BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17010.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941201 jgi|Araly1|941201|scaffold_601745.1 2525 0.0
Ahg477555 jgi|Araly1|477555|fgenesh2_kg.3__256__AT3G03090.1 1327 0.0
> Ahg941201 jgi|Araly1|941201|scaffold_601745.1
Length=1549
Score = 2525 bits (1367), Expect = 0.0
Identities = 1481/1536 (96%), Gaps = 7/1536 (0%)
Strand=Plus/Plus
Query 98 TCG-CTCA-AATCACAGCTATGGCGCTTGATCCTGAGCAGCAGCAACCAATCTCCTCTGT 155
||| |||| | ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2 TCGACTCACAGTCACAGCTATGGCGCTTGATCCT--G-AGCAGCAACCAATCTCCTCTGT 58
Query 156 TTCCAGAGAGTTTGGTAAGTCATCTGGTGAGATCAGCCCAGAAAGGGAGCCTCTTATTAA 215
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 59 TTCCAGAGAGGTTGGTAAGTCAGATGGTGAGATCAGCGCAGAAAGGGAGCCTCTTATTAA 118
Query 216 AGAGAATCATGTC-CCAGAAAACTACTCTGTCGTTGCCGCCATTCTCCCGTTTTTATTTC 274
|||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 119 AGAGAATCAT-ACTCCAGAAAACTACTCTGTGGTTGCAGCCATTCTCCCGTTTTTCTTTC 177
Query 275 CAGCTCTCGGAGGACTGCTTTATGGTTATGAAATTGGTGCAACTTCTTGTGCAACCATTT 334
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAGCTCTCGGAGGACTTCTTTATGGTTATGAAATTGGTGCAACTTCTTGTGCAACCATTT 237
Query 335 CACTTCAGTCGCCTTCATTAAGTGGAATTTCATGGTACAACTTGTCCTCAGTGGATGTTG 394
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 238 CACTTCAGTCGCCTTCATTAAGTGGAATATCATGGTACAACTTGTCCTCAGTGGATGTTG 297
Query 395 GTCTAGTTACCAGTGGCTCACTTTACGGTGCATTATTTGGCTCAATTGTGGCTTTTACTA 454
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 GTTTAGTTACCAGTGGCTCACTTTACGGTGCATTATTTGGCTCAATTGTGGCTTTCACTA 357
Query 455 TCGCTGACGTTATAGGAAGAAGAAAGGAGCTGATTTTGGCTGCATTATTGTATCTCGTTG 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCGCTGACGTTATAGGAAGAAGAAAGGAGCTGATTTTGGCTGCATTATTGTATCTCGTTG 417
Query 515 GAGCCCTTGTGACTGCACTAGCCCCAACCTATTCCGTTCTGATAATTGGACGGGTTATTT 574
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 418 GAGCCCTTGTGACTGCACTAGCACCAACCTATTCCGTTTTGATAATTGGACGGGTTACTT 477
Query 575 ATGGGGTCTCAGTTGGACTGGCAATGCATGCGGCTCCGATGTACATTGCAGAGACTGCTC 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGGGGTCTCAGTTGGACTGGCAATGCATGCGGCTCCGATGTACATTGCAGAGACTGCTC 537
Query 635 CAAGTCCGATACGTGGACAGCTGGTATCATTAAAGGAATTCTTCATAGTCCTTGGGATGG 694
