BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17040.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1 1910 0.0
Ahg488566 jgi|Araly1|488566|fgenesh2_kg.6__1700__AT5G17030.1 1432 0.0
Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359 1125 0.0
Ahg906050 jgi|Araly1|906050|Al_scaffold_0003_3178 207 1e-52
> Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1
Length=1406
Score = 1910 bits (1034), Expect = 0.0
Identities = 1291/1411 (91%), Gaps = 34/1411 (2%)
Strand=Plus/Plus
Query 1 CTCTTCCATGGCCAACTCCCACGTGGCAGTTCTCGCTTTTCCATTCGGCAGTCATGGTCA 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1 CTCTTCCATGGCCAACTCCCACGTCGCAGTTCTCGCTTTTCCATTCGGCAGTCACGGTCA 60
Query 61 GGCTATCCTCGCCGTCACCCGTCGTCTCGCCACCGCAGCTCCTTCCACCGTCTTCTCCTT 120
|||||||||||| ||||||| || |||||| ||||| ||||||||||||||||||||||
Sbjct 61 GGCTATCCTCGCTGTCACCCACCGCCTCGCCTCCGCATCTCCTTCCACCGTCTTCTCCTT 120
Query 121 CTTGAACACCTCACAATCCAACTTCTCGTTGCTCTCCTCCGATCTTCCTCCGAACATTCG 180
||| |||||||||||||||||||| || || |||||||||||| ||| ||||||||||
Sbjct 121 CTTCAACACCTCACAATCCAACTTTTCATTATTCTCCTCCGATCGTCCGGCGAACATTCG 180
Query 181 GGTCCATGACGTGTCCGACGGTGTTCCCGAGGGATACGTGCTCTCGAGGAATCCACAGGA 240
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 181 GGTCCATGACGTGTCTGACGGTGTTCCCGAGGGATACGTGCTCTCCAGAAATCCACAGGA 240
Query 241 GGCGGTCGAGCTGTTTCTTGAAGCGGCGCCGGAGATTTTTAGGAGAGAACTCGCGGTGGC 300
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 241 GGCGGTCGAGCTGTTTCTTGAAGCGGCGCCGAAGATTTTTCGGAGAGAACTCGCGGTGGC 300
Query 301 GGAGACTGAGGTTGGTAGGAAAGTGACATGCATGCTCACGGATGCGTTCATCTGGTTCGC 360
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GGAGACTGAGGTTAGTAGGAAAGTGACATGCATGCTTACGGATGCGTTCATCTGGTTCGC 360
Query 361 GGGGGATATGGCGGCGGAGATGAAAGTGTCGTGGGTTGCTTTCTGGACCTCCGG----AA 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TGCGGATATGGCGGCGGAGATGAAAGTGTCGTGGGTTGCTTTCTGGACCTCCGGACAAAA 420
Query 417 CTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACAATC---G-C-------T 465
|||||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 421 CTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACCATCGGTGTCAAAGAAGT 480
Query 466 -G-T---C--A--AAGGAAACATTAGGGTGTATTTCTGGAATGGAGAAGATCAGAGTTAA 516
| | | | ||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 481 AGATGGGCGTATGGAGGAAACATTAGGGTTTATTTCAGGAATGGAGAAGATCAGAGTCAA 540
