BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17070.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893619 jgi|Araly1|893619|Al_scaffold_0006_1615 1134 0.0
> Ahg893619 jgi|Araly1|893619|Al_scaffold_0006_1615
Length=798
Score = 1134 bits (614), Expect = 0.0
Identities = 709/755 (94%), Gaps = 6/755 (1%)
Strand=Plus/Plus
Query 133 TTCATCCCAATGACGGCGTTCAACGCCAGGATCACGCCGTCCTTCCCGAAGTTCTTGAGC 192
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 47 TTCATCCCAATGACGGCGTTCAACGCCAGGATCACGCCGTGCTTCCCGAAGTTCTCGAGC 106
Query 193 ATCCTGGAGCTGAGCAGATAGCAGATATGTCTGAGGAAGAAGTAAAGCGCACATTAGAAG 252
||| ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 107 ATCGTGGAGCTGAGCAGATAGCAGATATGTCTGCGGAAGAAGTAAAGAGGACATTAGAAG 166
Query 253 CTGTAGCATCTACTGGGAAGTTCTGGCAGGACTGGGAGATACTAAAGGGAACGCTATCGT 312
| ||||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 167 CAGTAGCATCTACCGGAAAGTTCTGGCAAGACTGGGAGAAACTAAAGGGAACGCTATCGT 226
Query 313 ACTGGTTGAAGAAGGTTCTATCGGAATATTCTGAGGCAAAAATGACGGATGAGCAACAAA 372
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 227 ACTGGTTGAAGAAGGTTCTATCGGAATATTCTGAGGCAAAAATGACGGACGAACAACAAA 286
Query 373 AGGAAGCTCTTGGAGAACCATATTCAGAGCTGGTTAGTCGATTGGATGAAGCCCTTCTTA 432
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 287 AGGAAGCTCTTGGAGAAACATACTCAGAGCTGGTTAGTCGACTGGATGAAGCCCTTCTTA 346
Query 433 GATTCGATGATGGACCTCCATTTACATTGCAGAGACTCTGTGAGATCCTTTTGGCTGCAA 492
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GTTTCGATGAAGGACCTCCATTTACATTGCAGAGACTCTGTGAGATCCTTTTGGCTGCAA 406
Query 493 GGAGCATCTACCCAAAGCTCTCAAAACTCGCTCTTGCATTAGAAAAGAATCTGTTGGTTA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GGAGCATCTACCCAAAGCTCTCAAAACTCGCTCTTGCATTAGAAAAGAATCTGTTGGTTA 466
Query 553 CTTCTATGTTAGCCATCAGTACAGAGCCACAATCACAAACCACTGAGGATCCAAACACAG 612
||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||
Sbjct 467 CTTCTATGTTAGCCATCAGTACAGACCCACAATCACAAACCGTTGATGATCCAAACTCAG 526
Query 613 CAACCTCAGAGACAATAACATCTGCTGCAAGTTGCG-ATCCAAATGTAATTGA-GTCAAT 670
||||| |||| ||||||||| |||||| |||||||| | ||||||| |||||| | ||||
Sbjct 527 CAACCACAGACACAATAACAACTGCTGAAAGTTGCGCA-CCAAATGGAATTGACG-CAAT 584
Query 671 GGGAGGCGATAAGGATGAGATAATGACAGAGGTAGAAGAAGCAGATGTTGATGACGCAAT 730
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 585 GGGGGGCGATAAGGATGAGATAATGACTGAGGTAGAAGAAGCAGATGTTGATGACGCAAT 644
Query 731 GACTGTTGACATGGAAACAATCGATGAACCATCAGAGACAATGACGACCACGAGTGAGAG 790
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 645 GACTATTGACATGGAAACAATCGATGAACCATCAGAGACAATGACAACCACAAGTGAAAG 704
Query 791 TGAGACTCTAAGCGAAAACACTGCTGCACAACCATTATCGGATTCAATGG-TGGCAGAGG 849
|||||| ||||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 705 TGAGACGCTAAGCGTAAACACTGCTGCACAACCATCATCGGATTCAATGGCTG-CAGAGG 763
Query 850 AAGGAGATTCACGGTTGCCTACAACGTGTGCCTAG 884
| |||||||| ||||||||| ||||||||||||||
Sbjct 764 AGGGAGATTCGCGGTTGCCTTCAACGTGTGCCTAG 798
Score = 115 bits (62), Expect = 6e-25
Identities = 66/68 (97%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 51 ATGGAGAATCCGTCATCATCGGAAACTTCCGAGATTTCCTCCGTCGTTCATCCCAATGAC 110
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGAGAATCCATCATCATCGGAAACTTCCGAGATTTCCTCCGTCATTCATCCCAATGAC 60
Query 111 GGCGTTCA 118
||||||||
Sbjct 61 GGCGTTCA 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5