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 538 CAAGTCCGATACGTGGACAGCTGGTATCACTAAAAGAATTCTTCATAGTCCTTGGGATGG 597
Query 695 TTGGAGGTTATGGAATCGGTAGTCTTACAGTCAATGTTCATTCTGGTTGGCGATACATGT 754
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 598 TTGGAGGTTATGGAATCGGTAGTCTTACAGTCAATATTCATTCTGGTTGGCGGTACATGT 657
Query 755 ATGCAACAAGTGTCCCTTTGGCAGTTATTATGGGAATTGGGATGTGGTGGCTCCCAGCAT 814
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 ATGCAACAAGTGTCCCTTTGGCAGTTATTATGGGAATTGGCATGTGGTGGCTCCCAGCAT 717
Query 815 CCCCTAGGTGGCTTTTGTTGCGCGTCATACAGGGGAAAGGGAATGTGGAGAACCAACGAG 874
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCCCTAGGTGGCTTTTGCTGCGCGTCATACAGGGGAAAGGGAATGTGGAGAACCAACGAG 777
Query 875 AGGCTGCAATCAAATCTCTCTGCTGCCTTAGAGGCCCTGCTTTTGTTGATTCAGCTGCTG 934
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 AGTCTGCAATCAAATCTCTCTGCCGCCTTAGAGGCCCTGCTTTTGTTGATTCAGCTGCTG 837
Query 935 AACAAGTAAATGAGATTTTGGCTGAACTAACTTTTGTGGGCGAGGATAAAGAAGTCACAT 994
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 838 AACAAGTAAATGAGATTTTGGCTGAACTTACTTTTGTGGGAGAGGATAAAGAAGTCACTT 897
Query 995 TTGGTGAATTATTTCAAGGGAAGTGCTTGAAAGCTCTCATCATAGGAGGAGGTCTAGTCT 1054
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTGGTGAATTATTTCATGGGAAGTGCTTGAAAGCTCTCATCATAGGAGGAGGTCTAGTCT 957
Query 1055 TGTTTCAGCAGATAACTGGACAACCAAGTGTGCTTTATTATGCACCATCAATACTGCAGA 1114
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGTTTCAACAGATAACTGGGCAACCAAGTGTGCTTTATTATGCACCATCAATACTGCAGA 1017
Query 1115 CCGCTGGCTTTTCAGCCGCAGGTGATGCAACAAGGGTCTCAATTCTACTTGGTCTATTGA 1174
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCGCTGGCTTTTCTGCCGCAGGTGATGCAACAAGGGTCTCAATTCTACTTGGTCTATTGA 1077
Query 1175 AGTTGATTATGACAGGAGTAGCTGTTGTAGTTATCGACAGACTTGGAAGGAGACCTTTAC 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGTTGATTATGACAGGAGTAGCTGTTGTAGTTATCGACAGACTTGGAAGGAGACCTTTAC 1137
Query 1235 TTCTTGGTGGAGTTGGTGGCATGGTTGTTTCATTATTCCTGCTGGGGTCATACTACCTCT 1294
||||||| || || ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1138 TTCTTGGCGGTGTCAGTGGCATGGTTGTCTCATTATTCCTGCTAGGGTCATACTACCTCT 1197
Query 1295 TTTTCAGCGCCTCACCAGTTGTTGCTGTAGTTGCACTGCTGCTTTATGTGGGCTGTTACC 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTTTCAGCGCCTCACCAGTTGTTGCTGTAGTTGCACTGCTGCTTTATGTGGGCTGTTACC 1257
Query 1355 AGCTATCTTTTGGTCCAATTGGTTGGCTGATGATTTCAGAGATATTTCCCCTTAAACTAA 1414