Query 517 AGATACACCAGAAGGAGTTGTGTTTGGGAATTTAGACTCTGTTTTCTCGAA-GATGTTGC 575
||| | ||||| |||||||||||||||||||||||||||||||||||| || | | |||
Sbjct 541 AGACATACCAGGAGGAGTTGTGTTTGGGAATTTAGACTCTGTTTTCTC-AACTACGCTGC 599
Query 576 ACCAAATGGGACTTGCTTTGCCTCGTGCCACTACGGTTTACATGAATTCTTTTGAAGAAT 635
||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||
Sbjct 600 ACCAAATGGGACTTGCTTTGCCTCGGGCGACTGCGGTTTACATGAATTCCTTTGAAGAAT 659
Query 636 TAGACCCTACATTGACTGAT-AACCTCAGAT-TGAAATTCAAACGTTACCTGAGCATCGG 693
|||| ||||||||||||| | |||||||| | | |||||||||||||| ||||||| ||
Sbjct 660 TAGATCCTACATTGACTG-TAAACCTCAGGTCT-AAATTCAAACGTTATTTGAGCATTGG 717
Query 694 TCCTCTTGCGTTGTTATTCTCTACTTCGCAAAGAGAAACACCATTGCATGATCCACACGG 753
|||||| ||||||||||| ||| | ||||||||||||||||||||||||||||| ||||
Sbjct 718 TCCTCTAGCGTTGTTATTTTCTCCATCGCAAAGAGAAACACCATTGCATGATCCTCACGC 777
Query 754 CTGCTTGGCTTGGATCAAGAAGCGGTCCACTGCTTCTGTAGTTTACATTGCCTTCGGTAG 813
|||||| ||||||||| |||||||||||| || |||||||| |||||||||||||||||
Sbjct 778 CTGCTTAGCTTGGATCGAGAAGCGGTCCATTGATTCTGTAGCGTACATTGCCTTCGGTAG 837
Query 814 AGTCATGACACCGCCTCCTGGAGAGCTTGTAGTGGTAGCACAAGGATTGGAATCGAGTAA 873
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 838 AGTCATGACACCGCCTCCTGGAGAGCTTGTGGCAATAGCACAAGGATTGGAATCGAGTAA 897
Query 874 AGTGCCTTTTGTTTGGTCGCTCCAAGAGAAGAACATGGTTCATTTACCAAAAGGGTTTTT 933
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 898 AGTGCCTTTTGTTTGGTCGCTACAAGAGATGAACATGGTTCATTTACCAAAAGGGTTTTT 957
Query 934 GGATGGGACAAGAGAGCAAGGAATGGTGGTCCCATGGGCACCACAAGTGGAGCTGCTAAA 993
|||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 958 GGATCGGACAAGAGAGCAAGGGATGGTGGTCCCATGGGCACCTCAAGTGGAGCTGCTAAA 1017
Query 994 CCATGAAGCAATGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGTGTTGGAGAGTGT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCATGAAGCAATGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGTGTTGGAGAGTGT 1077
Query 1054 ATCGGCAGGTGTACCAATGATTTGTAGACCGATTTTCGGGGATCACGCACTCAATGCAAG 1113
|||||||||||||| |||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 1078 GTCGGCAGGTGTACCGATGATTTGCAGACCGATTTTCGGGGACCATGCAGTCAATGCAAG 1137
Query 1114 ATCCGTGGAGGCTGTGTGGGAAATTGGAATGACGATTAGTAGTGGA-GTCTTCACGAAGG 1172
||||||||||||||||||||| |||||||||||||||| || | | || ||||| ||||
Sbjct 1138 ATCCGTGGAGGCTGTGTGGGAGATTGGAATGACGATTATTAAAGAAAGT-TTCACCAAGG 1196
Query 1173 ATGGATTTGAGGAGAGTTTGGATCGGGTTTTGGTTCAAGATGATGGCAAGAAGATGAAGT 1232
