BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17060.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488569 jgi|Araly1|488569|fgenesh2_kg.6__1703__AT5G17060.1 1105 0.0
Ahg477560 jgi|Araly1|477560|fgenesh2_kg.3__261__AT3G03120.1 710 0.0
> Ahg488569 jgi|Araly1|488569|fgenesh2_kg.6__1703__AT5G17060.1
Length=841
Score = 1105 bits (598), Expect = 0.0
Identities = 634/652 (97%), Gaps = 0/652 (0%)
Strand=Plus/Plus
Query 230 ttttttttGGGTTTGGGAGCGATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTC 289
|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTTTTTTGGGTATCGGAGCCATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTC 249
Query 290 GGCAATCAAGAAATGAGGGTCGTTATGCTGGGGCTGGATGCTGCTGGAAAAACAACTATT 349
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 250 GGAAATCAAGAAATGAGGGTCGTTATGCTGGGGCTGGATGCTGCTGGCAAAACAACTATT 309
Query 350 CTCTACAAGCTTCATATTGGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTCAATGTT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 310 CTCTACAAGCTTCATATTGGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTTAATGTT 369
Query 410 GAGAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GAGAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAA 429
Query 470 CTGAGACCTCTTTGGAGGCATTACTTCAATAATACTGATGGACTTATATACGTGGTGGAT 529
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 430 CTGAGACCTCTTTGGAGGCACTACTTCAATAATACTGATGGACTTATTTACGTGGTGGAT 489
Query 530 TCCTTAGATCGAGAGAGGATCGGGAAAGCAAAGCAAGAATTTCAGGAGATCATAAAAGAC 589
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 490 TCCTTAGATCGAGAGAGGATCGGGAAAGCAAAACAAGAATTTCAGGAGATCATAAAAGAC 549
Query 590 CCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCC 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCC 609
Query 650 ATGTCACCGAGAGAAGTATGTGAAGGGTTAGGCTTATTTGATCTCAAGAACAGGAAATGG 709
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 610 ATGTCACCGAGAGAAGTATGTGAAGGGCTAGGCTTATTTGATCTCAAGAACAGGAAATGG 669
Query 710 CACATACAAGGTACTTGTGCTCTTCGTGGAGACGGGCTTTATGAAGGCTTGGACTGGTTA 769
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 670 CACATACAAGGTACCTGTGCTCTTCGTGGAGATGGGCTTTATGAAGGCTTGGACTGGTTA 729
Query 770 TCATCTACTCTTAAGGATGTTAAAGCCGCTGGATTCACATCGGTTGGCCACTCGTTTTAA 829
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 730 TCATCTACTCTTAAAGATGTTAAAGCCGCTGGATTCACATCGGTTGGCCCCTCGTTTTAA 789
Query 830 ATCTTCCAGGTATACTTTGATATCAATGGCCAGTGTCTTCTTCTTGGCTTTA 881
||| ||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 790 CTCTCCCAGGTATACTTTGATATCCATGGCCAATGTCTTCTTCTTGGCTTTA 841
Score = 255 bits (138), Expect = 4e-67
Identities = 176/193 (91%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 10 TGAAAGGAATATGAATATTCCGTTGAAGAAGACTTGCTCCTGAAATCCTTTGGACCGAAA 69
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 2 TGAAAGGAATATGAATATTCCGTTGAAGA---CTTTCTCCTGAAATCGTTTGGACCGAAA 58
Query 70 CTCGTAAAATTATTTCCCTTCAATTTCTCTGAAATCTATTCACCGTCTCCT-TTGTCTCC 128
| |||| ||||||| |||||||||||||||| ||||| ||||||||||||| || |||||
Sbjct 59 CGCGTACAATTATT-CCCTTCAATTTCTCTGCAATCTCTTCACCGTCTCCTCTT-TCTCC 116
Query 129 TCCTCCAAA-TCGATCGTTCCTCGTCGTCGTCTGATTTTCTCTACGATTGCTTTTT-CTG 186
||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 117 TCCTCCAAAATCGATCGTTCGTCGTCGTCGTCTGATTTTCTCTACGATTTCTTTTTTCTG 176
Query 187 TCTAGCTCGATAA 199
||||||||| |||
Sbjct 177 TCTAGCTCGGTAA 189
> Ahg477560 jgi|Araly1|477560|fgenesh2_kg.3__261__AT3G03120.1
Length=1135
Score = 710 bits (384), Expect = 0.0
Identities = 569/656 (87%), Gaps = 22/656 (3%)
Strand=Plus/Plus
Query 193 TCGATAAGATAAAACAAAACTAATT-TT-TGAAGAGttt---ttttttttGGGTTTGGGA 247
||||||||| ||| |||| || || || || || |||| |||||||||| | ||
Sbjct 128 TCGATAAGAGAAAGTAAAA-TACTTCTTGTG-AGGGTTTAAGCTTTTTTTGGG--T--GA 181
Query 248 GCGATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTCGGCAATCAAGAAATGAGG 307
| |||||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||
Sbjct 182 GAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAGGAGATGAGG 241
Query 308 GTCGTTATGCTGGGGCTGGATGCTGCTGGAAAAACAACTATTCTCTACAAGCTTCATATT 367
|||||||||||||| |||||||| ||||| |||||||| || || |||||||| || ||
Sbjct 242 GTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAGCTCCACATA 301
Query 368 GGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTCAATGTTGAGAAAGTTCAGTACAAG 427
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||||
Sbjct 302 GGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTTCAGTACAAG 361
Query 428 AATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTT-TGGAG 486
||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| |||||
Sbjct 362 AATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCC-CTTGTGGAG 420
Query 487 GCATTACTTCAATAATACTGATGGACTTATATACGTGGTGGATTCCTTAGATCGAGAGAG 546
|||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||
Sbjct 421 GCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGACCGAGAGAG 480
Query 547 GATCGGGAAAGC-AAAGCAAGAATTTCAGGAGATCATAAAAGACCCATTCATGCTAAACA 605
||| || ||||| ||| |||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 481 GATTGGTAAAGCCAAA-CAAGAATTTCAGGATATCATAAGAGACCCATTCATGCTCAACA 539
Query 606 GTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCCATGTCACCGAGAGAAG 665
|| ||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 540 GTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCTCGAGAAG 599
Query 666 TATGTGAAGGG-TTAGGCTTATTTGATCTCAAGAACAGGAAATGGCACATACAAGGTACT 724
||||||||||| || |||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 600 TATGTGAAGGGCTT-GGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAAGGCACA 658
Query 725 TGTGCTCTTCGTGGAGACGGGCTTTATGAAGGCTTGGACTGGTTATCATCTACTCTTAAG 784
|||||||||| ||||| ||||| ||||||||||| ||||||||||| |||| || ||
Sbjct 659 TGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACACTCAAA 718
Query 785 GATGTTAAAGCCGCTGGATT-CACATCGGTTGG-CCACTCGTTTTAAATCT-TCCA 837
|| |||||||||||||| || | |||| ||||| || ||||||||| ||| ||||
Sbjct 719 GAGGTTAAAGCCGCTGG-TTACTCATCAGTTGGTCC-CTCGTTTTAGCTCTCTCCA 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5