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 AGCTATCCTTTGGTCCAATTGGTTGGCTGATGATTTCAGAGATATTTCCCCTTAAATTAA 1317
Query 1415 GAGGTCGAGGTCTCAGTCTAGCAGTGCTTGTGAATTTTGGTGCAAACGCACTTGTGACAT 1474
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1318 GAGGTCGAGGTCTCAGTCTGGCAGTGCTTGTGAATTTCGGTGCCAACGCACTTGTGACAT 1377
Query 1475 TTGCGTTTTCACCCCTAAAGGAACTGCTGGGAGCTGGGATACTGTTTTGTGGGTTTGGTG 1534
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 TTGCTTTTTCACCCCTAAAGGAACTGTTGGGAGCTGGGATACTGTTTTGTGGGTTTGGTG 1437
Query 1535 TGATATGTGTATTGTCTCTGGTATTCATATTCTTCATTGTGCCAGAGACAAAGGGTCTCA 1594
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1438 TAATATGTGTGTTGTCTCTGGTCTTCATATTCTTCATTGTGCCAGAGACAAAGGGCCTCA 1497
Query 1595 CTCTTGAGGAAATTGAAGCCAAATGTCTCTAAAAAA 1630
||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTCTTGAGGAAATTGAAGCCAAATGTCTCTAAAAAA 1533
> Ahg477555 jgi|Araly1|477555|fgenesh2_kg.3__256__AT3G03090.1
Length=2031
Score = 1327 bits (718), Expect = 0.0
Identities = 1227/1469 (84%), Gaps = 49/1469 (3%)
Strand=Plus/Plus
Query 181 GGTGAGATC-A-GCCCAGAAAGGGAGCCTCTT-ATTAAAGAGAATCA-TGTCCCAGAAAA 236
||||||||| | || || ||| ||| ||| || || ||||||||||| | |||||||||
Sbjct 231 GGTGAGATCAATGCTCA-AAA-GGAACCT-TTGATAAAAGAGAATCACAG-CCCAGAAAA 286
Query 237 CTACTCTG-TCGTTGCCGCCATTCTCCCGTTT-TTATTTCCAGCTCTCGGAG-GACTGCT 293
|||||||| || |||| ||||||| ||||||| || ||||||||||| |||| | ||||
Sbjct 287 CTACTCTGTTC-TTGCAGCCATTCCCCCGTTTCTT-TTTCCAGCTCTTGGAGCG-TTGCT 343
Query 294 TTATGGTTATGAAATTGGTGCAACTTCTTGTGCAACCATTTC-ACTTCAGTCGCCTTCAT 352
|| |||||||||||||||||| || |||||||| | ||| || | || |||||||| | |
Sbjct 344 TTTTGGTTATGAAATTGGTGCGACATCTTGTGCTATCATGTCTA-TTAAGTCGCCTAC-T 401
Query 353 -TAAGTGGAATTTCATGGTACAACTTGTCCTCAGTGGATGTTGGTCTAGTTACCAGTGGC 411
||||||||||| |||||||| ||||||| ||||| ||||||||| || |||||||||||
Sbjct 402 CTAAGTGGAATTACATGGTACGACTTGTCTTCAGTCGATGTTGGTATACTTACCAGTGGC 461
Query 412 TCACTTTACGGTGCATTATTTGGCTCAATTGTGGCTTTTACTATCGCTGACGTTATAGGA 471
||||| || ||||| ||| ||||||| ||||| || |||| | | || ||| ||||||||
Sbjct 462 TCACTGTATGGTGCCTTAATTGGCTCCATTGTTGCATTTAGTGTTGCCGACATTATAGGA 521
Query 472 AGAAGAAAGGAGCTGATTTTGGCTGCATTATTGTATCTCGTTGGAGCCCTTGTGACTGCA 531
|| |||||||||||||||||||||||||| |||||||| || |||||| ||||||||| |
Sbjct 522 AGGAGAAAGGAGCTGATTTTGGCTGCATTCTTGTATCTTGTCGGAGCCATTGTGACTGTA 581