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATGGATTTGAGGAGAGTTTAGATCGGGTTTTGGTTCAAGATGATGGCAAGAAGATGAAGG 1256
Query 1233 TTAATGCCAAGAAGCTTAAAGAACTAGCACAAGAAGCTGTCTCTACGGAAGGAAGCTCCT 1292
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1257 TTAATTCTAAGAAGCTTAAAGAACTAGCACAAGACGCTGTCTCTACGGAAGGAAGCTCCT 1316
Query 1293 TTGAGAATTTCAAAGGTTTGTTGGACGAAGTTATGAAAGTTTGAA-GCAAATAGACTTTG 1351
|| ||||||||||||||||||||||||||||| ||||||||| || |||||| |||||||
Sbjct 1317 TTAAGAATTTCAAAGGTTTGTTGGACGAAGTTGTGAAAGTTT-AATGCAAATTGACTTTG 1375
Query 1352 GATAAATAAACAAATAAACATGTTCTGTTTT 1382
|||||||||||||||||||||||||||||||
Sbjct 1376 GATAAATAAACAAATAAACATGTTCTGTTTT 1406
> Ahg488566 jgi|Araly1|488566|fgenesh2_kg.6__1700__AT5G17030.1
Length=1387
Score = 1432 bits (775), Expect = 0.0
Identities = 1170/1355 (86%), Gaps = 49/1355 (4%)
Strand=Plus/Plus
Query 15 ACTCCCACGTGGCAGTTCTCGCTTTTCCATTCGGCAGTCATGGTCAG--GCTATCCTCGC 72
|||||||| |||||||||||||||| || ||||||| |||| | ||| || |||| ||
Sbjct 44 ACTCCCACATGGCAGTTCTCGCTTTCCCCTTCGGCACTCAT-G-CAGCTCCTCTCCTAGC 101
Query 73 CGTCACCCGTCGTCTCGCCACCGCAGCTCCTTCCACCGTCTTCTCCTTCTTGAACACCTC 132
|||||| | |||||||||||||| ||||| ||||| |||||||||||||| | |||| |
Sbjct 102 CGTCACGTGCCGTCTCGCCACCGCTGCTCCCTCCACTGTCTTCTCCTTCTTCAGCACCGC 161
Query 133 ACAATCCAACTTC-TCGTTGCTCTCCTCCGATCTTCCTC-CGAACATTCGGGTCCATGAC 190
|| ||||||| || ||||| ||||||||||||||||| | |||||||||| ||||| ||
Sbjct 162 ACGATCCAAC-TCGTCGTTACTCTCCTCCGATCTTCC-CGCGAACATTCGAGTCCACAAC 219
Query 191 GT-GTCCGACGGTGTTCCCGAGGGATACGTGCTCTCGAGG-AATCCACAGGAGGCGGTCG 248
|| | | ||||||||||| ||||||| | || | || || ||||||||||| ||||| |
Sbjct 220 GTCG-CTGACGGTGTTCCTGAGGGATCCATGTTGACG-GGTAATCCACAGGAAGCGGTTG 277
Query 249 AGCTGTTTCTTGAAGCGGCGCCGGAGATTTTTAGGAGAGAACTCGCGGTGGCGGAGACTG 308
||||||||||||||||||| ||||||||||| |||| ||| || || ||||||||| |
Sbjct 278 AGCTGTTTCTTGAAGCGGCACCGGAGATTTTCCGGAGGGAAATCAAGGCGGCGGAGACAG 337
Query 309 AGGTTGGTAGGAAAGTGACA-TGCATGCTCACGGATGCGTTCATCTGGTTCGC-G-GGGG 365
| |||||||||||||| | | ||||| || |||||||||||| |||||||||| | || |
Sbjct 338 AAGTTGGTAGGAAAGTCA-AGTGCATCCTTACGGATGCGTTCCTCTGGTTCGCAGCGGAG 396
Query 366 A-TATGGCGGCGGAGATGAAAGTGTCGTGGGTTG-CT-TTCTGGACCTCCG-G--AACTC 419
| ||||||||||||||||| ||||||||||| || | |||| | | | |||||
Sbjct 397 ACGGCGGCGGCGGAGATGAAAGCGTCGTGGGTTGCCTACTATGGA-GGCGGAGCAAACTC 455
