGATCTC 794
Query 948 ACAGTACAATCTT-GAAAATCAAGAAGGTGTACACAACCTATCCAAT-ATCATCTACAA- 1004
|||||||||| || || ||| |||||| |||||||||||| || | ||| | |||||
Sbjct 795 ACAGTACAAT-TTAGAGGATCCAGAAGGCGTACACAACCTA-CCGACCATCCTTTACAAG 852
Query 1005 ACGAATACG-CATTCAAGGCTTTGTAGTG-GCTGATTTCTACGACAAATACCCAAAGTTC 1062
| || ||| | ||||||| |||| || | |||||||||||||||||| |||||||
Sbjct 853 AGGA-TACAAC-TTCAAGGGTTTGGGGTTTG-TGATTTCTACGACAAATATTCAAAGTTT 909
Query 1063 TTGGAGTTGGTGCTTCCGCGCATTAAAGAAGGGAAGATAACG-TATGTGGAAGATGTAGC 1121
||||| || |||||||| ||||| |||||||||||||| | || || || || ||||
Sbjct 910 TTGGATTTTGTGCTTCCTTACATTAGAGAAGGGAAGATAA-GATACGTTGAGGACATAGC 968
Query 1122 TGATGGGCTCGAGAAAGCTCCTGAAGCTCTTG-TGGGGCT-TTTCCATGGTAAGAACGTT 1179
|| || |||||| | ||| |||||| | | || || ||| | ||||| |||||
Sbjct 969 GGAAGGATTCGAGAGTGGGCCTTCAGCTCT-GCTAGGACTCTTTGAA-GGTAAAAACGTC 1026
Query 1180 GGGAAACAAGT-TGTTGTTATTGCTCGTGAGTGA 1212
||||||||| | | |||| ||||||||||||||
Sbjct 1027 GGGAAACAACTCT-TTGTGGTTGCTCGTGAGTGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5