Query 532 CTAGCCCCAACCTATTCCGTTCTGATAATTGGACGGGTTATTTATGGGGTCTCAG-TTGG 590
|||| || || |||| | |||||||||||||| |||| |||||| | | ||||
Sbjct 582 GTAGCACCTGTCTTTTCCATACTGATAATTGGACGAGTTACTTATGGCAT-GGGGATTGG 640
Query 591 ACTGGCAATGCATGCGGCTCCGATGTACATTGCAGAGACTGCTCCAAGTCCGATACGTGG 650
|||| ||||||| |||||||| ||||||||||| ||||||||||| |||| ||||||||
Sbjct 641 ACTGACAATGCACGCGGCTCCAATGTACATTGCGGAGACTGCTCCTAGTCAAATACGTGG 700
Query 651 ACAGCTGGTATCA-TTAAAGGAATTCTT-CA-TAGTCCTTGGGATGGTTGGAGGTTATGG 707
|| | || ||||| | ||||||||| || || | || |||||||||||| |||||||
Sbjct 701 ACGGATGATATCACTGAAAGGAATT-TTCCACT-GTTCTTGGGATGGTT----GTTATGG 754
Query 708 AATCGGTAGTCTTACAGTCAATGTTCATTCTGGTTGGCGATACATGTATGCAACAAGTGT 767
||||||||| ||| || | ||| |||||| ||||| | ||||| ||||||| | |
Sbjct 755 AATCGGTAGCCTTTGGGTTACGGTTTTTTCTGGCTGGCGTTGTATGTACGCAACAATTCT 814
Query 768 CCCTTTGGCAGTTATTATGGGAATTGGGATGTGGTGGCTCCCAGCATCCCCTAGGTGGCT 827
||||||| ||||||||||||||||||| ||||| ||||| |||||||| || ||||||||
Sbjct 815 CCCTTTGCCAGTTATTATGGGAATTGGAATGTGTTGGCTACCAGCATCTCCGAGGTGGCT 874
Query 828 TTTGTTGCGCG-TCATACAGGGGAAAGGGAATGTGGAGAACCAACGAGAGGCTGCAATCA 886
||| ||||||| || | ||| | ||||||||||||||||| | | | |||||||||| |
Sbjct 875 TTTATTGCGCGCTC-TCCAGAGAAAAGGGAATGTGGAGAATCTTCAACAGGCTGCAATTA 933
Query 887 AATCTC-TCTGCT-GCCTTAGAGGCCCTGCTTTTGTTGATTCAGCTGCTGAACAAGTAAA 944
|||| || | | |||||||||| |||| | | ||| ||||| ||||||||||||||
Sbjct 934 GGTCTCTTC-G-TCGCCTTAGAGGGTCTGCCATAGCTGACTCAGCAGCTGAACAAGTAAA 991
Query 945 TGAGATTTTGGCTGAACTAACTTTTGTGGGCGAGGATAAAGAAGTC-ACATTTGGTGAAT 1003
||||| ||||||||||| | ||||| || ||||| ||||||| | |||||||||||||
Sbjct 992 CGAGATCTTGGCTGAACTTTCCTTTGTAGGTGAGGACAAAGAAG-CTACATTTGGTGAAT 1050
Query 1004 TATTTCAAGGGAAGTGCTTGAAAGCTCTCATCATAGGAGGA-GGTCTAGTCTTGTTTCAG 1062
|||||| ||| || ||||| |||||||||| || | |||| ||| |||||||||| ||
Sbjct 1051 TATTTCGAGGCAAATGCTTAAAAGCTCTCAAAATTGCAGGAGGGT-TAGTCTTGTTCCAA 1109
Query 1063 CAGATAACTGGACAACCAAGTGTGCTTTATTATGCACCATCAATACTGCAGACCGCTGGC 1122
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct 1110 CAGATAACTGGGCAACCAAGTGTACTTTATTATGCACCATCAATACTACAGACTGCCGGC 1169
Query 1123 TTTTCAGCCGCAGGTGATGCAACAAGGGTCTCAATTCTACTTGGTCTATTGAAGTTGATT 1182
||||| || |||| ||||||||| || |||||||||| || ||||||||||||||| ||