Query 420 GCTCACTGCTCATCTCTACACAGATCTCATCAGAG-AAACAATCGCTGTC-AA------- 470
||||||||||||||||||||||||| ||||||||| |||| ||| |||| ||
Sbjct 456 GCTCACTGCTCATCTCTACACAGATGTCATCAGAGAAAAC-GTCGGTGTCAAAGGTGGGC 514
Query 471 --A-GGA--A-ACATTAGGGTGTATTTCTGGAATGGAGAAGATCAGAGTTAAAGATACAC 524
| ||| | |||||||||| ||| || ||||||| |||||||||||| ||||| ||||
Sbjct 515 GTATGGAGGAGACATTAGGGTTTATCTCAGGAATGGGGAAGATCAGAGTCAAAGACACAC 574
Query 525 CAGAAGGAGTTGTGTTTGGGAATTTAGACTCTGTTTTCTCGAAGATGTTGCACCAAATGG 584
|||||||||||||||||||||| |||||||||||||| || || | ||||||||||||||
Sbjct 575 CAGAAGGAGTTGTGTTTGGGAACTTAGACTCTGTTTTTTCTAAAACGTTGCACCAAATGG 634
Query 585 GACTTGCTTTGCCTCGTGCCACTA-CGGTTTACATGAATTCTTTTGAAGAATTAGACCCT 643
| | |||||| |||||||||| | | |||| ||| ||||| ||||||||||| || |||
Sbjct 635 GTCGTGCTTTACCTCGTGCCA-AAGCTGTTTTCATCAATTCCTTTGAAGAATTGGATCCT 693
Query 644 ACATTGACTGATAACCTCAGATT-GAAATTCAAACGTTACCTGAGCATCGGTCCTCTTGC 702
||||| || || || |||| || |||||||| ||||||||| |||||||||||||| ||
Sbjct 694 ACATTTACAAATGACTTCAG-TTCGAAATTCACACGTTACCTAAGCATCGGTCCTCTCGC 752
Query 703 GTTGTTATTC-TCTACTTCGCAAAGAGAAACACCATTGCATGATCCACACGGCTGCTTGG 761
|| ||| || ||| | ||||||| | |||| | |||| ||||| ||||| |||||||
Sbjct 753 TTTATTA-TCTTCTCCATCGCAAACATCCACACTAATGCACGATCCTCACGGTTGCTTGG 811
Query 762 CTTGGATCAAGAAGCGGTCCACTGCTTCTGTAGTTTACATTGCCTTCGGTAGAGTCATGA 821
|||||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||| |
Sbjct 812 CTTGGATCGAGAAGCGATCCCCTGCATCTGTAGCGTACATTGCCTTCGGTAGAGTCGCGT 871
Query 822 CACCGCCTCCTGGAGAGCTTGTA-GTGGTAGCACAAGGATTGGAATCGAGTAAAGTGCCT 880
||||||||||||||||||||| | | | |||||||||||||||| |||||||||||||||
Sbjct 872 CACCGCCTCCTGGAGAGCTTG-AGGCGATAGCACAAGGATTGGAGTCGAGTAAAGTGCCT 930
Query 881 TTTGTTTGGTCGCTCCAAGAGAAGAACATGGTTCATTTACCAAAAGGGTTTTTGGATGGG 940
|| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 931 TTCGTTTGGTCGCTACAAGAGATGAACATGGTTCATTTACCAAAAGGGTTTCTGGAACGG 990
Query 941 ACAAGAGAGCAAGGAATGGTGGTCCCATGGGCACCACAAGTGGAGCTGCTAAACCATGAA 1000
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 991 ACAAGAGAGCAAGGGATGGTGGTCCCATGGGCACCTCAAGTGGAGCTGCTAAACCATGAA 1050
Query 1001 GCAATGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGTGTTGGAGAGTGTATCGGCA 1060
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1051 GCAACGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGTGTTGGAGAGTGTGTCGGCA 1110
Query 1061 GGTGTACCAATGATTTGTAGACCGATTTTCGGGGATCACGCACTCAATGCAAGATCCGTG 1120