Sbjct 1170 TTTTCTGCTGCAGCTGATGCAACTCGGATCTCAATTCTGCTCGGTCTATTGAAGTTGGTT 1229
Query 1183 ATGACAGGAGTAGCTGTTGTAGTTATCGACAGACTTGGAAGGAGACCTTTACTTCTTGGT 1242
||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct 1230 ATGACAGGAGTTTCTGTTATAGTTATTGACAGAGTTGGAAGGAGACCTTTACTTCTTGGC 1289
Query 1243 GGAGTTGGTGGCATGGTTG-TTTCATTATTCCTGCTGGGGTCATACTACCTCTTTT-TCA 1300
|| ||| ||||||||| || | ||||| ||||| |||||||| |||||| |||||| | |
Sbjct 1290 GGTGTTAGTGGCATGG-TGATCTCATTGTTCCTCCTGGGGTCCTACTACATCTTTTATAA 1348
Query 1301 GCGCCTCACCAGTTGTTGCTGTAGTTGCACTGCTGCTTTATGTGGGCTGTTACCAGCTAT 1360
| | ||||| ||||||||||| |||| |||| || ||||| ||||||||||||||||
Sbjct 1349 AAGTGT-ACCAGCTGTTGCTGTAGCTGCATTGCTACTGTATGTAGGCTGTTACCAGCTAT 1407
Query 1361 CTTTTGGTCCAATTGGTTGGCTGATGATTTCAGAGATATTTCCCCTTAAACT-AAGAGGT 1419
| ||||| || ||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 1408 CCTTTGGCCCTATTGGTTGGCTGATGATTTCAGAGATATTTCCC-TTAAAATTAAGAGGT 1466
Query 1420 CGAGGTCTCAGTCTAGCAGTGCTTGTGAATTTTGGTGCAAACGCACTTGTGACATTTGCG 1479
||||| ||||||||||||| ||||||||||| || ||||||||||| |||||||| ||
Sbjct 1467 CGAGGAATCAGTCTAGCAGTTCTTGTGAATTTCGGAGCAAACGCACTAGTGACATTCGC- 1525
Query 1480 TTT-TCACCCCTAAAGGAACTGCTGGGAGCTGGGATACT-GTTTTGTGGGTTTGGTGTGA 1537
||| ||||| |||||||| ||| | |||||||| || || ||| |||| ||||| ||||
Sbjct 1526 TTTCTCACCTCTAAAGGAGCTGTTAGGAGCTGGAAT-CTTGTTCTGTGCATTTGGAGTGA 1584
Query 1538 TATGTGTATTGTCTCTGGTATTCATATTCTTCATTGTGCCAGAGACAAAGGGTCTCACTC 1597
|||||||| ||||||| | ||||||| || ||| |||||||||||||||||||||||||
Sbjct 1585 TATGTGTAGTGTCTCTCTTCTTCATATACTACATAGTGCCAGAGACAAAGGGTCTCACTC 1644
Query 1598 TTGAGGAAATTGAAGCCAAATGTCTCTAA 1626
|||| ||||||||||||||||||||||||
Sbjct 1645 TTGAAGAAATTGAAGCCAAATGTCTCTAA 1673
Score = 154 bits (83), Expect = 3e-36
Identities = 112/126 (89%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 1504 GGAGCTGGGATAC-TGTTTTGTGGGTTTGGTGTGATATGTGTATTGTCTCTGGTATTCAT 1562
|||||||| || | |||| |||| ||||| |||||||||||| ||||||| | |||||
Sbjct 1683 GGAGCTGGAAT-CTTGTTCTGTGCATTTGGAGTGATATGTGTAGTGTCTCTCTTCTTCAT 1741
Query 1563 ATTCTTCATTGTGCCAGAGACAAAGGGTCTCACTCTTGAGGAAATTGAAGCCAAATGTCT 1622
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1742 ATACTACATTGTGCCAGAGACAAAGGGTCTCACTCTTGAAGAAATTGAAGCCAAATGTCT 1801
Query 1623 CTAAAA 1628
||||||
Sbjct 1802 CTAAAA 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5