|||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 1111 GGTGTACCGATGATTTGCAGACCGATTTTCGGGGATCATGCAGTCAATGCAAGATCTGTG 1170
Query 1121 GAGGCTGTGTGGGAAATTGGAATGACGATTAGTAG-TGGAGTCTTCACGAAGGATGGATT 1179
||||||||||||||||||||||||||||||| | | |||||| ||||| |||||||||||
Sbjct 1171 GAGGCTGTGTGGGAAATTGGAATGACGATTA-TTGATGGAGTTTTCACAAAGGATGGATT 1229
Query 1180 TGAGGAGAGTTTGGATCGGGTTTTGGTTCAAGATGATGGCAAGAAGATGAAGTTTAATGC 1239
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1230 TAAGGAGAGTTTGGATCGGGTTTTGGTTCAAGATGATGGCAAGAAGATGAAGGTTAATTC 1289
Query 1240 CAAGAAGCTTAAAGAACTAGCACAAGAAGCTGTCTCTACGGAAGGAAGCTCCTTTGAGAA 1299
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1290 TAAGAAGCTTAAAGAACTAGCACAAGACGCTGTCTCTACGGAAGGAAGCTCCTTTAAGAA 1349
Query 1300 TTTCAAAGGTTTGTTGGACGAAGTTATGAAAGTTT 1334
||||||||||||||||||||||||| |||||||||
Sbjct 1350 TTTCAAAGGTTTGTTGGACGAAGTTGTGAAAGTTT 1384
> Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359
Length=1386
Score = 1125 bits (609), Expect = 0.0
Identities = 1123/1361 (83%), Gaps = 75/1361 (6%)
Strand=Plus/Plus
Query 15 ACTCCCACGTGGCAGTTCTCGCTTTTCCATTCGGCAGTCATGGTCAG--GCTATCCTCGC 72
|||| ||||||||||||||||||||||| ||||| | ||| | ||| || ||||| |
Sbjct 29 ACTCACACGTGGCAGTTCTCGCTTTTCCTTTCGGTACTCA-CG-CAGCTCCTCTCCTCAC 86
Query 73 CGTCACCCGTCGTCTCGCCACCGCAGCTCCTTCCACCGTCTTCTCCTTCTTGAACACCTC 132
|||||| || || |||||| |||| |||||||||||||||||||||||||| |||||| |
Sbjct 87 CGTCACGCGCCGCCTCGCCTCCGCTGCTCCTTCCACCGTCTTCTCCTTCTTCAACACCGC 146
Query 133 ACAATCCAACTTC-TCG-T-TGCTCTCC--TC--CG-ATC--TTC--CT-CCGAACATTC 179
||||||||| || ||| | | || || | || | | || || ||||| ||
Sbjct 147 GCAATCCAAC-TCTTCGTTATTTTCCCCAGGCGACGAAGCAGATCGTCTGGAGAACA-TC 204
Query 180 -GGGTCCATGACGTGT-CCGACGGTGTTCCCGAGGGATACGTGCTC-TCGAGGA-ATCCA 235
| ||| | || || | ||||||||||||| |||||||||||| || || ||| | |||
Sbjct 205 AGAGTCTACGATGT-TCCCGACGGTGTTCCGGAGGGATACGTGTTCACCG-GGAGA-CCA 261
Query 236 CAGGAGGCGGTCGAGCTGTTTCTTGAAGCGGCGCCGGAGATTTTTAGGAGAGAACTCGCG 295
||||||||| ||||||||||||| ||||| |||||||||| ||| |||||||| |||||
Sbjct 262 CAGGAGGCGATCGAGCTGTTTCTAGAAGCTGCGCCGGAGAATTTCCGGAGAGAAATCGCG 321
Query 296 GTGGCGGAGACTGAGGTTGGTAGGAAAGTGACATGCATGCTCACGGATGCGTTCATCTGG 355
| ||||||||| |||||||||||| | |||| ||| || | || |||||||| |||||
Sbjct 322 GCGGCGGAGACGGAGGTTGGTAGGGACGTGAAATGTTTGTTGACTGATGCGTTTTTCTGG 381
Query 356 TTCGCGGGGGATATGGCGGCGGAGATGAAAGTGTCGTGGGTTGC-TTTCTGGACCTCC-G 413
||||||| ||||||||| |||||||||| | |||||| |||| ||| |||||| || |
Sbjct 382 TTCGCGGCTGATATGGCGACGGAGATGAATGCATCGTGGATTGCGTTT-TGGACCGCCGG 440
Query 414 -G--AACTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACAATCGCTGTC-- 468
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 441 AGCAAACTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACCATCGGTGTCAA 500
Query 469 ---A--A---------A-GGA--A-ACATTAGGGTGTATTTCTGGAATGGAGAAGATCAG 510
| | | ||| | |||||||||| |||||| |||||||||||||||||
Sbjct 501 AGAAGTAGGTGGGCGTATGGAGGAGACATTAGGGTTTATTTCAGGAATGGAGAAGATCAG 560
Query 511 AGTTAAAGATACACCAGAAGGAGTTGTGTTTGGGAATTTAGACTCTGTTTTCTCGAAGAT 570
||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 561 AGTCAAAGACACACCAGAAGGAGTTGTGTTTGGTAATTTAGACTCTGTTTTCTCCAAGAT 620
Query 571 GTTGCACCAAATGGGACTTGCTTTGCCTCGTGCCACTACGGTTTACATGAATTCTTTTGA 630
| |||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||
Sbjct 621 GCTGCACCAAATGGGACTTGCTTTACCTCGTGCCACTGCGGTTTTCATCAATTCTTTTGA 680
Query 631 AGAATTAGACCCTACATTGACTGATAACCTCAGATTGAAATTCAAACGTTACCTGAGCAT 690
|||| | || ||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 681 AGAACTGGATCCTACATTGACCAATAACCTCAGATCGAAATTCAAACGTTACCTGAACAT 740
Query 691 CGGTCCTCTTGCGTTGTTATTCTCTACTTCGCAAAGAGAAACACCATTGCATGATCCACA 750
||||||| | || |||| | | | |||| | | | | || | |||| ||||| ||
Sbjct 741 TGGTCCTC-T-CG-GGTTA-T-TAT-CTTC-TACATTG-CA-ACTAGTGCACGATCCTCA 791
Query 751 CGGCTGCTTGGCTTGGATCAAGAAGCGGTCCACTGCTTCTGTAGTTTACATT-GCCTTCG 809
|||||| ||||||||||| |||| | ||| |||||||||| | |||||| | ||| |
Sbjct 792 CGGCTGTTTGGCTTGGATTGGGAAGAGATCCCCTGCTTCTGTGGCGTACATTAG-CTTTG 850
Query 810 GTA-GAGTCATGACACCGCCTCCTGGAGAGCTTGTAGTGGTAGCACAAGGATTGGAATCG 868
||| | |||||||||||||||||||||||||||| | | ||||| |||| |||||||||
Sbjct 851 GTACG-GTCATGACACCGCCTCCTGGAGAGCTTGCGGCGATAGCAGAAGGGTTGGAATCG 909
Query 869 AGTAAAGTGCCTTTTGTTTGGTCGCTCCAA-GAGAAGAACATGGTTCATTTACCAAAAGG 927
||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 910 AGTAAAGTGCCGTTTGTTTGGTCGCT-TAAGGAGAAGAACTTGGTTCATTTACCAAAAGG 968
Query 928 GTTTTTGGATGGGACAAGAGAGCAAGGAATGGTGGTCCCATGGGCACCACAAGTGGAGCT 987
|||||||||| |||||||||||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 969 GTTTTTGGATAGGACAAGAGAGCAAGGGATAGTGGTTCCATGGGCACCGCAAGTGGAACT 1028
Query 988 GCT-AAACCATGAAG-CAATGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGTGTTG 1045
||| |||| | |||| ||| ||||||||||||| ||||| |||| |||||||| ||||||
Sbjct 1029 GCTGAAAC-A-GAAGGCAACGGGTGTGTTTGTGACGCATTGTGGATGGAACTCGGTGTTG 1086
Query 1046 GAGAGTGTATCGGCAGGTGTACCAATGATTTGTAGACCGATTTTCGGGGATCAC-GCACT 1104
|||||||| |||| |||||| | |||||||| || ||| |||| |||||||| | | |
Sbjct 1087 GAGAGTGTTTCGGGAGGTGTTCTGATGATTTGCAGGCCGTTTTTTGGGGATCAGAG-ATT 1145
Query 1105 CAATGCAAGATCCGTGGAGGCTGTGTGGGAAATTGGAATGACGATTAGT-AGTGGAGTCT 1163
|| | |||| | ||||||| ||||||||| ||||||| |||||||| | | ||||||||
Sbjct 1146 GAACGGAAGAGCAGTGGAGGTTGTGTGGGAGATTGGAACGACGATTA-TCAATGGAGTCT 1204
Query 1164 TCACGAAGGATGGATTTGAGGAGAGTTTGGATCGGGTTTTGGTTCAAGATGATGGCAAGA 1223
|||| || ||||| |||||| || |||||||||| |||||||||||||||||||| ||||
Sbjct 1205 TCACAAAAGATGGTTTTGAGAAGTGTTTGGATCGAGTTTTGGTTCAAGATGATGGTAAGA 1264
Query 1224 AGATGAAGTTTAATGCCAAGAAGCTTAAAGAACTAGCACAAGAAGCTGTCTCTACGGAAG 1283
||||||| | |||||| |||||||||||||| |||| ||| |||||||||||| || |||
Sbjct 1265 AGATGAAATGTAATGCTAAGAAGCTTAAAGAGCTAGGACACGAAGCTGTCTCTTCGAAAG 1324
Query 1284 GAAGCTCCTTTGAGAATTTCAAAGGTTTGTTGGACGAAGTT 1324
|||| |||| |||||||||| ||| |||||||| | ||||
Sbjct 1325 GAAGTTCCTCTGAGAATTTCGGAGGATTGTTGGATGCAGTT 1365
> Ahg906050 jgi|Araly1|906050|Al_scaffold_0003_3178
Length=396
Score = 207 bits (112), Expect = 1e-52
Identities = 203/246 (83%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 233 CCACAGGAGGCGGTCGAGCTGTTTCTTGAAGCGGCGCCGGAGATTTTTAGGAGAGAACTC 292
||||| |||||| ||||||||||||| ||||| |||||||||| ||| |||||||| ||
Sbjct 154 CCACAAGAGGCGATCGAGCTGTTTCTAGAAGCTGCGCCGGAGAATTTCCGGAGAGAAATC 213
Query 293 GCGGTGGCGGAGACTGAGGTTGGTAGGA-AAGTGACATGCATGCTCACGGATGCGTTCAT 351
|||| | ||||| |||||||||| || || ||| ||| || | || ||||||| |
Sbjct 214 GCGGCAGAGGAGAAGGAGGTTGGTA-GAGAATTGAAATGTTTGTTGACTAATGCGTT-TT 271
Query 352 -CTGGTTCGCGGGGGATATGGCGGCGGAGATGAAAGTGTCGTGGGTTGC-TTTCTGGACC 409
|| |||||||| ||||||||| |||||||||| | | ||||||||| ||| ||||||
Sbjct 272 CCTCGTTCGCGGCTGATATGGCGACGGAGATGAATGCATTGTGGGTTGCGTTT-TGGACC 330
Query 410 TCC-G-G--AACTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACAATCGCT 465
|| | | |||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 331 GCCGGAGCAAACTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACCATCGAT 390
Query 466 GTCAAA 471
||||||
Sbjct 391 GTCAAA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5